-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2007

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 56, 192
Sorry, prediction Augustus_model.g41910.t1 fails validation.
(AAT)	 AG	56-192	GT	AGG
(AAC)	 AG	307-353	GT	CTG
(TCC)	 AG	813-933	TT	GAT
-recovered Augustus_model.g41910.t1, terminal, 813, 933
-recovered Augustus_model.g41910.t1, internal, 56, 192
-recovered Augustus_model.g41910.t1, internal, 307, 353
Couldn't classify 56, 192
Sorry, prediction GeneMark_model.109942_t fails validation.
(AAT)	 AG	56-192	GT	AGG
(AAC)	 AG	307-357	GA	AAG
-recovered GeneMark_model.109942_t, terminal, 307, 357
-recovered GeneMark_model.109942_t, internal, 56, 192

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2007-snap.1-T1
Couldn't classify 37, 89
Sorry, prediction GeneMark_model.109943_t fails validation.
(AGA)	 AG	37-89	GT	TCG
(GCC)	 AG	794-851	GT	CGG
(GAC)	 AG	989-1000	GT	AGG
(GGA)	 AG	1023-1224	CA	GAC
-recovered GeneMark_model.109943_t, terminal, 1023, 1224
-recovered GeneMark_model.109943_t, internal, 37, 89
-recovered GeneMark_model.109943_t, internal, 794, 851
-recovered GeneMark_model.109943_t, internal, 989, 1000

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1674
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support