-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2011

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 41, 78
Sorry, prediction GeneMark_model.109947_t fails validation.
(ACT)	 AG	41-78	GT	CAG
(GGA)	 AG	220-335	GT	TGG
(GGA)	 AG	432-536	GT	GAG
(AGC)	 AG	570-576	GA	GAG
-recovered GeneMark_model.109947_t, terminal, 570, 576
-recovered GeneMark_model.109947_t, internal, 41, 78
-recovered GeneMark_model.109947_t, internal, 220, 335
-recovered GeneMark_model.109947_t, internal, 432, 536

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62936-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62936-T1 244-409-terminal-1 is invalid.
Couldn't classify 33, 38
Sorry, prediction GeneMark_model.109948_t fails validation.
(AGA)	 AG	33-38	GT	AAG
(CAC)	 AG	277-405	GT	CTG
(GCG)	 AG	444-524	GT	GAG
(CCA)	 AG	545-563	CA	AAC
-recovered GeneMark_model.109948_t, terminal, 545, 563
-recovered GeneMark_model.109948_t, internal, 33, 38
-recovered GeneMark_model.109948_t, internal, 277, 405
-recovered GeneMark_model.109948_t, internal, 444, 524
Valid prediction for snap_scaffold_2011-snap.1-T1
add_exon() Sorry, snap_scaffold_2011-snap.1-T1 217-409-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1670
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support