-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2000

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62930-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62930-T1 904-1055-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 19, 163
Sorry, prediction GeneMark_model.109935_t fails validation.
(CCG)	 AG	19-163	GT	ACG
(GCT)	 AG	745-896	GT	GAG
(AGA)	 AG	1258-1287	GT	GAG
(AAA)	 AG	1313-1371	GT	TGG
(TCC)	 AG	1543-1631	TG	AAT
-recovered GeneMark_model.109935_t, terminal, 1543, 1631
-recovered GeneMark_model.109935_t, internal, 19, 163
-recovered GeneMark_model.109935_t, internal, 745, 896
-recovered GeneMark_model.109935_t, internal, 1258, 1287
-recovered GeneMark_model.109935_t, internal, 1313, 1371

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1679
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support