-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2015

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 638, 934
Sorry, prediction snap_scaffold_2015-snap.1-T1 fails validation.
(ACG)	 AG	638-934	GT	ATG
(GGC)	 AG	1426-1505	CT	GAC
-recovered snap_scaffold_2015-snap.1-T1, terminal, 1426, 1505
-recovered snap_scaffold_2015-snap.1-T1, internal, 638, 934
Valid prediction for GeneMark_model.109951_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 155, 291
Sorry, prediction GeneMark_model.109952_t fails validation.
(ACT)	 AG	155-291	GT	GTG
(AGA)	 AG	340-346	GT	GGG
(GAG)	 AG	434-451	TG	AAT
-recovered GeneMark_model.109952_t, terminal, 434, 451
-recovered GeneMark_model.109952_t, internal, 155, 291
-recovered GeneMark_model.109952_t, internal, 340, 346

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1664
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support