-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2009

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 229, 411
Sorry, prediction Augustus_model.g41912.t1 fails validation.
(GTC)	 AG	229-411	GT	GTG
(GAC)	 AG	560-617	CT	GAC
-recovered Augustus_model.g41912.t1, terminal, 560, 617
-recovered Augustus_model.g41912.t1, internal, 229, 411
Couldn't classify 271, 411
Couldn't classify 1601, 1612
Sorry, prediction GeneMark_model.109945_t fails validation.
(GGA)	 AG	271-411	GT	GTG
(GAG)	 AG	449-472	GT	GAG
(TAG)	 AG	1128-1133	GT	GAG
(AGA)	 AG	1156-1170	GT	GGG
(TAA)	 AG	1195-1200	GT	GGG
(AGT)	 AG	1225-1263	GT	GGG
(AGT)	 AG	1288-1326	GT	GGG
(AGT)	 AG	1351-1365	GT	GTG
(TAC)	 AG	1388-1393	GT	GGG
(AGT)	 AG	1418-1432	GT	GTG
(TAA)	 AG	1455-1478	GT	GAG
(AGT)	 AG	1534-1545	GT	GAG
(AGT)	 AG	1601-1612	GT	GAG
-recovered GeneMark_model.109945_t, internal, 271, 411
-recovered GeneMark_model.109945_t, internal, 449, 472
-recovered GeneMark_model.109945_t, internal, 1128, 1133
-recovered GeneMark_model.109945_t, internal, 1156, 1170
-recovered GeneMark_model.109945_t, internal, 1195, 1200
-recovered GeneMark_model.109945_t, internal, 1225, 1263
-recovered GeneMark_model.109945_t, internal, 1288, 1326
-recovered GeneMark_model.109945_t, internal, 1351, 1365
-recovered GeneMark_model.109945_t, internal, 1388, 1393
-recovered GeneMark_model.109945_t, internal, 1418, 1432
-recovered GeneMark_model.109945_t, internal, 1455, 1478
-recovered GeneMark_model.109945_t, internal, 1534, 1545
-recovered GeneMark_model.109945_t, internal, 1601, 1612
Valid prediction for GlimmerHMM_glimmerT_62935-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62935-T1 213-415-terminal-1 is invalid.
Valid prediction for snap_scaffold_2009-snap.1-T1
add_exon() Sorry, snap_scaffold_2009-snap.1-T1 213-415-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1671
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support