-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_6291317-6417509

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_47266-T1
Valid prediction for GeneMark_model.82613_t
Valid prediction for GlimmerHMM_glimmerT_47273-T1
Valid prediction for GeneMark_model.82623_t
Valid prediction for snap_scaffold_20-snap.1412-T1
Valid prediction for GeneMark_model.82610_t
Valid prediction for GeneMark_model.82605_t
Valid prediction for GeneMark_model.82609_t
Valid prediction for GlimmerHMM_glimmerT_47264-T1
Valid prediction for GeneMark_model.82620_t
Valid prediction for GeneMark_model.82625_t
Valid prediction for snap_scaffold_20-snap.1398-T1
Valid prediction for snap_scaffold_20-snap.1411-T1
Valid prediction for GeneMark_model.82602_t
Valid prediction for Augustus_model.g31523.t1
Valid prediction for snap_scaffold_20-snap.1402-T1
Valid prediction for GlimmerHMM_glimmerT_47275-T1
Valid prediction for snap_scaffold_20-snap.1408-T1
Valid prediction for GeneMark_model.82618_t
Valid prediction for snap_scaffold_20-snap.1410-T1
Valid prediction for GeneMark_model.82607_t
Valid prediction for GeneMark_model.82615_t
Valid prediction for GeneMark_model.82596_t
Valid prediction for snap_scaffold_20-snap.1395-T1
Valid prediction for GlimmerHMM_glimmerT_47274-T1
Valid prediction for GeneMark_model.82592_t
Valid prediction for snap_scaffold_20-snap.1404-T1
Valid prediction for GeneMark_model.82598_t
Valid prediction for GlimmerHMM_glimmerT_47265-T1
Valid prediction for GlimmerHMM_glimmerT_47276-T1
Valid prediction for GlimmerHMM_glimmerT_47278-T1
Valid prediction for GeneMark_model.82600_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47270-T1
Valid prediction for snap_scaffold_20-snap.1409-T1
Valid prediction for GeneMark_model.82608_t
Valid prediction for GeneMark_model.82612_t
Valid prediction for GeneMark_model.82595_t
Valid prediction for snap_scaffold_20-snap.1394-T1
Valid prediction for snap_scaffold_20-snap.1400-T1
Valid prediction for snap_scaffold_20-snap.1413-T1
Valid prediction for GeneMark_model.82606_t
Valid prediction for snap_scaffold_20-snap.1392-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1393-T1
Valid prediction for snap_scaffold_20-snap.1407-T1
Valid prediction for GlimmerHMM_glimmerT_47267-T1
Valid prediction for GeneMark_model.82590_t
Valid prediction for GeneMark_model.82594_t
Valid prediction for snap_scaffold_20-snap.1405-T1
Valid prediction for snap_scaffold_20-snap.1406-T1
Valid prediction for GeneMark_model.82603_t
Valid prediction for GeneMark_model.82599_t
Valid prediction for GlimmerHMM_glimmerT_47272-T1
Valid prediction for GeneMark_model.82619_t
Valid prediction for GlimmerHMM_glimmerT_47263-T1
Valid prediction for GlimmerHMM_glimmerT_47268-T1
Valid prediction for Augustus_model.g31521.t1
Valid prediction for GeneMark_model.82601_t
Valid prediction for GlimmerHMM_glimmerT_47269-T1
Valid prediction for Augustus_model.g31520.t1
Valid prediction for GlimmerHMM_glimmerT_47279-T1
Valid prediction for GeneMark_model.82597_t
Valid prediction for GeneMark_model.82616_t
Valid prediction for GeneMark_model.82614_t
Valid prediction for snap_scaffold_20-snap.1414-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.82624_t
Valid prediction for GeneMark_model.82593_t
Valid prediction for GeneMark_model.82622_t
Valid prediction for GeneMark_model.82621_t
Valid prediction for GeneMark_model.82604_t
Valid prediction for GeneMark_model.82617_t
Valid prediction for GlimmerHMM_glimmerT_47277-T1
Valid prediction for Augustus_model.g31524.t1
Valid prediction for Augustus_model.g31522.t1
Valid prediction for GlimmerHMM_glimmerT_47271-T1
Valid prediction for snap_scaffold_20-snap.1401-T1
Valid prediction for GeneMark_model.82611_t
Valid prediction for snap_scaffold_20-snap.1397-T1
Valid prediction for snap_scaffold_20-snap.1396-T1
Valid prediction for snap_scaffold_20-snap.1399-T1
Valid prediction for snap_scaffold_20-snap.1403-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 37389, rend_intergenic: 32721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43993, rend_intergenic: 38692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68134, rend_intergenic: 61993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69420, rend_intergenic: 68822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70529, rend_intergenic: 69470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115668, rend_intergenic: 105519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 126193
-exon list size: 392


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.5    
2.8    
3.0    
3.3    
3.6    
3.8    
4.1    
4.3    
4.6    
4.8    
5.1    
5.3    
5.6    
5.8    
6.1    
6.3    
6.6    
6.9    
7.1    
7.4    
7.6    
7.9    
8.1    
8.4    
8.6    
8.9    
9.1    
9.4    
9.6    
9.9    
10.2    
10.4    
10.7    
10.9    
11.2    
11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
12.9    
13.2    
13.5    
13.7    
14.0    
14.2    
14.5    
14.7    
15.0    
15.2    
15.5    
15.7    
16.0    
16.2    
16.5    
16.8    
17.0    
17.3    
17.5    
17.8    
18.0    
18.3    
18.5    
18.8    
19.0    
19.3    
19.5    
19.8    
20.1    
20.3    
20.6    
20.8    
21.1    
21.3    
21.6    
21.8    
22.1    
22.3    
22.6    
22.8    
23.1    
23.4    
23.6    
23.9    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
26.1    
26.4    
26.6    
26.9    
27.2    
27.4    
27.7    
27.9    
28.2    
28.4    
28.7    
28.9    
29.2    
29.4    
29.7    
29.9    
30.2    
30.5    
30.7    
31.0    
31.2    
31.5    
31.7    
32.0    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.5    
34.8    
35.0    
35.3    
35.5    
35.8    
36.0    
36.3    
36.5    
36.8    
37.1    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.3    
39.6    
39.8    
40.1    
40.4    
40.6    
40.9    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.6    
42.9    
43.1    
43.4    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.7    
47.0    
47.2    
47.5    
47.7    
48.0    
48.2    
48.5    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.5    
51.8    
52.0    
52.3    
52.5    
52.8    
53.0    
53.3    
53.6    
53.8    
54.1    
54.3    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.6    
56.9    
57.1    
57.4    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.1    
59.4    
59.6    
59.9    
60.2    
60.4    
60.7    
60.9    
61.2    
61.4    
61.7    
61.9    
62.2    
62.4    
62.7    
62.9    
63.2    
63.5    
63.7    
64.0    
64.2    
64.5    
64.7    
65.0    
65.2    
65.5    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.0    
68.3    
68.5    
68.8    
69.0    
69.3    
69.5    
69.8    
70.1    
70.3    
70.6    
70.8    
71.1    
71.3    
71.6    
71.8    
72.1    
72.3    
72.6    
72.8    
73.1    
73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.9    
75.1    
75.4    
75.6    
75.9    
76.1    
76.4    
76.6    
76.9    
77.2    
77.4    
77.7    
77.9    
78.2    
78.4    
78.7    
78.9    
79.2    
79.4    
79.7    
79.9    
80.2    
80.5    
80.7    
81.0    
81.2    
81.5    
81.7    
82.0    
82.2    
82.5    
82.7    
83.0    
83.2    
83.5    
83.8    
84.0    
84.3    
84.5    
84.8    
85.0    
85.3    
85.5    
85.8    
86.0    
86.3    
86.5    
86.8    
87.1    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.8    
89.1    
89.3    
89.6    
89.8    
90.1    
90.4    
90.6    
90.9    
91.1    
91.4    
91.6    
91.9    
92.1    
92.4    
92.6    
92.9    
93.1    
93.4    
93.7    
93.9    
94.2    
94.4    
94.7    
94.9    
95.2    
95.4    
95.7    
95.9    
96.2    
96.4    
96.7    
97.0    
97.2    
97.5    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 37389, rend_intergenic: 32721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43993, rend_intergenic: 38692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68134, rend_intergenic: 61993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69420, rend_intergenic: 68822  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70529, rend_intergenic: 69470  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115668, rend_intergenic: 105519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 19169
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12379
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12228
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support