-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2002

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62932-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62932-T1 120-336-terminal-1 is invalid.
Couldn't classify 120, 310
Sorry, prediction snap_scaffold_2002-snap.1-T1 fails validation.
(GGG)	 AG	120-310	GT	AGG
-recovered snap_scaffold_2002-snap.1-T1, internal, 120, 310
Couldn't classify 138, 278
Sorry, prediction GeneMark_model.109937_t fails validation.
(GGG)	 AG	138-278	GT	AGG
(AGA)	 AG	409-420	GT	AGG
(GGA)	 AG	453-464	GT	AGG
(GTT)	 AG	498-572	GT	AGG
(AGA)	 AG	708-779	GT	AGG
(GGA)	 AG	803-811	GT	GAG
(GAA)	 AG	837-858	TA	GAT
-recovered GeneMark_model.109937_t, terminal, 837, 858
-recovered GeneMark_model.109937_t, internal, 138, 278
-recovered GeneMark_model.109937_t, internal, 409, 420
-recovered GeneMark_model.109937_t, internal, 453, 464
-recovered GeneMark_model.109937_t, internal, 498, 572
-recovered GeneMark_model.109937_t, internal, 708, 779
-recovered GeneMark_model.109937_t, internal, 803, 811

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1677
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support