-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_200

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 9098, 9592
Sorry, prediction GlimmerHMM_glimmerT_61495-T1 fails validation.
(ATG)	 TG	8871-8892	GT	GGG
(TTG)	 AG	9098-9592	GT	TGG
-recovered GlimmerHMM_glimmerT_61495-T1, initial, 8871, 8892
-recovered GlimmerHMM_glimmerT_61495-T1, internal, 9098, 9592
Couldn't classify 4350, 4370
Couldn't classify 9098, 9583
Sorry, prediction snap_scaffold_200-snap.1-T1 fails validation.
(CGA)	 AG	4350-4370	GT	GGG
(AAA)	 AG	4914-4934	GT	TAG
(TTG)	 AG	9098-9583	GT	AGG
-recovered snap_scaffold_200-snap.1-T1, internal, 4350, 4370
-recovered snap_scaffold_200-snap.1-T1, internal, 4914, 4934
-recovered snap_scaffold_200-snap.1-T1, internal, 9098, 9583
Couldn't classify 9098, 9583
Sorry, prediction Augustus_model.g40899.t1 fails validation.
(ATG)	 TG	8871-8892	GT	GGG
(TTG)	 AG	9098-9583	GT	AGG
-recovered Augustus_model.g40899.t1, initial, 8871, 8892
-recovered Augustus_model.g40899.t1, internal, 9098, 9583
Couldn't classify 9435, 9592
Sorry, prediction GeneMark_model.106913_t fails validation.
(ATG)	 TG	8871-8892	GT	GGG
(TTG)	 AG	9098-9206	GT	AGG
(ACA)	 AG	9237-9290	GT	GAG
(TCA)	 AG	9435-9592	GT	TGG
-recovered GeneMark_model.106913_t, initial, 8871, 8892
-recovered GeneMark_model.106913_t, internal, 9098, 9206
-recovered GeneMark_model.106913_t, internal, 9237, 9290
-recovered GeneMark_model.106913_t, internal, 9435, 9592

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9846
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support