-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2004

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 365, 409
Couldn't classify 961, 1134
Sorry, prediction GeneMark_model.109939_t fails validation.
(ACA)	 AG	365-409	GT	AGG
(AGA)	 AG	853-939	GT	GAG
(AAA)	 AG	961-1134	GT	GGG
-recovered GeneMark_model.109939_t, internal, 365, 409
-recovered GeneMark_model.109939_t, internal, 853, 939
-recovered GeneMark_model.109939_t, internal, 961, 1134

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1676
-exon list size: 8


building trellis

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50.0    
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80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support