-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_884173-1124731 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_46498-T1 Valid prediction for GeneMark_model.80929_t Valid prediction for GeneMark_model.80900_t Valid prediction for GeneMark_model.80920_t Valid prediction for GeneMark_model.80925_t Valid prediction for HiQ_model.g31039.t1 Valid prediction for snap_scaffold_20-snap.214-T1 Valid prediction for GeneMark_model.80918_t Valid prediction for GlimmerHMM_glimmerT_46487-T1 Valid prediction for Augustus_model.g31040.t1 Valid prediction for GeneMark_model.80877_t Valid prediction for GeneMark_model.80935_t Valid prediction for GeneMark_model.80884_t Valid prediction for GlimmerHMM_glimmerT_46504-T1 Valid prediction for snap_scaffold_20-snap.204-T1 Valid prediction for GlimmerHMM_glimmerT_46481-T1 Valid prediction for GeneMark_model.80904_t Valid prediction for snap_scaffold_20-snap.212-T1 Valid prediction for snap_scaffold_20-snap.231-T1 Valid prediction for GlimmerHMM_glimmerT_46486-T1 Valid prediction for Augustus_model.g31027.t1 Valid prediction for Augustus_model.g31037.t1 Valid prediction for GlimmerHMM_glimmerT_46507-T1 Valid prediction for snap_scaffold_20-snap.226-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_20-snap.217-T1 Valid prediction for snap_scaffold_20-snap.251-T1 Valid prediction for snap_scaffold_20-snap.232-T1 Valid prediction for CodingQuarry_transcript_30341-T1 Valid prediction for GeneMark_model.80909_t Valid prediction for Augustus_model.g31025.t1 Valid prediction for GeneMark_model.80891_t Valid prediction for GeneMark_model.80907_t Valid prediction for GeneMark_model.80923_t Valid prediction for snap_scaffold_20-snap.244-T1 Valid prediction for HiQ_model.g31033.t1 Valid prediction for Augustus_model.g31047.t1 Valid prediction for GeneMark_model.80913_t Valid prediction for GlimmerHMM_glimmerT_46490-T1 Valid prediction for snap_scaffold_20-snap.249-T1 Valid prediction for GlimmerHMM_glimmerT_46491-T1 Valid prediction for snap_scaffold_20-snap.242-T1 Valid prediction for snap_scaffold_20-snap.236-T1 Valid prediction for GeneMark_model.80894_t Valid prediction for snap_scaffold_20-snap.229-T1 Valid prediction for snap_scaffold_20-snap.224-T1 Valid prediction for CodingQuarry_transcript_30339-T1 Valid prediction for snap_scaffold_20-snap.199-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for GeneMark_model.80932_t Valid prediction for GeneMark_model.80878_t Valid prediction for GlimmerHMM_glimmerT_46494-T1 Valid prediction for Augustus_model.g31032.t1 Valid prediction for Augustus_model.g31031.t1 Valid prediction for GlimmerHMM_glimmerT_46496-T1 Valid prediction for snap_scaffold_20-snap.211-T1 Valid prediction for GlimmerHMM_glimmerT_46500-T1 Couldn't classify 148549, 148656 Sorry, prediction CodingQuarry_transcript_30345-T1 fails validation. (ATG) TC 145215-145323 GT GAG (AGC) AG 146054-146181 GT AGG (GTG) AG 146685-146784 GT AGG (CCT) AG 146893-147026 GT AGG (TCT) GA 148549-148656 CC GAC -recovered CodingQuarry_transcript_30345-T1, initial, 145215, 145323 -recovered CodingQuarry_transcript_30345-T1, internal, 146054, 146181 -recovered CodingQuarry_transcript_30345-T1, internal, 146685, 146784 -recovered CodingQuarry_transcript_30345-T1, internal, 146893, 147026 Valid prediction for GlimmerHMM_glimmerT_46483-T1 Valid prediction for snap_scaffold_20-snap.234-T1 Valid prediction for GlimmerHMM_glimmerT_46495-T1 Valid prediction for snap_scaffold_20-snap.218-T1 Valid prediction for snap_scaffold_20-snap.203-T1 Couldn't classify 131759, 132172 Sorry, prediction pasa_asmbl_26459.p1 fails validation. (ATG) GG 131759-132172 TC AAT Valid prediction for GeneMark_model.80889_t Valid prediction for snap_scaffold_20-snap.247-T1 Valid prediction for GlimmerHMM_glimmerT_46505-T1 Valid prediction for Augustus_model.g31042.t1 Valid prediction for snap_scaffold_20-snap.233-T1 Valid prediction for Augustus_model.g31041.t1 Valid prediction for snap_scaffold_20-snap.197-T1 Valid prediction for snap_scaffold_20-snap.207-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.80875_t Valid prediction for GlimmerHMM_glimmerT_46499-T1 Valid prediction for snap_scaffold_20-snap.209-T1 Valid prediction for snap_scaffold_20-snap.202-T1 Valid prediction for GeneMark_model.80896_t Valid prediction for GlimmerHMM_glimmerT_46484-T1 Valid prediction for GeneMark_model.80885_t Valid prediction for GeneMark_model.80881_t Couldn't classify 121531, 121668 Couldn't classify 124113, 124199 Sorry, prediction pasa_asmbl_25556.p1 fails validation. (TCA) CT 121531-121668 GT TGG (AAC) AG 121871-121942 GT TGG (ATC) AG 124113-124199 GG GAG -recovered pasa_asmbl_25556.p1, internal, 121871, 121942 Valid prediction for Augustus_model.g31046.t1 Valid prediction for Augustus_model.g31030.t1 Valid prediction for GlimmerHMM_glimmerT_46482-T1 Valid prediction for GeneMark_model.80914_t Valid prediction for GeneMark_model.80916_t Valid prediction for pasa_asmbl_25562.p1 Couldn't classify 70085, 70196 Sorry, prediction GeneMark_model.80888_t fails validation. (TCC) AG 70085-70196 GT TGG (GTC) AG 70248-70371 GT TGG (TCG) AG 70416-70499 GT AGG (GGG) AG 70598-70605 GT CTG (AGA) AG 73159-73188 GT GTG (GGA) AG 73227-73298 GT GGG (AGA) AG 73323-73367 GT GAG (AGA) AG 73398-73415 GT GAG (AAG) AG 73438-73458 GT GAG (GCA) AG 73485-73562 GT GAG (AGA) AG 73584-73673 GT CAG (AGA) AG 73698-73754 GT GAG (AGG) AG 73778-73792 GT CAG (TGG) AG 73813-73854 GT GAG (AGA) AG 74269-74277 GT GAG (AGA) AG 76935-76943 GT GGG (GAG) AG 76977-76988 GT AGG (GGA) AG 77016-77027 GT GAG (ACT) AG 77055-77129 GT GGG (GCA) AG 77161-77169 GT GTG (GAG) AG 77201-77287 GT GTG (GAG) AG 77308-77331 GT GGG (AGA) AG 77353-77376 GT ATG (AGA) AG 77401-77415 GT ATG (AGA) AG 77438-77449 GT GGG (AGG) AG 77477-77487 GT GTG (ATG) AG 77674-77825 GT TCG (GAT) AG 78357-78398 GT AGG (GGT) AG 78870-78989 GG AGG add_exon() Sorry, GeneMark_model.80888_t 77674-77825-initial-1 is invalid. -recovered GeneMark_model.80888_t, initial, 77674, 77825 -recovered GeneMark_model.80888_t, terminal, 78870, 78989 -recovered GeneMark_model.80888_t, internal, 70085, 70196 -recovered GeneMark_model.80888_t, internal, 70248, 70371 -recovered GeneMark_model.80888_t, internal, 70416, 70499 -recovered GeneMark_model.80888_t, internal, 70598, 70605 -recovered GeneMark_model.80888_t, internal, 73159, 73188 -recovered GeneMark_model.80888_t, internal, 73227, 73298 -recovered GeneMark_model.80888_t, internal, 73323, 73367 -recovered GeneMark_model.80888_t, internal, 73398, 73415 -recovered GeneMark_model.80888_t, internal, 73438, 73458 -recovered GeneMark_model.80888_t, internal, 73485, 73562 -recovered GeneMark_model.80888_t, internal, 73584, 73673 -recovered GeneMark_model.80888_t, internal, 73698, 73754 -recovered GeneMark_model.80888_t, internal, 73778, 73792 -recovered GeneMark_model.80888_t, internal, 73813, 73854 -recovered GeneMark_model.80888_t, internal, 74269, 74277 -recovered GeneMark_model.80888_t, internal, 76935, 76943 -recovered GeneMark_model.80888_t, internal, 76977, 76988 -recovered GeneMark_model.80888_t, internal, 77016, 77027 -recovered GeneMark_model.80888_t, internal, 77055, 77129 -recovered GeneMark_model.80888_t, internal, 77161, 77169 -recovered GeneMark_model.80888_t, internal, 77201, 77287 -recovered GeneMark_model.80888_t, internal, 77308, 77331 -recovered GeneMark_model.80888_t, internal, 77353, 77376 -recovered GeneMark_model.80888_t, internal, 77401, 77415 -recovered GeneMark_model.80888_t, internal, 77438, 77449 -recovered GeneMark_model.80888_t, internal, 77477, 77487 -recovered GeneMark_model.80888_t, internal, 77674, 77825 -recovered GeneMark_model.80888_t, internal, 78357, 78398 Valid prediction for snap_scaffold_20-snap.213-T1 Valid prediction for Augustus_model.g31038.t1 Valid prediction for GlimmerHMM_glimmerT_46513-T1 Valid prediction for HiQ_model.g31034.t1 Valid prediction for GlimmerHMM_glimmerT_46501-T1 Valid prediction for snap_scaffold_20-snap.219-T1 Valid prediction for GlimmerHMM_glimmerT_46492-T1 Valid prediction for GeneMark_model.80937_t Valid prediction for Augustus_model.g31020.t1 Couldn't classify 80460, 80540 Sorry, prediction pasa_asmbl_25550.p1 fails validation. (CAG) AC 80460-80540 GT GGG (TAC) AG 80796-80861 GT AGG (GTG) AG 81649-81714 GT CTG (GAG) AG 81942-82030 GT AGG (ACT) AG 82757-82874 AA AGA -recovered pasa_asmbl_25550.p1, terminal, 82757, 82874 -recovered pasa_asmbl_25550.p1, internal, 80796, 80861 -recovered pasa_asmbl_25550.p1, internal, 81649, 81714 -recovered pasa_asmbl_25550.p1, internal, 81942, 82030 Valid prediction for GlimmerHMM_glimmerT_46506-T1 Valid prediction for snap_scaffold_20-snap.237-T1 Couldn't classify 76844, 76907 Couldn't classify 78870, 78941 Sorry, prediction pasa_asmbl_26369.p1 fails validation. (GCG) NT 76844-76907 GT AGG (ATG) AG 77674-77825 GT TCG (GAT) AG 78357-78398 GT AGG (GGT) AG 78870-78941 GG TTG add_exon() Sorry, pasa_asmbl_26369.p1 77674-77825-initial-1 is invalid. -recovered pasa_asmbl_26369.p1, initial, 77674, 77825 -recovered pasa_asmbl_26369.p1, internal, 77674, 77825 -recovered pasa_asmbl_26369.p1, internal, 78357, 78398 Valid prediction for GeneMark_model.80906_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 39420, 39902 Sorry, prediction pasa_asmbl_25561.p1 fails validation. (ACC) TC 39420-39902 TC CAT Valid prediction for GlimmerHMM_glimmerT_46510-T1 Valid prediction for CodingQuarry_transcript_30343-T1 Valid prediction for GlimmerHMM_glimmerT_46514-T1 Valid prediction for GeneMark_model.80898_t Valid prediction for GeneMark_model.80934_t Valid prediction for snap_scaffold_20-snap.250-T1 Valid prediction for Augustus_model.g31049.t1 Valid prediction for GeneMark_model.80912_t Valid prediction for GeneMark_model.80927_t Valid prediction for Augustus_model.g31043.t1 Valid prediction for Augustus_model.g31023.t1 Valid prediction for pasa_asmbl_26456.p1 Couldn't classify 179235, 179383 Sorry, prediction GeneMark_model.80887_t fails validation. (ACC) AG 179235-179383 GT GAG (GAC) AG 179518-179724 GT AAG (GTG) AG 179800-179959 GT CTG (GTG) AG 180115-180194 GT GAG (TGA) AG 180295-180385 AA AAA -recovered GeneMark_model.80887_t, terminal, 180115, 180194 -recovered GeneMark_model.80887_t, terminal, 180295, 180385 -recovered GeneMark_model.80887_t, internal, 179235, 179383 -recovered GeneMark_model.80887_t, internal, 179518, 179724 -recovered GeneMark_model.80887_t, internal, 179800, 179959 -recovered GeneMark_model.80887_t, internal, 180115, 180194 Valid prediction for snap_scaffold_20-snap.239-T1 Valid prediction for snap_scaffold_20-snap.210-T1 Valid prediction for GeneMark_model.80899_t Valid prediction for GeneMark_model.80930_t Valid prediction for Augustus_model.g31029.t1 Valid prediction for snap_scaffold_20-snap.235-T1 Sorry, intron length (3) is less than minimum required (10) Sorry, intron length (9) is less than minimum required (10) Valid prediction for GeneMark_model.80926_t Valid prediction for GeneMark_model.80876_t Valid prediction for pasa_asmbl_26464.p2 Valid prediction for snap_scaffold_20-snap.228-T1 Sorry, intron length (5) is less than minimum required (10) Valid prediction for Augustus_model.g31021.t1 Valid prediction for snap_scaffold_20-snap.215-T1 Valid prediction for snap_scaffold_20-snap.200-T1 Valid prediction for GeneMark_model.80919_t Valid prediction for Augustus_model.g31024.t1 Valid prediction for Augustus_model.g31022.t1 Valid prediction for snap_scaffold_20-snap.245-T1 Valid prediction for CodingQuarry_transcript_30348-T1 Couldn't classify 18833, 18967 Sorry, prediction pasa_asmbl_26468.p1 fails validation. (ATG) GC 14914-14922 GT AGG (GGT) AG 15381-15553 GT AGG (CAT) AG 16281-16423 GT AGG (GTG) AG 17045-17175 GT AGG (GAC) AG 17288-17419 GT AGG (CCC) AG 18237-18339 GT TGG (GCC) AG 18506-18639 GT AGG (ACC) AG 18833-18967 GG TCG -recovered pasa_asmbl_26468.p1, initial, 14914, 14922 -recovered pasa_asmbl_26468.p1, internal, 15381, 15553 -recovered pasa_asmbl_26468.p1, internal, 16281, 16423 -recovered pasa_asmbl_26468.p1, internal, 17045, 17175 -recovered pasa_asmbl_26468.p1, internal, 17288, 17419 -recovered pasa_asmbl_26468.p1, internal, 18237, 18339 -recovered pasa_asmbl_26468.p1, internal, 18506, 18639 Valid prediction for GlimmerHMM_glimmerT_46509-T1 Valid prediction for snap_scaffold_20-snap.198-T1 Valid prediction for GeneMark_model.80905_t Valid prediction for Augustus_model.g31050.t1 Valid prediction for GlimmerHMM_glimmerT_46518-T1 Valid prediction for Augustus_model.g31044.t1 Couldn't classify 49672, 50310 Sorry, prediction pasa_asmbl_26460.p1 fails validation. (ATG) TC 49672-50310 GA AGG Couldn't classify 24718, 24735 Sorry, prediction pasa_asmbl_26467.p1 fails validation. (AGG) TT 24718-24735 GT AGG (GCC) AG 24992-25170 GT AGG (ACC) AG 25950-26079 GT GCG (GAT) AG 26286-26444 GT TGG (GAG) AG 26980-27131 GT AGG (ATT) AG 27830-27923 CT GAC -recovered pasa_asmbl_26467.p1, terminal, 27830, 27923 -recovered pasa_asmbl_26467.p1, internal, 24992, 25170 -recovered pasa_asmbl_26467.p1, internal, 25950, 26079 -recovered pasa_asmbl_26467.p1, internal, 26286, 26444 -recovered pasa_asmbl_26467.p1, internal, 26980, 27131 Valid prediction for CodingQuarry_transcript_30346-T1 Valid prediction for GeneMark_model.80922_t Valid prediction for GeneMark_model.80883_t Valid prediction for snap_scaffold_20-snap.238-T1 Valid prediction for snap_scaffold_20-snap.243-T1 Valid prediction for GeneMark_model.80882_t Valid prediction for GeneMark_model.80880_t Valid prediction for snap_scaffold_20-snap.248-T1 Valid prediction for GeneMark_model.80917_t Valid prediction for GlimmerHMM_glimmerT_46493-T1 Valid prediction for GlimmerHMM_glimmerT_46515-T1 Valid prediction for Augustus_model.g31019.t1 Valid prediction for pasa_asmbl_26462.p1 Valid prediction for snap_scaffold_20-snap.222-T1 Valid prediction for snap_scaffold_20-snap.223-T1 Valid prediction for snap_scaffold_20-snap.225-T1 Valid prediction for snap_scaffold_20-snap.205-T1 Couldn't classify 3827, 4019 Couldn't classify 4444, 4574 Sorry, prediction pasa_asmbl_27190.p1 fails validation. (GAG) AG 3827-4019 GT AGG (GGG) AG 4444-4574 GT AGG -recovered pasa_asmbl_27190.p1, internal, 3827, 4019 -recovered pasa_asmbl_27190.p1, internal, 4444, 4574 Valid prediction for GeneMark_model.80892_t Valid prediction for GeneMark_model.80924_t Valid prediction for Augustus_model.g31051.t1 Valid prediction for GlimmerHMM_glimmerT_46516-T1 Valid prediction for GlimmerHMM_glimmerT_46485-T1 Valid prediction for CodingQuarry_transcript_30349-T1 Valid prediction for GeneMark_model.80938_t Valid prediction for Augustus_model.g31036.t1 Valid prediction for Augustus_model.g31028.t1 Valid prediction for GeneMark_model.80895_t Valid prediction for GeneMark_model.80921_t Valid prediction for GeneMark_model.80931_t Valid prediction for GeneMark_model.80893_t Valid prediction for GlimmerHMM_glimmerT_46502-T1 Valid prediction for Augustus_model.g31052.t1 Valid prediction for GeneMark_model.80928_t Valid prediction for GlimmerHMM_glimmerT_46517-T1 Valid prediction for GeneMark_model.80903_t Valid prediction for snap_scaffold_20-snap.241-T1 Valid prediction for HiQ_model.g31035.t1 Valid prediction for snap_scaffold_20-snap.240-T1 Valid prediction for GlimmerHMM_glimmerT_46508-T1 Valid prediction for snap_scaffold_20-snap.220-T1 Valid prediction for GeneMark_model.80936_t Valid prediction for GlimmerHMM_glimmerT_46488-T1 Valid prediction for snap_scaffold_20-snap.216-T1 Valid prediction for snap_scaffold_20-snap.230-T1 Valid prediction for GeneMark_model.80879_t Valid prediction for GlimmerHMM_glimmerT_46489-T1 Valid prediction for HiQ_model.g31048.t1 Valid prediction for GeneMark_model.80901_t Valid prediction for snap_scaffold_20-snap.196-T1 Valid prediction for GeneMark_model.80897_t Valid prediction for GlimmerHMM_glimmerT_46503-T1 Valid prediction for snap_scaffold_20-snap.221-T1 Valid prediction for snap_scaffold_20-snap.201-T1 Valid prediction for snap_scaffold_20-snap.227-T1 Valid prediction for GeneMark_model.80908_t Valid prediction for GeneMark_model.80915_t Valid prediction for GeneMark_model.80910_t Valid prediction for snap_scaffold_20-snap.208-T1 Valid prediction for Augustus_model.g31045.t1 Valid prediction for snap_scaffold_20-snap.252-T1 Valid prediction for snap_scaffold_20-snap.206-T1 Valid prediction for Augustus_model.g31026.t1 Valid prediction for CodingQuarry_transcript_30347-T1 Valid prediction for snap_scaffold_20-snap.246-T1 Valid prediction for GeneMark_model.80890_t Valid prediction for GlimmerHMM_glimmerT_46511-T1 Valid prediction for GlimmerHMM_glimmerT_46497-T1 Valid prediction for GlimmerHMM_glimmerT_46512-T1 Valid prediction for GlimmerHMM_glimmerT_46480-T1 Valid prediction for GeneMark_model.80933_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7550, rend_intergenic: 6390 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11388, rend_intergenic: 8636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14614, rend_intergenic: 12512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27134, rend_intergenic: 22393 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41336, rend_intergenic: 39895 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50753, rend_intergenic: 48689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53955, rend_intergenic: 50808 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77133, rend_intergenic: 60175 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83849, rend_intergenic: 77194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125062, rend_intergenic: 85129 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136648, rend_intergenic: 130133 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139956, rend_intergenic: 138104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144373, rend_intergenic: 140025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148656, rend_intergenic: 145107 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176526, rend_intergenic: 173208 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183763, rend_intergenic: 182069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191948, rend_intergenic: 191871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195366, rend_intergenic: 192038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211648, rend_intergenic: 199704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218790, rend_intergenic: 212637 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232433, rend_intergenic: 219552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235349, rend_intergenic: 232444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237317, rend_intergenic: 235473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 240559 -exon list size: 1071 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 57 predictions from path traversal Error with prediction: snap lend_intergenic: 7550, rend_intergenic: 6390 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11388, rend_intergenic: 8636 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14614, rend_intergenic: 12512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27134, rend_intergenic: 22393 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41336, rend_intergenic: 39895 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50753, rend_intergenic: 48689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53955, rend_intergenic: 50808 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77133, rend_intergenic: 60175 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83849, rend_intergenic: 77194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125062, rend_intergenic: 85129 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136648, rend_intergenic: 130133 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139956, rend_intergenic: 138104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144373, rend_intergenic: 140025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148656, rend_intergenic: 145107 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176526, rend_intergenic: 173208 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183763, rend_intergenic: 182069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191948, rend_intergenic: 191871 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195366, rend_intergenic: 192038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211648, rend_intergenic: 199704 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218790, rend_intergenic: 212637 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232433, rend_intergenic: 219552 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235349, rend_intergenic: 232444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237317, rend_intergenic: 235473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 46 predictions persist after filtering for low support