-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2003

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2003-snap.1-T1
Couldn't classify 785, 870
Couldn't classify 1581, 1664
Sorry, prediction GeneMark_model.109938_t fails validation.
(GGC)	 AG	785-870	GT	GAG
(GAA)	 AG	894-905	GT	GAG
(GGA)	 AG	929-979	GT	GAG
(GAG)	 AG	1013-1018	GT	GAG
(GAG)	 AG	1051-1095	GT	GAG
(TAA)	 AG	1123-1134	GT	GAG
(GAG)	 AG	1178-1183	GT	GAG
(AAG)	 AG	1208-1279	GT	GAG
(AGC)	 AG	1309-1329	GT	GAG
(CCG)	 AG	1351-1437	GC	GAG
(GAG)	 AG	1462-1497	GT	GGG
(CAA)	 AG	1518-1556	GT	GAG
(GGG)	 AG	1581-1664	GC	GAG
-recovered GeneMark_model.109938_t, internal, 785, 870
-recovered GeneMark_model.109938_t, internal, 894, 905
-recovered GeneMark_model.109938_t, internal, 929, 979
-recovered GeneMark_model.109938_t, internal, 1013, 1018
-recovered GeneMark_model.109938_t, internal, 1051, 1095
-recovered GeneMark_model.109938_t, internal, 1123, 1134
-recovered GeneMark_model.109938_t, internal, 1178, 1183
-recovered GeneMark_model.109938_t, internal, 1208, 1279
-recovered GeneMark_model.109938_t, internal, 1309, 1329
-recovered GeneMark_model.109938_t, internal, 1351, 1437
-recovered GeneMark_model.109938_t, internal, 1462, 1497
-recovered GeneMark_model.109938_t, internal, 1518, 1556
-recovered GeneMark_model.109938_t, internal, 1581, 1664

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1676
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support