-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2006

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1578, 1618
Sorry, prediction GeneMark_model.109941_t fails validation.
(ATG)	 GG	1085-1110	GT	CAG
(AGA)	 AG	1134-1142	GT	CAG
(GGA)	 AG	1173-1178	GC	AGG
(GAG)	 AG	1214-1229	GT	TAG
(GAG)	 AG	1278-1363	GT	GAG
(AGG)	 AG	1578-1618	GT	GTG
-recovered GeneMark_model.109941_t, initial, 1085, 1110
-recovered GeneMark_model.109941_t, internal, 1134, 1142
-recovered GeneMark_model.109941_t, internal, 1173, 1178
-recovered GeneMark_model.109941_t, internal, 1214, 1229
-recovered GeneMark_model.109941_t, internal, 1278, 1363
-recovered GeneMark_model.109941_t, internal, 1578, 1618

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1674
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support