-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2005

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 391, 482
Sorry, prediction snap_scaffold_2005-snap.1-T1 fails validation.
(TGT)	 AG	391-482	GT	AGG
(AGT)	 AG	811-914	CC	AGC
-recovered snap_scaffold_2005-snap.1-T1, terminal, 811, 914
-recovered snap_scaffold_2005-snap.1-T1, internal, 391, 482
Couldn't classify 35, 59
Couldn't classify 811, 885
Sorry, prediction GeneMark_model.109940_t fails validation.
(AAT)	 AG	35-59	GT	AGG
(TGT)	 AG	391-482	GT	AGG
(AGT)	 AG	811-885	GT	AGG
-recovered GeneMark_model.109940_t, internal, 35, 59
-recovered GeneMark_model.109940_t, internal, 391, 482
-recovered GeneMark_model.109940_t, internal, 811, 885
Couldn't classify 391, 482
Couldn't classify 811, 885
Sorry, prediction Augustus_model.g41909.t1 fails validation.
(TGT)	 AG	391-482	GT	AGG
(AGT)	 AG	811-885	GT	AGG
-recovered Augustus_model.g41909.t1, internal, 391, 482
-recovered Augustus_model.g41909.t1, internal, 811, 885
Couldn't classify 811, 885
Sorry, prediction GlimmerHMM_glimmerT_62933-T1 fails validation.
(ATG)	 AG	431-482	GT	AGG
(AGT)	 AG	811-885	GT	AGG
-recovered GlimmerHMM_glimmerT_62933-T1, initial, 431, 482
-recovered GlimmerHMM_glimmerT_62933-T1, internal, 431, 482
-recovered GlimmerHMM_glimmerT_62933-T1, internal, 811, 885

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1676
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support