-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_8880435-9099152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.83242_t
Valid prediction for GlimmerHMM_glimmerT_47719-T1
Valid prediction for GeneMark_model.83231_t
Valid prediction for snap_scaffold_20-snap.1981-T1
Valid prediction for GeneMark_model.83218_t
Valid prediction for Augustus_model.g31808.t1
Couldn't classify 81712, 81871
Sorry, prediction GeneMark_model.83227_t fails validation.
(ATG)	 CG	75850-75874	GT	CCG
(CCG)	 AG	75924-76095	GT	CTG
(CAT)	 AG	76122-76238	GT	GAG
(GGC)	 AG	77369-77374	GT	GCG
(GAG)	 AG	77638-77653	GT	AGG
(GAG)	 AG	79566-79711	GT	GAG
(ACT)	 AG	80208-80492	GT	GGG
(AGC)	 AG	81187-81351	GT	ATG
(GGG)	 AG	81404-81445	GT	GGG
(GGA)	 AG	81466-81561	GC	GAG
(CGA)	 AG	81587-81688	GT	AAG
(AGA)	 AG	81712-81871	GT	CAG
-recovered GeneMark_model.83227_t, initial, 75850, 75874
-recovered GeneMark_model.83227_t, internal, 75924, 76095
-recovered GeneMark_model.83227_t, internal, 76122, 76238
-recovered GeneMark_model.83227_t, internal, 77369, 77374
-recovered GeneMark_model.83227_t, internal, 77638, 77653
-recovered GeneMark_model.83227_t, internal, 79566, 79711
-recovered GeneMark_model.83227_t, internal, 80208, 80492
-recovered GeneMark_model.83227_t, internal, 81187, 81351
-recovered GeneMark_model.83227_t, internal, 81404, 81445
-recovered GeneMark_model.83227_t, internal, 81466, 81561
-recovered GeneMark_model.83227_t, internal, 81587, 81688
-recovered GeneMark_model.83227_t, internal, 81712, 81871
Valid prediction for HiQ_model.g31824.t1
Valid prediction for GlimmerHMM_glimmerT_47694-T1
Valid prediction for snap_scaffold_20-snap.2006-T1
Valid prediction for Augustus_model.g31827.t1
Valid prediction for Augustus_model.g31832.t1
Valid prediction for pasa_asmbl_25969.p1
Valid prediction for GlimmerHMM_glimmerT_47714-T1
Valid prediction for GeneMark_model.83214_t
Valid prediction for GeneMark_model.83246_t
Valid prediction for GlimmerHMM_glimmerT_47699-T1
Valid prediction for GeneMark_model.83241_t
Valid prediction for GlimmerHMM_glimmerT_47688-T1
Valid prediction for GeneMark_model.83230_t
Valid prediction for snap_scaffold_20-snap.1996-T1
Valid prediction for snap_scaffold_20-snap.1965-T1
Valid prediction for Augustus_model.g31807.t1
Valid prediction for snap_scaffold_20-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_47723-T1
Valid prediction for snap_scaffold_20-snap.2002-T1
Valid prediction for snap_scaffold_20-snap.1969-T1
Valid prediction for GeneMark_model.83235_t
Valid prediction for snap_scaffold_20-snap.1985-T1
Valid prediction for snap_scaffold_20-snap.1991-T1
Valid prediction for CodingQuarry_transcript_30526-T1
Valid prediction for snap_scaffold_20-snap.1978-T1
Sorry, intron length (6) is less than minimum required (10)
Couldn't classify 173921, 173987
Couldn't classify 174127, 174680
Sorry, prediction pasa_asmbl_25973.p1 fails validation.
(CCC)	 GC	173921-173987	GT	AGG
(ATG)	 AG	174127-174680	AT	CCA
Valid prediction for Augustus_model.g31811.t1
Valid prediction for Augustus_model.g31806.t1
Couldn't classify 167333, 167797
Sorry, prediction pasa_asmbl_25972.p1 fails validation.
(ACA)	 CC	167333-167797	AG	CCA
Valid prediction for GeneMark_model.83250_t
Valid prediction for GlimmerHMM_glimmerT_47692-T1
Valid prediction for GeneMark_model.83224_t
Valid prediction for snap_scaffold_20-snap.2003-T1
Valid prediction for GeneMark_model.83237_t
Valid prediction for HiQ_model.g31810.t1
Valid prediction for GlimmerHMM_glimmerT_47712-T1
Valid prediction for GeneMark_model.83234_t
Valid prediction for GeneMark_model.83247_t
Couldn't classify 213522, 213581
Sorry, prediction pasa_asmbl_25978.p1 fails validation.
(CCT)	 CG	213522-213581	GT	AGG
(GTG)	 AG	213750-213841	GT	AGG
(TCT)	 AG	214124-214300	GT	ATG
(TTT)	 AG	214632-214694	GT	CGG
(GGA)	 AG	214854-214930	GC	AGG
(GGA)	 AG	215254-215396	GT	AGG
(TCT)	 AG	215726-215833	GT	GGG
(CTG)	 AG	215937-216017	GT	GGG
(GGT)	 AG	216322-216525	GG	AGG
-recovered pasa_asmbl_25978.p1, terminal, 216322, 216525
-recovered pasa_asmbl_25978.p1, internal, 213750, 213841
-recovered pasa_asmbl_25978.p1, internal, 214124, 214300
-recovered pasa_asmbl_25978.p1, internal, 214632, 214694
-recovered pasa_asmbl_25978.p1, internal, 214854, 214930
-recovered pasa_asmbl_25978.p1, internal, 215254, 215396
-recovered pasa_asmbl_25978.p1, internal, 215726, 215833
-recovered pasa_asmbl_25978.p1, internal, 215937, 216017
Valid prediction for GlimmerHMM_glimmerT_47706-T1
Valid prediction for GeneMark_model.83223_t
Valid prediction for snap_scaffold_20-snap.1990-T1
Valid prediction for GeneMark_model.83254_t
Valid prediction for snap_scaffold_20-snap.2004-T1
Valid prediction for Augustus_model.g31820.t1
Valid prediction for GeneMark_model.83212_t
Valid prediction for snap_scaffold_20-snap.1970-T1
Valid prediction for Augustus_model.g31821.t1
Valid prediction for snap_scaffold_20-snap.1999-T1
Valid prediction for GlimmerHMM_glimmerT_47705-T1
Valid prediction for GeneMark_model.83233_t
Valid prediction for GeneMark_model.83238_t
Valid prediction for snap_scaffold_20-snap.1979-T1
Valid prediction for GeneMark_model.83216_t
Valid prediction for snap_scaffold_20-snap.1976-T1
Valid prediction for snap_scaffold_20-snap.1972-T1
Couldn't classify 66608, 66725
Couldn't classify 69162, 69245
Sorry, prediction pasa_asmbl_25966.p1 fails validation.
(TCC)	 GG	66608-66725	GT	AGG
(TAG)	 AG	67536-67753	GT	AGG
(TGC)	 AG	68665-68734	GT	TGG
(CGG)	 AG	68865-68917	GT	AGG
(CGG)	 AG	69162-69245	GG	AGG
-recovered pasa_asmbl_25966.p1, internal, 67536, 67753
-recovered pasa_asmbl_25966.p1, internal, 68665, 68734
-recovered pasa_asmbl_25966.p1, internal, 68865, 68917
Valid prediction for GeneMark_model.83262_t
Valid prediction for Augustus_model.g31812.t1
Couldn't classify 209182, 209257
Couldn't classify 213287, 213322
Sorry, prediction pasa_asmbl_25977.p1 fails validation.
(CGC)	 TG	209182-209257	GT	CAG
(CGG)	 AG	210271-210380	GT	GGG
(TTC)	 AG	210821-210964	GT	AGG
(GTT)	 AG	211465-211540	GT	AGG
(GTA)	 AG	211795-211930	GT	GGG
(GGA)	 AG	212606-212687	GT	CGG
(GAT)	 AG	213287-213322	GA	CAG
-recovered pasa_asmbl_25977.p1, internal, 210271, 210380
-recovered pasa_asmbl_25977.p1, internal, 210821, 210964
-recovered pasa_asmbl_25977.p1, internal, 211465, 211540
-recovered pasa_asmbl_25977.p1, internal, 211795, 211930
-recovered pasa_asmbl_25977.p1, internal, 212606, 212687
Valid prediction for snap_scaffold_20-snap.1963-T1
Valid prediction for snap_scaffold_20-snap.1995-T1
Valid prediction for CodingQuarry_transcript_30525-T1
Valid prediction for snap_scaffold_20-snap.1989-T1
Valid prediction for snap_scaffold_20-snap.1975-T1
Valid prediction for GeneMark_model.83249_t
Valid prediction for GlimmerHMM_glimmerT_47687-T1
Valid prediction for GlimmerHMM_glimmerT_47691-T1
Valid prediction for snap_scaffold_20-snap.1983-T1
Valid prediction for GlimmerHMM_glimmerT_47700-T1
Valid prediction for GlimmerHMM_glimmerT_47715-T1
Valid prediction for GeneMark_model.83252_t
Valid prediction for pasa_asmbl_25963.p1
Valid prediction for GeneMark_model.83256_t
Valid prediction for GeneMark_model.83240_t
Valid prediction for snap_scaffold_20-snap.2007-T1
Valid prediction for GlimmerHMM_glimmerT_47707-T1
Valid prediction for GeneMark_model.83244_t
Valid prediction for GlimmerHMM_glimmerT_47695-T1
Valid prediction for GeneMark_model.83260_t
Valid prediction for GeneMark_model.83229_t
Valid prediction for GeneMark_model.83264_t
Couldn't classify 72048, 72119
Sorry, prediction pasa_asmbl_25967.p1 fails validation.
(AGG)	 CC	72048-72119	GT	GGG
(ATG)	 AG	72489-72635	GT	AGG
(TTT)	 AG	72726-72797	GT	GGG
(GCT)	 AG	73028-73204	CT	GAC
-recovered pasa_asmbl_25967.p1, initial, 72489, 72635
-recovered pasa_asmbl_25967.p1, terminal, 73028, 73204
-recovered pasa_asmbl_25967.p1, internal, 72489, 72635
-recovered pasa_asmbl_25967.p1, internal, 72726, 72797
Couldn't classify 203926, 204120
Couldn't classify 208466, 208570
Sorry, prediction pasa_asmbl_25976.p1 fails validation.
(AGC)	 AG	203926-204120	GT	AGG
(GTC)	 AG	204485-204593	GT	AGG
(ATG)	 AG	204755-204903	GT	AGG
(GAC)	 AG	205311-205431	GT	GGG
(GTA)	 AG	208108-208253	GT	AGG
(GCC)	 AG	208466-208570	AT	TCA
add_exon() Sorry, pasa_asmbl_25976.p1 204755-204903-initial-1 is invalid.
-recovered pasa_asmbl_25976.p1, initial, 204755, 204903
-recovered pasa_asmbl_25976.p1, internal, 203926, 204120
-recovered pasa_asmbl_25976.p1, internal, 204485, 204593
-recovered pasa_asmbl_25976.p1, internal, 204755, 204903
-recovered pasa_asmbl_25976.p1, internal, 205311, 205431
-recovered pasa_asmbl_25976.p1, internal, 208108, 208253
Valid prediction for Augustus_model.g31828.t1
Valid prediction for snap_scaffold_20-snap.1994-T1
Valid prediction for GlimmerHMM_glimmerT_47689-T1
Valid prediction for GlimmerHMM_glimmerT_47704-T1
Valid prediction for GlimmerHMM_glimmerT_47710-T1
Valid prediction for GeneMark_model.83220_t
Valid prediction for Augustus_model.g31825.t1
Valid prediction for CodingQuarry_transcript_30527-T1
Valid prediction for GeneMark_model.83226_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.83255_t
Valid prediction for snap_scaffold_20-snap.1993-T1
Valid prediction for GlimmerHMM_glimmerT_47718-T1
Valid prediction for GeneMark_model.83253_t
Valid prediction for Augustus_model.g31826.t1
Valid prediction for Augustus_model.g31816.t1
Valid prediction for GlimmerHMM_glimmerT_47720-T1
Valid prediction for GeneMark_model.83243_t
Valid prediction for HiQ_model.g31809.t1
Valid prediction for snap_scaffold_20-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_47709-T1
Valid prediction for GlimmerHMM_glimmerT_47701-T1
Valid prediction for Augustus_model.g31815.t1
Valid prediction for GeneMark_model.83265_t
Valid prediction for Augustus_model.g31829.t1
Valid prediction for snap_scaffold_20-snap.1998-T1
Valid prediction for Augustus_model.g31817.t1
Valid prediction for GlimmerHMM_glimmerT_47713-T1
Valid prediction for GlimmerHMM_glimmerT_47698-T1
Valid prediction for snap_scaffold_20-snap.1977-T1
Valid prediction for Augustus_model.g31818.t1
Valid prediction for Augustus_model.g31813.t1
Valid prediction for GeneMark_model.83263_t
Valid prediction for GeneMark_model.83219_t
Valid prediction for GlimmerHMM_glimmerT_47703-T1
Valid prediction for GeneMark_model.83221_t
Valid prediction for GlimmerHMM_glimmerT_47696-T1
Valid prediction for snap_scaffold_20-snap.1982-T1
Valid prediction for GeneMark_model.83248_t
Valid prediction for Augustus_model.g31830.t1
Couldn't classify 136833, 136955
Couldn't classify 137338, 137541
Sorry, prediction pasa_asmbl_27211.p1 fails validation.
(AGG)	 CC	136833-136955	GT	AGG
(TTG)	 AG	137338-137541	AC	GTA
Valid prediction for CodingQuarry_transcript_30524-T1
Valid prediction for snap_scaffold_20-snap.1966-T1
Valid prediction for GeneMark_model.83258_t
Valid prediction for GeneMark_model.83245_t
Valid prediction for snap_scaffold_20-snap.2001-T1
Valid prediction for GeneMark_model.83215_t
Valid prediction for GlimmerHMM_glimmerT_47716-T1
Valid prediction for GlimmerHMM_glimmerT_47690-T1
Valid prediction for snap_scaffold_20-snap.1997-T1
Valid prediction for snap_scaffold_20-snap.1987-T1
Valid prediction for Augustus_model.g31831.t1
Valid prediction for GeneMark_model.83232_t
Couldn't classify 128865, 128874
Sorry, prediction GeneMark_model.83228_t fails validation.
(ATG)	 CC	126891-126912	GT	TTG
(GTG)	 AG	126977-127171	GT	CGG
(CTG)	 AG	127194-127261	GT	GCG
(GAT)	 AG	127298-127314	GT	GAG
(AGG)	 AG	127337-127357	GT	GTG
(GGA)	 AG	127399-127446	GT	TGG
(GGA)	 AG	127468-127515	GT	GTG
(GGC)	 AG	127686-127734	GT	CTG
(CTG)	 AG	127995-128201	GT	AGG
(AGG)	 AG	128770-128783	GT	GAG
(ACA)	 AG	128819-128845	GT	AAG
(AGA)	 AG	128865-128874	GT	AGG
-recovered GeneMark_model.83228_t, initial, 126891, 126912
-recovered GeneMark_model.83228_t, internal, 126977, 127171
-recovered GeneMark_model.83228_t, internal, 127194, 127261
-recovered GeneMark_model.83228_t, internal, 127298, 127314
-recovered GeneMark_model.83228_t, internal, 127337, 127357
-recovered GeneMark_model.83228_t, internal, 127399, 127446
-recovered GeneMark_model.83228_t, internal, 127468, 127515
-recovered GeneMark_model.83228_t, internal, 127686, 127734
-recovered GeneMark_model.83228_t, internal, 127995, 128201
-recovered GeneMark_model.83228_t, internal, 128770, 128783
-recovered GeneMark_model.83228_t, internal, 128819, 128845
-recovered GeneMark_model.83228_t, internal, 128865, 128874
Valid prediction for snap_scaffold_20-snap.2000-T1
Valid prediction for GeneMark_model.83213_t
Valid prediction for Augustus_model.g31814.t1
Valid prediction for Augustus_model.g31822.t1
Valid prediction for GeneMark_model.83217_t
Valid prediction for GeneMark_model.83222_t
Valid prediction for snap_scaffold_20-snap.1986-T1
Valid prediction for snap_scaffold_20-snap.1980-T1
Valid prediction for GeneMark_model.83225_t
Valid prediction for snap_scaffold_20-snap.1964-T1
Valid prediction for GlimmerHMM_glimmerT_47702-T1
Valid prediction for snap_scaffold_20-snap.1984-T1
Valid prediction for snap_scaffold_20-snap.1988-T1
Valid prediction for GeneMark_model.83239_t
Valid prediction for snap_scaffold_20-snap.1971-T1
Valid prediction for GlimmerHMM_glimmerT_47717-T1
Valid prediction for GlimmerHMM_glimmerT_47721-T1
Valid prediction for Augustus_model.g31823.t1
Valid prediction for GeneMark_model.83261_t
Valid prediction for GeneMark_model.83251_t
Valid prediction for snap_scaffold_20-snap.1967-T1
Valid prediction for snap_scaffold_20-snap.1992-T1
Valid prediction for snap_scaffold_20-snap.2008-T1
Couldn't classify 1750, 2094
Sorry, prediction pasa_asmbl_25979.p1 fails validation.
(GGT)	 GG	1750-2094	AA	AAA
Valid prediction for GeneMark_model.83257_t
Valid prediction for GlimmerHMM_glimmerT_47693-T1
Valid prediction for snap_scaffold_20-snap.1968-T1
Valid prediction for Augustus_model.g31819.t1
Valid prediction for GlimmerHMM_glimmerT_47722-T1
Couldn't classify 114901, 115090
Couldn't classify 119604, 119661
Sorry, prediction pasa_asmbl_27166.p2 fails validation.
(TAC)	 AG	114901-115090	GT	CGG
(AGC)	 AG	117361-117445	GT	AGG
(GGA)	 AG	119050-119208	GT	AAG
(CAG)	 AG	119604-119661	TA	GGT
-recovered pasa_asmbl_27166.p2, internal, 114901, 115090
-recovered pasa_asmbl_27166.p2, internal, 117361, 117445
-recovered pasa_asmbl_27166.p2, internal, 119050, 119208
Valid prediction for GeneMark_model.83259_t
Valid prediction for snap_scaffold_20-snap.2005-T1
Valid prediction for GeneMark_model.83236_t
Valid prediction for GlimmerHMM_glimmerT_47697-T1
Valid prediction for GlimmerHMM_glimmerT_47711-T1
Valid prediction for snap_scaffold_20-snap.1973-T1
Valid prediction for GlimmerHMM_glimmerT_47708-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15169, rend_intergenic: 7002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40740, rend_intergenic: 19983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47056, rend_intergenic: 40865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49465, rend_intergenic: 47502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73204, rend_intergenic: 68221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81415, rend_intergenic: 79638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91505, rend_intergenic: 81506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92119, rend_intergenic: 91522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97450, rend_intergenic: 95970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111913, rend_intergenic: 99417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126317, rend_intergenic: 122066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132114, rend_intergenic: 130541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149658, rend_intergenic: 143888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163009, rend_intergenic: 161697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216525, rend_intergenic: 193442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 190202, rend_intergenic: 190199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 218718
-exon list size: 943


building trellis

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20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 15169, rend_intergenic: 7002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40740, rend_intergenic: 19983  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47056, rend_intergenic: 40865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49465, rend_intergenic: 47502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73204, rend_intergenic: 68221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81415, rend_intergenic: 79638  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91505, rend_intergenic: 81506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92119, rend_intergenic: 91522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97450, rend_intergenic: 95970  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111913, rend_intergenic: 99417  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126317, rend_intergenic: 122066  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132114, rend_intergenic: 130541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149658, rend_intergenic: 143888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163009, rend_intergenic: 161697  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216525, rend_intergenic: 193442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 190202, rend_intergenic: 190199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 11255
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support