-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_652779-889926 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.172-T1 Couldn't classify 70514, 70585 Sorry, prediction pasa_asmbl_25529.p1 fails validation. (AGA) AG 70514-70585 GT TGG (GTC) AG 71636-72961 GT AGG (GCG) AG 73445-73510 GT CGG (GCG) AG 73827-74132 GT GAG -recovered pasa_asmbl_25529.p1, terminal, 73827, 74132 -recovered pasa_asmbl_25529.p1, internal, 70514, 70585 -recovered pasa_asmbl_25529.p1, internal, 71636, 72961 -recovered pasa_asmbl_25529.p1, internal, 73445, 73510 -recovered pasa_asmbl_25529.p1, internal, 73827, 74132 Valid prediction for GeneMark_model.80826_t Valid prediction for GeneMark_model.80858_t Valid prediction for Augustus_model.g31013.t1 Valid prediction for GlimmerHMM_glimmerT_46453-T1 Valid prediction for GeneMark_model.80839_t Couldn't classify 132773, 132812 Sorry, prediction pasa_asmbl_25531.p1 fails validation. (CTG) AC 132773-132812 GT CGG (GTG) AG 133128-133233 GT CGG (AGA) AG 134353-134644 TT GAT -recovered pasa_asmbl_25531.p1, terminal, 134353, 134644 -recovered pasa_asmbl_25531.p1, internal, 133128, 133233 Valid prediction for Augustus_model.g30997.t1 Valid prediction for snap_scaffold_20-snap.189-T1 Valid prediction for Augustus_model.g31011.t1 Valid prediction for snap_scaffold_20-snap.175-T1 Couldn't classify 35908, 36024 Couldn't classify 36639, 36890 Sorry, prediction pasa_asmbl_26374.p1 fails validation. (GCA) CG 35908-36024 GT TGG (GTA) AG 36639-36890 AG GGA Valid prediction for snap_scaffold_20-snap.191-T1 Valid prediction for snap_scaffold_20-snap.163-T1 Couldn't classify 184253, 184339 Sorry, prediction pasa_asmbl_25536.p1 fails validation. (ATG) AC 183092-183196 GT CGG (GAG) AG 183382-183530 GT GGG (TGG) AG 183962-184052 GT AGG (GTG) AG 184253-184339 AG GCA -recovered pasa_asmbl_25536.p1, initial, 183092, 183196 -recovered pasa_asmbl_25536.p1, internal, 183382, 183530 -recovered pasa_asmbl_25536.p1, internal, 183962, 184052 Couldn't classify 188812, 189354 Sorry, prediction pasa_asmbl_25539.p1 fails validation. (CAC) AC 188812-189354 TA GAT Valid prediction for GeneMark_model.80854_t Valid prediction for GeneMark_model.80837_t Valid prediction for GlimmerHMM_glimmerT_46476-T1 Couldn't classify 71657, 72379 Couldn't classify 72554, 72985 Sorry, prediction CodingQuarry_transcript_30333-T1 fails validation. (ATG) GG 71657-72379 AA AGA (AAG) AA 72554-72985 AA AGA Valid prediction for GlimmerHMM_glimmerT_46463-T1 Couldn't classify 218060, 218350 Sorry, prediction pasa_asmbl_25548.p1 fails validation. (CCT) CT 218060-218350 GT AGG (GCT) AG 218707-218816 GT CAG (CGG) AG 219058-219143 GT CAG (ACA) AG 219229-219453 GT GGG (CTC) AG 219765-219934 GT AGG (GCT) AG 220149-220157 GG GAG -recovered pasa_asmbl_25548.p1, terminal, 220149, 220157 -recovered pasa_asmbl_25548.p1, internal, 218707, 218816 -recovered pasa_asmbl_25548.p1, internal, 219058, 219143 -recovered pasa_asmbl_25548.p1, internal, 219229, 219453 -recovered pasa_asmbl_25548.p1, internal, 219765, 219934 Valid prediction for GlimmerHMM_glimmerT_46467-T1 Valid prediction for GlimmerHMM_glimmerT_46465-T1 Valid prediction for GeneMark_model.80860_t Valid prediction for snap_scaffold_20-snap.174-T1 Couldn't classify 35884, 36024 Sorry, prediction GeneMark_model.80819_t fails validation. (GTG) AG 35884-36024 GT TGG (GTA) AG 36639-37012 GT CTG (TTT) AG 37338-37344 GT AAG -recovered GeneMark_model.80819_t, terminal, 37338, 37344 -recovered GeneMark_model.80819_t, internal, 35884, 36024 -recovered GeneMark_model.80819_t, internal, 36639, 37012 -recovered GeneMark_model.80819_t, internal, 37338, 37344 Valid prediction for GeneMark_model.80873_t Valid prediction for GlimmerHMM_glimmerT_46468-T1 Valid prediction for snap_scaffold_20-snap.144-T1 Valid prediction for GlimmerHMM_glimmerT_46475-T1 Valid prediction for GlimmerHMM_glimmerT_46473-T1 Valid prediction for snap_scaffold_20-snap.157-T1 Valid prediction for snap_scaffold_20-snap.162-T1 Valid prediction for GeneMark_model.80849_t Valid prediction for CodingQuarry_transcript_30337-T1 Valid prediction for snap_scaffold_20-snap.180-T1 Valid prediction for GlimmerHMM_glimmerT_46479-T1 Valid prediction for GeneMark_model.80830_t Valid prediction for GeneMark_model.80856_t Valid prediction for GlimmerHMM_glimmerT_46459-T1 Valid prediction for GlimmerHMM_glimmerT_46477-T1 Valid prediction for snap_scaffold_20-snap.160-T1 Valid prediction for Augustus_model.g31007.t1 Valid prediction for GeneMark_model.80835_t Valid prediction for CodingQuarry_transcript_30338-T1 Valid prediction for snap_scaffold_20-snap.183-T1 Valid prediction for Augustus_model.g31017.t1 Valid prediction for snap_scaffold_20-snap.155-T1 Valid prediction for HiQ_model.g31010.t1 Valid prediction for GeneMark_model.80864_t Valid prediction for snap_scaffold_20-snap.143-T1 Valid prediction for snap_scaffold_20-snap.195-T1 Valid prediction for GlimmerHMM_glimmerT_46454-T1 Valid prediction for Augustus_model.g31016.t1 Valid prediction for GeneMark_model.80866_t Valid prediction for GlimmerHMM_glimmerT_46450-T1 Couldn't classify 211970, 212122 Couldn't classify 216181, 216310 Couldn't classify 216385, 216423 Couldn't classify 217725, 217834 Sorry, prediction pasa_asmbl_25546.p1 fails validation. (ACT) AT 211970-212122 GT AGG (ATT) AG 213049-213151 GT AGG (ACC) AG 213265-213324 GT GTG (CCA) AG 214228-214264 GT AGG (TGT) AG 214367-214425 GT AAG (TCA) AG 214574-214645 GT AGG (ACA) AG 214809-214866 GT CAG (GAA) AG 216181-216310 AT TCA (ATC) AC 216385-216423 GT AGG (GAG) AG 216709-216807 GT AGG (CAA) AG 217126-217245 GT ATG (GTC) AG 217333-217435 GT TGG (ACG) AG 217725-217834 GA AGG add_exon() Sorry, pasa_asmbl_25546.p1 214367-214425-terminal-2 is invalid. -recovered pasa_asmbl_25546.p1, terminal, 214367, 214425 -recovered pasa_asmbl_25546.p1, internal, 213049, 213151 -recovered pasa_asmbl_25546.p1, internal, 213265, 213324 -recovered pasa_asmbl_25546.p1, internal, 214228, 214264 -recovered pasa_asmbl_25546.p1, internal, 214367, 214425 -recovered pasa_asmbl_25546.p1, internal, 214574, 214645 -recovered pasa_asmbl_25546.p1, internal, 214809, 214866 -recovered pasa_asmbl_25546.p1, internal, 216709, 216807 -recovered pasa_asmbl_25546.p1, internal, 217126, 217245 -recovered pasa_asmbl_25546.p1, internal, 217333, 217435 Valid prediction for GlimmerHMM_glimmerT_46449-T1 Couldn't classify 24077, 24213 Sorry, prediction GeneMark_model.80817_t fails validation. (ACA) AG 24077-24213 GT TGG (CGG) AG 24513-24543 GT CCG (AGT) AG 24810-24831 AA AAA -recovered GeneMark_model.80817_t, terminal, 24810, 24831 -recovered GeneMark_model.80817_t, internal, 24077, 24213 -recovered GeneMark_model.80817_t, internal, 24513, 24543 Valid prediction for GeneMark_model.80869_t Couldn't classify 16862, 17017 Sorry, prediction GeneMark_model.80816_t fails validation. (ATG) GG 12936-13067 GT AGG (AAA) AG 13518-13650 GT GGG (GTG) AG 14177-14286 GT TGG (GTA) AG 16862-17017 GT AAG -recovered GeneMark_model.80816_t, initial, 12936, 13067 -recovered GeneMark_model.80816_t, internal, 13518, 13650 -recovered GeneMark_model.80816_t, internal, 14177, 14286 -recovered GeneMark_model.80816_t, internal, 16862, 17017 Valid prediction for GlimmerHMM_glimmerT_46464-T1 Valid prediction for GlimmerHMM_glimmerT_46470-T1 Couldn't classify 70917, 71019 Couldn't classify 71748, 72961 Sorry, prediction CodingQuarry_transcript_30334-T1 fails validation. (ATG) GG 70917-71019 AG GAA (AGA) CG 71748-72961 GT AGG (GCG) AG 73445-73636 AG AGA -recovered CodingQuarry_transcript_30334-T1, terminal, 73445, 73636 Valid prediction for GeneMark_model.80832_t Valid prediction for GeneMark_model.80840_t Valid prediction for GeneMark_model.80823_t Valid prediction for snap_scaffold_20-snap.154-T1 Valid prediction for GeneMark_model.80814_t Valid prediction for snap_scaffold_20-snap.168-T1 Couldn't classify 70917, 71019 Couldn't classify 71748, 72379 Couldn't classify 72554, 72961 Sorry, prediction CodingQuarry_transcript_30335-T1 fails validation. (ATG) GG 70917-71019 AG GAA (AGA) CG 71748-72379 AA AGA (AAG) AA 72554-72961 GT AGG (GCG) AG 73445-73510 GT CGG (GCG) AG 73827-74132 GT GAG -recovered CodingQuarry_transcript_30335-T1, terminal, 73827, 74132 -recovered CodingQuarry_transcript_30335-T1, internal, 73445, 73510 -recovered CodingQuarry_transcript_30335-T1, internal, 73827, 74132 Valid prediction for HiQ_model.g31015.t1 Valid prediction for snap_scaffold_20-snap.164-T1 Valid prediction for snap_scaffold_20-snap.139-T1 Valid prediction for snap_scaffold_20-snap.142-T1 Valid prediction for Augustus_model.g30998.t1 Valid prediction for pasa_asmbl_25542.p1 Valid prediction for GeneMark_model.80845_t Valid prediction for snap_scaffold_20-snap.170-T1 Valid prediction for snap_scaffold_20-snap.158-T1 Valid prediction for snap_scaffold_20-snap.192-T1 Valid prediction for snap_scaffold_20-snap.150-T1 Valid prediction for GeneMark_model.80821_t Valid prediction for snap_scaffold_20-snap.181-T1 Valid prediction for CodingQuarry_transcript_30336-T1 Valid prediction for GlimmerHMM_glimmerT_46472-T1 Couldn't classify 190195, 190362 Couldn't classify 192973, 193117 Sorry, prediction pasa_asmbl_25540.p1 fails validation. (CGT) CG 190195-190362 GT AGG (GTG) AG 192013-192236 GT AGG (TGT) AG 192973-193117 AC CCA -recovered pasa_asmbl_25540.p1, internal, 192013, 192236 Valid prediction for snap_scaffold_20-snap.177-T1 Valid prediction for snap_scaffold_20-snap.145-T1 Valid prediction for Augustus_model.g31014.t1 Valid prediction for Augustus_model.g31000.t1 Valid prediction for GeneMark_model.80862_t Valid prediction for GeneMark_model.80851_t Valid prediction for GeneMark_model.80844_t Valid prediction for GlimmerHMM_glimmerT_46471-T1 Valid prediction for snap_scaffold_20-snap.159-T1 Valid prediction for GlimmerHMM_glimmerT_46474-T1 Valid prediction for snap_scaffold_20-snap.165-T1 Valid prediction for GeneMark_model.80834_t Valid prediction for GeneMark_model.80842_t Valid prediction for snap_scaffold_20-snap.185-T1 Valid prediction for GeneMark_model.80871_t Valid prediction for snap_scaffold_20-snap.148-T1 Couldn't classify 205653, 205757 Couldn't classify 209378, 209529 Couldn't classify 210501, 210533 Sorry, prediction pasa_asmbl_25544.p1 fails validation. (AGA) AC 205653-205757 GT TGG (ATG) AG 206167-206325 GT AGG (GTG) AG 206724-206876 GT AGG (ATC) AG 207491-207604 GT AGG (GTC) AG 208186-208353 GT AGG (ACC) AG 208905-209052 GT AGG (CCA) AG 209378-209529 AT ACA (TTC) AC 210501-210533 AG AGA -recovered pasa_asmbl_25544.p1, initial, 206167, 206325 -recovered pasa_asmbl_25544.p1, internal, 206167, 206325 -recovered pasa_asmbl_25544.p1, internal, 206724, 206876 -recovered pasa_asmbl_25544.p1, internal, 207491, 207604 -recovered pasa_asmbl_25544.p1, internal, 208186, 208353 -recovered pasa_asmbl_25544.p1, internal, 208905, 209052 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.80868_t Valid prediction for GlimmerHMM_glimmerT_46448-T1 Valid prediction for GeneMark_model.80825_t Valid prediction for GlimmerHMM_glimmerT_46451-T1 Valid prediction for GeneMark_model.80850_t Valid prediction for GeneMark_model.80865_t Valid prediction for GlimmerHMM_glimmerT_46457-T1 Couldn't classify 77668, 78212 Sorry, prediction pasa_asmbl_26453.p1 fails validation. (ATG) AA 74759-74854 GT AGG (CTG) AG 75329-75426 GT GGG (CCA) AG 75711-75849 GT AGG (GTG) AG 76454-76560 GT AAG (TAC) AG 76818-76963 GT AGG (GCA) AG 77218-77379 GT TGG (GTG) AG 77668-78212 CA AGC -recovered pasa_asmbl_26453.p1, initial, 74759, 74854 -recovered pasa_asmbl_26453.p1, internal, 75329, 75426 -recovered pasa_asmbl_26453.p1, internal, 75711, 75849 -recovered pasa_asmbl_26453.p1, internal, 76454, 76560 -recovered pasa_asmbl_26453.p1, internal, 76818, 76963 -recovered pasa_asmbl_26453.p1, internal, 77218, 77379 Valid prediction for snap_scaffold_20-snap.141-T1 Valid prediction for GeneMark_model.80815_t Valid prediction for Augustus_model.g31018.t1 Valid prediction for snap_scaffold_20-snap.153-T1 Valid prediction for snap_scaffold_20-snap.186-T1 Valid prediction for GeneMark_model.80833_t Valid prediction for snap_scaffold_20-snap.151-T1 Valid prediction for snap_scaffold_20-snap.187-T1 Valid prediction for GeneMark_model.80824_t Valid prediction for snap_scaffold_20-snap.173-T1 Valid prediction for snap_scaffold_20-snap.140-T1 Valid prediction for GeneMark_model.80827_t Valid prediction for snap_scaffold_20-snap.166-T1 Valid prediction for snap_scaffold_20-snap.171-T1 Valid prediction for GeneMark_model.80857_t Valid prediction for GeneMark_model.80859_t Valid prediction for GlimmerHMM_glimmerT_46460-T1 Valid prediction for Augustus_model.g31003.t1 Valid prediction for Augustus_model.g31012.t1 Valid prediction for GeneMark_model.80822_t Valid prediction for Augustus_model.g30999.t1 Valid prediction for snap_scaffold_20-snap.184-T1 Valid prediction for snap_scaffold_20-snap.194-T1 Valid prediction for Augustus_model.g31009.t1 Valid prediction for GeneMark_model.80829_t Valid prediction for snap_scaffold_20-snap.176-T1 Couldn't classify 225096, 225248 Couldn't classify 227851, 227901 Sorry, prediction pasa_asmbl_26446.p1 fails validation. (CTA) GT 225096-225248 GT AGG (AAC) AG 225453-225586 GT AGG (ACG) AG 226110-226240 GT CGG (GTT) AG 227170-227329 GT AGG (CAC) AG 227518-227689 GT CGG (AGC) AG 227851-227901 GC ACG -recovered pasa_asmbl_26446.p1, internal, 225453, 225586 -recovered pasa_asmbl_26446.p1, internal, 226110, 226240 -recovered pasa_asmbl_26446.p1, internal, 227170, 227329 -recovered pasa_asmbl_26446.p1, internal, 227518, 227689 -recovered pasa_asmbl_26446.p1, internal, 227851, 227901 Valid prediction for Augustus_model.g31008.t1 Valid prediction for GeneMark_model.80852_t Valid prediction for GeneMark_model.80836_t Valid prediction for Augustus_model.g31004.t1 Valid prediction for snap_scaffold_20-snap.182-T1 Couldn't classify 156558, 156818 Sorry, prediction pasa_asmbl_26448.p1 fails validation. (TTT) AG 156558-156818 GT AGG (GAC) AG 157589-157769 GT GGG (GTA) AG 158261-158430 AC AAA -recovered pasa_asmbl_26448.p1, terminal, 158261, 158430 -recovered pasa_asmbl_26448.p1, internal, 156558, 156818 -recovered pasa_asmbl_26448.p1, internal, 157589, 157769 Valid prediction for GeneMark_model.80872_t Valid prediction for GlimmerHMM_glimmerT_46462-T1 Valid prediction for snap_scaffold_20-snap.156-T1 Valid prediction for GlimmerHMM_glimmerT_46466-T1 Valid prediction for GlimmerHMM_glimmerT_46456-T1 Valid prediction for snap_scaffold_20-snap.152-T1 Valid prediction for GeneMark_model.80828_t Valid prediction for GeneMark_model.80831_t Valid prediction for GlimmerHMM_glimmerT_46452-T1 Valid prediction for GeneMark_model.80870_t Valid prediction for Augustus_model.g31005.t1 Couldn't classify 136603, 136871 Couldn't classify 137498, 137576 Sorry, prediction pasa_asmbl_27228.p1 fails validation. (ACC) AG 136603-136871 GT GGG (GTT) AG 137498-137576 GT AGG -recovered pasa_asmbl_27228.p1, internal, 136603, 136871 -recovered pasa_asmbl_27228.p1, internal, 137498, 137576 Valid prediction for GlimmerHMM_glimmerT_46478-T1 Couldn't classify 121622, 121706 Couldn't classify 122892, 123068 Sorry, prediction pasa_asmbl_26451.p1 fails validation. (AAG) CC 121622-121706 GT CAG (CCC) AG 121917-122010 GT AAG (GTT) AG 122450-122552 GT AGG (GGT) AG 122892-123068 CA GGC -recovered pasa_asmbl_26451.p1, internal, 121917, 122010 -recovered pasa_asmbl_26451.p1, internal, 122450, 122552 Valid prediction for snap_scaffold_20-snap.190-T1 Valid prediction for GeneMark_model.80813_t Valid prediction for GeneMark_model.80848_t Valid prediction for snap_scaffold_20-snap.161-T1 Valid prediction for snap_scaffold_20-snap.188-T1 Valid prediction for GeneMark_model.80867_t Valid prediction for GeneMark_model.80863_t Valid prediction for GeneMark_model.80838_t Valid prediction for snap_scaffold_20-snap.147-T1 Valid prediction for GlimmerHMM_glimmerT_46469-T1 Valid prediction for snap_scaffold_20-snap.149-T1 Valid prediction for Augustus_model.g31001.t1 Valid prediction for GeneMark_model.80820_t Valid prediction for GlimmerHMM_glimmerT_46461-T1 Valid prediction for snap_scaffold_20-snap.146-T1 Valid prediction for GeneMark_model.80841_t Valid prediction for Augustus_model.g31002.t1 Valid prediction for GlimmerHMM_glimmerT_46455-T1 Valid prediction for Augustus_model.g31006.t1 Valid prediction for GeneMark_model.80853_t Valid prediction for Augustus_model.g30996.t1 Valid prediction for snap_scaffold_20-snap.179-T1 Valid prediction for GlimmerHMM_glimmerT_46458-T1 Valid prediction for snap_scaffold_20-snap.167-T1 Couldn't classify 210661, 210774 Sorry, prediction GeneMark_model.80818_t fails validation. (AAA) AG 210661-210774 GT CAG (GCA) AG 211354-211386 GT GAG (AGA) AG 211422-211487 GT GGG (GTA) AG 211508-211520 AA AAA -recovered GeneMark_model.80818_t, terminal, 211508, 211520 -recovered GeneMark_model.80818_t, internal, 210661, 210774 -recovered GeneMark_model.80818_t, internal, 211354, 211386 -recovered GeneMark_model.80818_t, internal, 211422, 211487 Valid prediction for snap_scaffold_20-snap.193-T1 Valid prediction for snap_scaffold_20-snap.178-T1 Valid prediction for GeneMark_model.80855_t Valid prediction for GeneMark_model.80843_t Valid prediction for GeneMark_model.80861_t Valid prediction for snap_scaffold_20-snap.169-T1 Valid prediction for GeneMark_model.80847_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 38038, rend_intergenic: 5472 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52180, rend_intergenic: 38160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59628, rend_intergenic: 54019 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75038, rend_intergenic: 70869 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80690, rend_intergenic: 78719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96089, rend_intergenic: 84532 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110701, rend_intergenic: 96666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131797, rend_intergenic: 111842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138999, rend_intergenic: 131966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140931, rend_intergenic: 140126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142045, rend_intergenic: 141315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148829, rend_intergenic: 146794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153126, rend_intergenic: 149740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161803, rend_intergenic: 153511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170319, rend_intergenic: 164116 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178865, rend_intergenic: 172438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187816, rend_intergenic: 181188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199900, rend_intergenic: 190153 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210242, rend_intergenic: 204245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223338, rend_intergenic: 213013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 237148 -exon list size: 1054 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 39 predictions from path traversal Error with prediction: snap lend_intergenic: 38038, rend_intergenic: 5472 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52180, rend_intergenic: 38160 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59628, rend_intergenic: 54019 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75038, rend_intergenic: 70869 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 80690, rend_intergenic: 78719 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96089, rend_intergenic: 84532 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110701, rend_intergenic: 96666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131797, rend_intergenic: 111842 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138999, rend_intergenic: 131966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140931, rend_intergenic: 140126 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142045, rend_intergenic: 141315 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148829, rend_intergenic: 146794 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153126, rend_intergenic: 149740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161803, rend_intergenic: 153511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170319, rend_intergenic: 164116 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 178865, rend_intergenic: 172438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187816, rend_intergenic: 181188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 199900, rend_intergenic: 190153 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210242, rend_intergenic: 204245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223338, rend_intergenic: 213013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 32 predictions persist after filtering for low support