-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_6072824-6308228

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_47231-T1
Valid prediction for GeneMark_model.82549_t
Valid prediction for GeneMark_model.82530_t
Valid prediction for GeneMark_model.82573_t
Valid prediction for GeneMark_model.82588_t
Valid prediction for CodingQuarry_transcript_30467-T1
Valid prediction for snap_scaffold_20-snap.1379-T1
Valid prediction for GeneMark_model.82560_t
Valid prediction for GeneMark_model.82550_t
Valid prediction for GeneMark_model.82587_t
Valid prediction for GlimmerHMM_glimmerT_47226-T1
Valid prediction for GlimmerHMM_glimmerT_47249-T1
Valid prediction for GlimmerHMM_glimmerT_47242-T1
Valid prediction for Augustus_model.g31499.t1
Valid prediction for Augustus_model.g31498.t1
Valid prediction for snap_scaffold_20-snap.1372-T1
Valid prediction for GeneMark_model.82557_t
Valid prediction for GeneMark_model.82569_t
Valid prediction for snap_scaffold_20-snap.1387-T1
Valid prediction for Augustus_model.g31501.t1
Valid prediction for GlimmerHMM_glimmerT_47259-T1
Valid prediction for GeneMark_model.82583_t
Valid prediction for GlimmerHMM_glimmerT_47256-T1
Valid prediction for GeneMark_model.82559_t
Valid prediction for GlimmerHMM_glimmerT_47247-T1
Valid prediction for snap_scaffold_20-snap.1374-T1
Valid prediction for GeneMark_model.82542_t
Valid prediction for GeneMark_model.82581_t
Valid prediction for GeneMark_model.82532_t
Valid prediction for GeneMark_model.82547_t
Valid prediction for GeneMark_model.82544_t
Valid prediction for HiQ_model.g31510.t1
Valid prediction for snap_scaffold_20-snap.1365-T1
Valid prediction for Augustus_model.g31512.t1
Valid prediction for snap_scaffold_20-snap.1370-T1
Valid prediction for snap_scaffold_20-snap.1354-T1
Valid prediction for GlimmerHMM_glimmerT_47245-T1
Valid prediction for GeneMark_model.82536_t
Valid prediction for GeneMark_model.82534_t
Valid prediction for GlimmerHMM_glimmerT_47235-T1
Valid prediction for GlimmerHMM_glimmerT_47255-T1
Valid prediction for GeneMark_model.82538_t
Valid prediction for GeneMark_model.82552_t
Valid prediction for snap_scaffold_20-snap.1360-T1
Valid prediction for GlimmerHMM_glimmerT_47240-T1
Valid prediction for GeneMark_model.82546_t
Valid prediction for CodingQuarry_transcript_30466-T1
Valid prediction for GlimmerHMM_glimmerT_47252-T1
Valid prediction for snap_scaffold_20-snap.1381-T1
Valid prediction for GeneMark_model.82537_t
Valid prediction for GeneMark_model.82563_t
Valid prediction for pasa_asmbl_26303.p1
Valid prediction for snap_scaffold_20-snap.1357-T1
Valid prediction for GeneMark_model.82576_t
Valid prediction for GeneMark_model.82564_t
Valid prediction for GeneMark_model.82575_t
Valid prediction for GeneMark_model.82571_t
Valid prediction for snap_scaffold_20-snap.1371-T1
Couldn't classify 108970, 109000
Sorry, prediction pasa_asmbl_25808.p1 fails validation.
(TTG)	 CC	108970-109000	GT	TGG
(GCC)	 AG	109118-109189	GT	GAG
(AGT)	 AG	109290-109331	GT	CAG
(GAG)	 AG	109648-109734	GT	TGG
(AGC)	 AG	109991-110050	GC	ATG
(ACG)	 AG	110166-110698	GG	GAG
-recovered pasa_asmbl_25808.p1, terminal, 110166, 110698
-recovered pasa_asmbl_25808.p1, internal, 109118, 109189
-recovered pasa_asmbl_25808.p1, internal, 109290, 109331
-recovered pasa_asmbl_25808.p1, internal, 109648, 109734
-recovered pasa_asmbl_25808.p1, internal, 109991, 110050
Valid prediction for GlimmerHMM_glimmerT_47233-T1
Valid prediction for GeneMark_model.82579_t
Valid prediction for snap_scaffold_20-snap.1363-T1
Valid prediction for snap_scaffold_20-snap.1386-T1
Valid prediction for snap_scaffold_20-snap.1391-T1
Valid prediction for GlimmerHMM_glimmerT_47229-T1
Valid prediction for GeneMark_model.82568_t
Valid prediction for Augustus_model.g31508.t1
Valid prediction for snap_scaffold_20-snap.1359-T1
Valid prediction for snap_scaffold_20-snap.1353-T1
Valid prediction for GlimmerHMM_glimmerT_47239-T1
Valid prediction for GlimmerHMM_glimmerT_47225-T1
Valid prediction for snap_scaffold_20-snap.1368-T1
Valid prediction for GlimmerHMM_glimmerT_47243-T1
Valid prediction for GlimmerHMM_glimmerT_47246-T1
Valid prediction for GeneMark_model.82578_t
Valid prediction for GeneMark_model.82554_t
Valid prediction for Augustus_model.g31509.t1
Valid prediction for snap_scaffold_20-snap.1383-T1
Valid prediction for snap_scaffold_20-snap.1364-T1
Valid prediction for GeneMark_model.82540_t
Valid prediction for snap_scaffold_20-snap.1380-T1
Valid prediction for GlimmerHMM_glimmerT_47236-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.82582_t
Valid prediction for GlimmerHMM_glimmerT_47228-T1
Valid prediction for GeneMark_model.82529_t
Valid prediction for GlimmerHMM_glimmerT_47261-T1
Couldn't classify 13384, 15021
Couldn't classify 19391, 19492
Sorry, prediction pasa_asmbl_26751.p1 fails validation.
(AGA)	 CT	13384-15021	GT	AGG
(GGC)	 AG	16875-17075	GT	AGG
(ATC)	 AG	17287-17656	GT	CGG
(CCC)	 AG	17882-18132	GT	AGG
(TTA)	 AG	18607-18759	GT	GGG
(CTC)	 AG	19391-19492	AG	GTA
-recovered pasa_asmbl_26751.p1, internal, 16875, 17075
-recovered pasa_asmbl_26751.p1, internal, 17287, 17656
-recovered pasa_asmbl_26751.p1, internal, 17882, 18132
-recovered pasa_asmbl_26751.p1, internal, 18607, 18759
Valid prediction for GeneMark_model.82586_t
Valid prediction for pasa_asmbl_26750.p1
Valid prediction for GlimmerHMM_glimmerT_47253-T1
Valid prediction for GeneMark_model.82531_t
Valid prediction for Augustus_model.g31515.t1
Valid prediction for GlimmerHMM_glimmerT_47262-T1
Valid prediction for GeneMark_model.82561_t
Couldn't classify 99375, 99626
Sorry, prediction pasa_asmbl_26748.p1 fails validation.
(ATG)	 TG	98199-98246	GT	AGG
(CTC)	 AG	99375-99626	AT	AGA
-recovered pasa_asmbl_26748.p1, initial, 98199, 98246
Valid prediction for GeneMark_model.82533_t
Valid prediction for GeneMark_model.82548_t
Valid prediction for GeneMark_model.82551_t
Valid prediction for GeneMark_model.82555_t
Valid prediction for snap_scaffold_20-snap.1388-T1
Valid prediction for snap_scaffold_20-snap.1375-T1
Valid prediction for snap_scaffold_20-snap.1358-T1
Valid prediction for GeneMark_model.82541_t
Valid prediction for GlimmerHMM_glimmerT_47254-T1
Valid prediction for snap_scaffold_20-snap.1389-T1
Valid prediction for GlimmerHMM_glimmerT_47258-T1
Valid prediction for GeneMark_model.82577_t
Valid prediction for GlimmerHMM_glimmerT_47227-T1
Valid prediction for snap_scaffold_20-snap.1390-T1
Valid prediction for pasa_asmbl_26744.p1
Valid prediction for GeneMark_model.82535_t
Valid prediction for GeneMark_model.82553_t
Couldn't classify 169692, 169839
Sorry, prediction pasa_asmbl_26735.p1 fails validation.
(CCG)	 CC	169692-169839	GT	AGG
(ACA)	 AG	169944-170053	GT	AGG
(ATA)	 AG	170310-170499	GT	AGG
(ACG)	 AG	170825-170913	GT	ATG
(GTC)	 AG	171016-171086	GT	AGG
(CTG)	 AG	171655-171826	GT	TGG
(GTC)	 AG	172088-172222	GT	TGG
(TGC)	 AG	172364-172498	GT	AGG
(CTA)	 AG	173098-173349	GT	AGG
(GGC)	 AG	173602-173780	GT	AGG
(GGG)	 AG	175309-175414	AA	AGA
-recovered pasa_asmbl_26735.p1, terminal, 175309, 175414
-recovered pasa_asmbl_26735.p1, internal, 169944, 170053
-recovered pasa_asmbl_26735.p1, internal, 170310, 170499
-recovered pasa_asmbl_26735.p1, internal, 170825, 170913
-recovered pasa_asmbl_26735.p1, internal, 171016, 171086
-recovered pasa_asmbl_26735.p1, internal, 171655, 171826
-recovered pasa_asmbl_26735.p1, internal, 172088, 172222
-recovered pasa_asmbl_26735.p1, internal, 172364, 172498
-recovered pasa_asmbl_26735.p1, internal, 173098, 173349
-recovered pasa_asmbl_26735.p1, internal, 173602, 173780
Valid prediction for GeneMark_model.82570_t
Valid prediction for Augustus_model.g31507.t1
Valid prediction for snap_scaffold_20-snap.1356-T1
Valid prediction for GeneMark_model.82590_t
Valid prediction for snap_scaffold_20-snap.1369-T1
Valid prediction for GlimmerHMM_glimmerT_47241-T1
Valid prediction for GlimmerHMM_glimmerT_47232-T1
Valid prediction for snap_scaffold_20-snap.1361-T1
Valid prediction for GeneMark_model.82558_t
Valid prediction for GlimmerHMM_glimmerT_47234-T1
Valid prediction for snap_scaffold_20-snap.1373-T1
Valid prediction for Augustus_model.g31518.t1
Couldn't classify 178696, 178805
Couldn't classify 182323, 182435
Sorry, prediction pasa_asmbl_26733.p1 fails validation.
(TGT)	 CG	178696-178805	GT	AGG
(GGA)	 AG	180327-180498	GT	AGG
(CTG)	 AG	180688-180822	GT	AGG
(GTG)	 AG	181942-181981	GT	AGG
(AGT)	 AG	182323-182435	GT	AGG
-recovered pasa_asmbl_26733.p1, internal, 180327, 180498
-recovered pasa_asmbl_26733.p1, internal, 180688, 180822
-recovered pasa_asmbl_26733.p1, internal, 181942, 181981
-recovered pasa_asmbl_26733.p1, internal, 182323, 182435
Valid prediction for GeneMark_model.82543_t
Valid prediction for GeneMark_model.82574_t
Valid prediction for GeneMark_model.82539_t
Valid prediction for Augustus_model.g31500.t1
Valid prediction for GlimmerHMM_glimmerT_47257-T1
Valid prediction for snap_scaffold_20-snap.1392-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for HiQ_model.g31513.t1
Valid prediction for snap_scaffold_20-snap.1385-T1
Valid prediction for CodingQuarry_transcript_30468-T1
Valid prediction for GeneMark_model.82584_t
Valid prediction for GlimmerHMM_glimmerT_47250-T1
Valid prediction for GlimmerHMM_glimmerT_47244-T1
Valid prediction for Augustus_model.g31504.t1
Valid prediction for GeneMark_model.82572_t
Valid prediction for GeneMark_model.82545_t
Valid prediction for GeneMark_model.82566_t
Valid prediction for GlimmerHMM_glimmerT_47238-T1
Valid prediction for snap_scaffold_20-snap.1382-T1
Valid prediction for GeneMark_model.82589_t
Valid prediction for Augustus_model.g31519.t1
Valid prediction for GeneMark_model.82556_t
Valid prediction for snap_scaffold_20-snap.1378-T1
Valid prediction for Augustus_model.g31503.t1
Valid prediction for Augustus_model.g31516.t1
Couldn't classify 167341, 167490
Couldn't classify 169539, 169607
Sorry, prediction pasa_asmbl_27215.p1 fails validation.
(GCC)	 AG	167341-167490	GT	GGG
(ATT)	 AG	167851-167982	GT	CGG
(GTC)	 AG	169001-169129	GT	AGG
(GGT)	 AG	169539-169607	AG	GGA
-recovered pasa_asmbl_27215.p1, internal, 167341, 167490
-recovered pasa_asmbl_27215.p1, internal, 167851, 167982
-recovered pasa_asmbl_27215.p1, internal, 169001, 169129
Valid prediction for Augustus_model.g31506.t1
Valid prediction for CodingQuarry_transcript_30469-T1
Valid prediction for Augustus_model.g31514.t1
Valid prediction for Augustus_model.g31517.t1
Valid prediction for GlimmerHMM_glimmerT_47248-T1
Valid prediction for GeneMark_model.82585_t
Valid prediction for Augustus_model.g31511.t1
Valid prediction for GlimmerHMM_glimmerT_47230-T1
Couldn't classify 117682, 117696
Couldn't classify 118669, 118698
Sorry, prediction pasa_asmbl_26743.p1 fails validation.
(CTC)	 TC	117682-117696	GT	AGG
(GTG)	 AG	117925-118068	GT	AGG
(GGC)	 AG	118235-118392	GT	AGG
(GTG)	 AG	118516-118564	GT	AGG
(GTT)	 AG	118669-118698	GG	TGG
-recovered pasa_asmbl_26743.p1, internal, 117925, 118068
-recovered pasa_asmbl_26743.p1, internal, 118235, 118392
-recovered pasa_asmbl_26743.p1, internal, 118516, 118564
Couldn't classify 119025, 119075
Couldn't classify 119918, 120001
Sorry, prediction pasa_asmbl_26741.p1 fails validation.
(ACC)	 GC	119025-119075	GT	AGG
(CTG)	 AG	119263-119390	GT	CGG
(GCT)	 AG	119592-119703	GT	GGG
(CTG)	 AG	119918-120001	AA	ATA
-recovered pasa_asmbl_26741.p1, internal, 119263, 119390
-recovered pasa_asmbl_26741.p1, internal, 119592, 119703
Valid prediction for snap_scaffold_20-snap.1355-T1
Valid prediction for GlimmerHMM_glimmerT_47251-T1
Valid prediction for GeneMark_model.82567_t
Valid prediction for GlimmerHMM_glimmerT_47260-T1
Valid prediction for snap_scaffold_20-snap.1384-T1
Valid prediction for snap_scaffold_20-snap.1366-T1
Valid prediction for Augustus_model.g31502.t1
Valid prediction for snap_scaffold_20-snap.1376-T1
Valid prediction for GeneMark_model.82580_t
Valid prediction for Augustus_model.g31505.t1
Valid prediction for snap_scaffold_20-snap.1367-T1
Couldn't classify 22216, 22557
Sorry, prediction pasa_asmbl_27260.p1 fails validation.
(TCT)	 CC	22216-22557	CC	CGC
Valid prediction for GeneMark_model.82562_t
Valid prediction for GlimmerHMM_glimmerT_47237-T1
Valid prediction for snap_scaffold_20-snap.1377-T1
Valid prediction for snap_scaffold_20-snap.1362-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22747, rend_intergenic: 19998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25097, rend_intergenic: 23329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51872, rend_intergenic: 26792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70030, rend_intergenic: 59088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74405, rend_intergenic: 70626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94857, rend_intergenic: 93197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100597, rend_intergenic: 96021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159045, rend_intergenic: 144456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174662, rend_intergenic: 166137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182546, rend_intergenic: 174733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194956, rend_intergenic: 190172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200179, rend_intergenic: 196540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223362, rend_intergenic: 213816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 235405
-exon list size: 875


building trellis

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44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.7    
99.8    
99.9    
-found 42 predictions from path traversal
Error with prediction: snap lend_intergenic: 22747, rend_intergenic: 19998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25097, rend_intergenic: 23329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51872, rend_intergenic: 26792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70030, rend_intergenic: 59088  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74405, rend_intergenic: 70626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94857, rend_intergenic: 93197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100597, rend_intergenic: 96021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159045, rend_intergenic: 144456  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174662, rend_intergenic: 166137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182546, rend_intergenic: 174733  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 194956, rend_intergenic: 190172  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200179, rend_intergenic: 196540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223362, rend_intergenic: 213816  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support