-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2008

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 253, 393
Couldn't classify 1305, 1650
Sorry, prediction snap_scaffold_2008-snap.1-T1 fails validation.
(GTA)	 AG	253-393	GT	GGG
(GGT)	 AG	781-984	GT	AGG
(GTT)	 AG	1305-1650	GT	AAG
-recovered snap_scaffold_2008-snap.1-T1, internal, 253, 393
-recovered snap_scaffold_2008-snap.1-T1, internal, 781, 984
-recovered snap_scaffold_2008-snap.1-T1, internal, 1305, 1650
Couldn't classify 253, 393
Couldn't classify 1305, 1672
Sorry, prediction Augustus_model.g41911.t1 fails validation.
(GTA)	 AG	253-393	GT	GGG
(GGT)	 AG	781-984	GT	AGG
(GTT)	 AG	1305-1672		TC
-recovered Augustus_model.g41911.t1, internal, 253, 393
-recovered Augustus_model.g41911.t1, internal, 781, 984
Couldn't classify 1305, 1672
Sorry, prediction GlimmerHMM_glimmerT_62934-T1 fails validation.
(ATG)	 GT	255-393	GT	GGG
(GGT)	 AG	781-984	GT	AGG
(GTT)	 AG	1305-1672		TC
-recovered GlimmerHMM_glimmerT_62934-T1, initial, 255, 393
-recovered GlimmerHMM_glimmerT_62934-T1, internal, 781, 984
Couldn't classify 285, 393
Couldn't classify 1305, 1672
Sorry, prediction pasa_asmbl_27268.p1 fails validation.
(GGT)	 AC	285-393	GT	GGG
(GGT)	 AG	781-984	GT	AGG
(GTT)	 AG	1305-1672		TC
-recovered pasa_asmbl_27268.p1, internal, 781, 984
Couldn't classify 253, 393
Couldn't classify 1305, 1659
Sorry, prediction GeneMark_model.109944_t fails validation.
(GTA)	 AG	253-393	GT	GGG
(GGT)	 AG	781-984	GT	AGG
(GTT)	 AG	1305-1659	GC	GGG
-recovered GeneMark_model.109944_t, internal, 253, 393
-recovered GeneMark_model.109944_t, internal, 781, 984
-recovered GeneMark_model.109944_t, internal, 1305, 1659
Valid prediction for CodingQuarry_transcript_30642-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1672
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support