-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_5744832-5925925

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g31465.t1
Valid prediction for GeneMark_model.82451_t
Valid prediction for snap_scaffold_20-snap.1314-T1
Valid prediction for GlimmerHMM_glimmerT_47191-T1
Valid prediction for GeneMark_model.82442_t
Couldn't classify 139155, 139731
Sorry, prediction pasa_asmbl_25792.p1 fails validation.
(CCT)	 CT	139155-139731	GT	AGG
(AAC)	 AG	139831-139917	GT	TGG
(TTC)	 AG	140080-140480	CT	AGC
-recovered pasa_asmbl_25792.p1, terminal, 140080, 140480
-recovered pasa_asmbl_25792.p1, internal, 139831, 139917
Valid prediction for GeneMark_model.82440_t
Valid prediction for snap_scaffold_20-snap.1290-T1
Valid prediction for snap_scaffold_20-snap.1302-T1
Valid prediction for snap_scaffold_20-snap.1281-T1
Valid prediction for GeneMark_model.82443_t
Valid prediction for GeneMark_model.82429_t
Valid prediction for GeneMark_model.82462_t
Valid prediction for HiQ_model.g31469.t1
Valid prediction for snap_scaffold_20-snap.1304-T1
Valid prediction for pasa_asmbl_25789.p1
Valid prediction for Augustus_model.g31480.t1
Valid prediction for snap_scaffold_20-snap.1301-T1
Valid prediction for GlimmerHMM_glimmerT_47182-T1
Valid prediction for snap_scaffold_20-snap.1278-T1
Valid prediction for GeneMark_model.82432_t
Valid prediction for GlimmerHMM_glimmerT_47187-T1
Valid prediction for GeneMark_model.82436_t
Valid prediction for Augustus_model.g31477.t1
Valid prediction for GlimmerHMM_glimmerT_47178-T1
Valid prediction for snap_scaffold_20-snap.1288-T1
Valid prediction for Augustus_model.g31461.t1
Valid prediction for snap_scaffold_20-snap.1308-T1
Couldn't classify 162197, 162236
Sorry, prediction pasa_asmbl_25794.p1 fails validation.
(ATG)	 TA	156058-156266	GT	AGG
(GAG)	 AG	156652-156823	GT	AGG
(GCG)	 AG	156921-157051	GT	GAG
(TTT)	 AG	157551-157669	GT	AGG
(GTG)	 AG	158322-158481	GT	AAG
(ACT)	 AG	158649-158793	GT	GGG
(GGT)	 AG	159187-159261	GT	ACG
(TGG)	 AG	159528-159607	GT	AGG
(AAG)	 AG	160174-160286	GT	AGG
(AGA)	 AG	160521-160582	GT	AGG
(ACT)	 AG	160828-160958	GT	AAG
(GTT)	 AG	161186-161273	GT	AGG
(GGC)	 AG	161404-161518	GT	AGG
(ACA)	 AG	161752-161867	GT	AGG
(AAT)	 AG	162038-162093	GT	AGG
(TCA)	 AG	162197-162236	GT	TGG
-recovered pasa_asmbl_25794.p1, initial, 156058, 156266
add_exon() Sorry, pasa_asmbl_25794.p1 156921-157051-terminal-2 is invalid.
-recovered pasa_asmbl_25794.p1, terminal, 156921, 157051
-recovered pasa_asmbl_25794.p1, internal, 156652, 156823
-recovered pasa_asmbl_25794.p1, internal, 156921, 157051
-recovered pasa_asmbl_25794.p1, internal, 157551, 157669
-recovered pasa_asmbl_25794.p1, internal, 158322, 158481
-recovered pasa_asmbl_25794.p1, internal, 158649, 158793
-recovered pasa_asmbl_25794.p1, internal, 159187, 159261
-recovered pasa_asmbl_25794.p1, internal, 159528, 159607
-recovered pasa_asmbl_25794.p1, internal, 160174, 160286
-recovered pasa_asmbl_25794.p1, internal, 160521, 160582
-recovered pasa_asmbl_25794.p1, internal, 160828, 160958
-recovered pasa_asmbl_25794.p1, internal, 161186, 161273
-recovered pasa_asmbl_25794.p1, internal, 161404, 161518
-recovered pasa_asmbl_25794.p1, internal, 161752, 161867
-recovered pasa_asmbl_25794.p1, internal, 162038, 162093
-recovered pasa_asmbl_25794.p1, internal, 162197, 162236
Valid prediction for snap_scaffold_20-snap.1305-T1
Valid prediction for Augustus_model.g31476.t1
Valid prediction for GeneMark_model.82425_t
Valid prediction for GlimmerHMM_glimmerT_47200-T1
Valid prediction for GlimmerHMM_glimmerT_47180-T1
Valid prediction for GeneMark_model.82445_t
Valid prediction for GeneMark_model.82437_t
Valid prediction for GeneMark_model.82435_t
Valid prediction for CodingQuarry_transcript_30452-T1
Valid prediction for snap_scaffold_20-snap.1285-T1
Couldn't classify 136554, 136883
Sorry, prediction pasa_asmbl_25791.p1 fails validation.
(AAT)	 CC	136554-136883	GG	GGG
Valid prediction for GlimmerHMM_glimmerT_47174-T1
Couldn't classify 119686, 119741
Sorry, prediction pasa_asmbl_25788.p1 fails validation.
(GTA)	 CA	119686-119741	GT	AGG
(TAT)	 AG	120430-120592	GT	AGG
(TGC)	 AG	121009-121190	GT	CGG
(CTT)	 AG	121834-122033	GT	AGG
(CCG)	 AG	122140-122355	GT	GGG
(GCT)	 AG	123095-123260	GT	AGG
(GTC)	 AG	123788-123968	GT	CGG
(GAA)	 AG	124463-124615	GA	GAG
-recovered pasa_asmbl_25788.p1, terminal, 124463, 124615
-recovered pasa_asmbl_25788.p1, internal, 120430, 120592
-recovered pasa_asmbl_25788.p1, internal, 121009, 121190
-recovered pasa_asmbl_25788.p1, internal, 121834, 122033
-recovered pasa_asmbl_25788.p1, internal, 122140, 122355
-recovered pasa_asmbl_25788.p1, internal, 123095, 123260
-recovered pasa_asmbl_25788.p1, internal, 123788, 123968
Valid prediction for GlimmerHMM_glimmerT_47181-T1
Valid prediction for snap_scaffold_20-snap.1311-T1
Valid prediction for pasa_asmbl_25784.p1
Valid prediction for GlimmerHMM_glimmerT_47199-T1
Valid prediction for snap_scaffold_20-snap.1287-T1
Valid prediction for GlimmerHMM_glimmerT_47194-T1
Valid prediction for GlimmerHMM_glimmerT_47193-T1
Valid prediction for snap_scaffold_20-snap.1273-T1
Valid prediction for GeneMark_model.82453_t
Valid prediction for snap_scaffold_20-snap.1271-T1
Valid prediction for GeneMark_model.82465_t
Valid prediction for CodingQuarry_transcript_30459-T1
Valid prediction for Augustus_model.g31468.t1
Valid prediction for snap_scaffold_20-snap.1295-T1
Valid prediction for GlimmerHMM_glimmerT_47201-T1
Valid prediction for GeneMark_model.82459_t
Valid prediction for Augustus_model.g31466.t1
Valid prediction for GeneMark_model.82438_t
Valid prediction for snap_scaffold_20-snap.1293-T1
Valid prediction for GeneMark_model.82447_t
Valid prediction for GlimmerHMM_glimmerT_47197-T1
Valid prediction for GlimmerHMM_glimmerT_47195-T1
Valid prediction for Augustus_model.g31464.t1
Valid prediction for HiQ_model.g31483.t1
Valid prediction for Augustus_model.g31462.t1
Valid prediction for GeneMark_model.82430_t
Valid prediction for GlimmerHMM_glimmerT_47179-T1
Valid prediction for GlimmerHMM_glimmerT_47183-T1
Valid prediction for snap_scaffold_20-snap.1299-T1
Valid prediction for GeneMark_model.82427_t
Couldn't classify 98354, 98460
Sorry, prediction CodingQuarry_transcript_30454-T1 fails validation.
(ATG)	 TC	94990-95054	GT	AAG
(AGA)	 AG	95648-95744	GT	AGG
(AAC)	 AG	96011-96163	GT	AGG
(TTC)	 AG	96321-96467	GT	AGG
(GGA)	 AG	97344-97382	GT	AGG
(GCG)	 AG	97629-97742	GT	AGG
(TTC)	 AG	97853-98111	GT	CAG
(TAG)	 TG	98354-98460	GT	GGG
(GCT)	 AG	98581-98661	AA	AGA
-recovered CodingQuarry_transcript_30454-T1, initial, 94990, 95054
-recovered CodingQuarry_transcript_30454-T1, terminal, 98581, 98661
-recovered CodingQuarry_transcript_30454-T1, internal, 95648, 95744
-recovered CodingQuarry_transcript_30454-T1, internal, 96011, 96163
-recovered CodingQuarry_transcript_30454-T1, internal, 96321, 96467
-recovered CodingQuarry_transcript_30454-T1, internal, 97344, 97382
-recovered CodingQuarry_transcript_30454-T1, internal, 97629, 97742
-recovered CodingQuarry_transcript_30454-T1, internal, 97853, 98111
Valid prediction for GlimmerHMM_glimmerT_47185-T1
Valid prediction for GeneMark_model.82457_t
Valid prediction for Augustus_model.g31478.t1
Valid prediction for HiQ_model.g31471.t1
Valid prediction for snap_scaffold_20-snap.1275-T1
Valid prediction for snap_scaffold_20-snap.1307-T1
Valid prediction for Augustus_model.g31463.t1
Valid prediction for GeneMark_model.82434_t
Valid prediction for GlimmerHMM_glimmerT_47177-T1
Valid prediction for snap_scaffold_20-snap.1291-T1
Valid prediction for GlimmerHMM_glimmerT_47172-T1
Valid prediction for GeneMark_model.82464_t
Valid prediction for GeneMark_model.82460_t
Valid prediction for snap_scaffold_20-snap.1280-T1
Valid prediction for GeneMark_model.82448_t
Valid prediction for CodingQuarry_transcript_30453-T1
Valid prediction for snap_scaffold_20-snap.1284-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for pasa_asmbl_26698.p1
Valid prediction for CodingQuarry_transcript_30462-T1
Valid prediction for HiQ_model.g31473.t1
Valid prediction for GlimmerHMM_glimmerT_47188-T1
Valid prediction for snap_scaffold_20-snap.1316-T1
Valid prediction for snap_scaffold_20-snap.1277-T1
Valid prediction for pasa_asmbl_26710.p1
Valid prediction for GeneMark_model.82439_t
Valid prediction for snap_scaffold_20-snap.1286-T1
Valid prediction for GeneMark_model.82441_t
Valid prediction for snap_scaffold_20-snap.1298-T1
Valid prediction for snap_scaffold_20-snap.1294-T1
Valid prediction for snap_scaffold_20-snap.1282-T1
Valid prediction for GeneMark_model.82426_t
Couldn't classify 27526, 27684
Couldn't classify 28094, 28291
Sorry, prediction pasa_asmbl_26703.p1 fails validation.
(CAA)	 GG	27526-27684	GT	AGG
(GCG)	 AG	27824-27955	GT	AGG
(GAA)	 AG	28094-28291	AG	GAA
-recovered pasa_asmbl_26703.p1, internal, 27824, 27955
Valid prediction for GlimmerHMM_glimmerT_47190-T1
Valid prediction for snap_scaffold_20-snap.1312-T1
Valid prediction for GeneMark_model.82450_t
Valid prediction for GeneMark_model.82449_t
Valid prediction for snap_scaffold_20-snap.1283-T1
Valid prediction for GeneMark_model.82431_t
Valid prediction for GlimmerHMM_glimmerT_47186-T1
Valid prediction for GeneMark_model.82455_t
Valid prediction for GlimmerHMM_glimmerT_47196-T1
Valid prediction for GeneMark_model.82454_t
Valid prediction for snap_scaffold_20-snap.1270-T1
Valid prediction for snap_scaffold_20-snap.1303-T1
Valid prediction for Augustus_model.g31485.t1
Valid prediction for CodingQuarry_transcript_30455-T1
Valid prediction for GeneMark_model.82466_t
Valid prediction for GlimmerHMM_glimmerT_47192-T1
Valid prediction for Augustus_model.g31467.t1
Valid prediction for snap_scaffold_20-snap.1289-T1
Valid prediction for GlimmerHMM_glimmerT_47189-T1
Valid prediction for GeneMark_model.82433_t
Valid prediction for snap_scaffold_20-snap.1309-T1
Valid prediction for GeneMark_model.82461_t
Valid prediction for GlimmerHMM_glimmerT_47198-T1
Valid prediction for snap_scaffold_20-snap.1276-T1
Valid prediction for snap_scaffold_20-snap.1306-T1
Valid prediction for snap_scaffold_20-snap.1310-T1
Valid prediction for GlimmerHMM_glimmerT_47202-T1
Valid prediction for pasa_asmbl_26701.p1
Valid prediction for GlimmerHMM_glimmerT_47175-T1
Valid prediction for Augustus_model.g31475.t1
Valid prediction for HiQ_model.g31474.t1
Couldn't classify 92972, 93073
Sorry, prediction pasa_asmbl_26696.p1 fails validation.
(ATG)	 AG	91004-91121	GT	ATG
(TTT)	 AG	91249-91345	GT	AGG
(GGC)	 AG	91559-91614	GT	AGG
(ATG)	 AG	91822-91951	GT	AAG
(AAG)	 AG	92191-92233	GT	AGG
(TCC)	 AG	92421-92519	GT	GGG
(GTG)	 AG	92768-92848	GT	GAG
(ACT)	 AG	92972-93073	CA	GCC
-recovered pasa_asmbl_26696.p1, initial, 91004, 91121
add_exon() Sorry, pasa_asmbl_26696.p1 91822-91951-initial-1 is invalid.
-recovered pasa_asmbl_26696.p1, initial, 91822, 91951
-recovered pasa_asmbl_26696.p1, internal, 91004, 91121
-recovered pasa_asmbl_26696.p1, internal, 91249, 91345
-recovered pasa_asmbl_26696.p1, internal, 91559, 91614
-recovered pasa_asmbl_26696.p1, internal, 91822, 91951
-recovered pasa_asmbl_26696.p1, internal, 92191, 92233
-recovered pasa_asmbl_26696.p1, internal, 92421, 92519
-recovered pasa_asmbl_26696.p1, internal, 92768, 92848
Valid prediction for Augustus_model.g31460.t1
Valid prediction for Augustus_model.g31481.t1
Valid prediction for GeneMark_model.82446_t
Valid prediction for snap_scaffold_20-snap.1296-T1
Valid prediction for snap_scaffold_20-snap.1297-T1
Valid prediction for snap_scaffold_20-snap.1300-T1
Valid prediction for snap_scaffold_20-snap.1272-T1
Valid prediction for snap_scaffold_20-snap.1279-T1
Valid prediction for Augustus_model.g31484.t1
Couldn't classify 8787, 8976
Sorry, prediction pasa_asmbl_26705.p1 fails validation.
(GAC)	 CA	8787-8976	GT	CGG
(ACC)	 AG	9548-9631	GT	AGG
(GGG)	 AG	10781-10857	GT	AGG
(GTG)	 AG	11022-11085	GT	AAG
(TCG)	 AG	11326-11525	AG	AAA
-recovered pasa_asmbl_26705.p1, terminal, 11326, 11525
-recovered pasa_asmbl_26705.p1, internal, 9548, 9631
-recovered pasa_asmbl_26705.p1, internal, 10781, 10857
-recovered pasa_asmbl_26705.p1, internal, 11022, 11085
Valid prediction for snap_scaffold_20-snap.1274-T1
Valid prediction for snap_scaffold_20-snap.1292-T1
Valid prediction for CodingQuarry_transcript_30456-T1
Valid prediction for GlimmerHMM_glimmerT_47184-T1
Valid prediction for GeneMark_model.82458_t
Valid prediction for GlimmerHMM_glimmerT_47173-T1
Valid prediction for GlimmerHMM_glimmerT_47171-T1
Valid prediction for Augustus_model.g31470.t1
Valid prediction for Augustus_model.g31479.t1
Valid prediction for CodingQuarry_transcript_30461-T1
Valid prediction for GeneMark_model.82428_t
Valid prediction for pasa_asmbl_26699.p1
Valid prediction for GeneMark_model.82452_t
Valid prediction for snap_scaffold_20-snap.1313-T1
Valid prediction for HiQ_model.g31482.t1
Valid prediction for GeneMark_model.82463_t
Valid prediction for HiQ_model.g31472.t1
Valid prediction for GeneMark_model.82444_t
Valid prediction for snap_scaffold_20-snap.1315-T1
Valid prediction for CodingQuarry_transcript_30458-T1
Valid prediction for GlimmerHMM_glimmerT_47176-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12049, rend_intergenic: 8085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17666, rend_intergenic: 12266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19487, rend_intergenic: 18431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22326, rend_intergenic: 19903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27062, rend_intergenic: 26057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30600, rend_intergenic: 28915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34591, rend_intergenic: 32895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42063, rend_intergenic: 39747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45844, rend_intergenic: 43570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65336, rend_intergenic: 60300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77673, rend_intergenic: 73895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112299, rend_intergenic: 111371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124615, rend_intergenic: 121835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162702, rend_intergenic: 156951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175010, rend_intergenic: 171438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181094
-exon list size: 670


building trellis

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42.3    
42.4    
42.6    
42.7    
42.9    
43.0    
43.2    
43.3    
43.5    
43.6    
43.8    
43.9    
44.0    
44.2    
44.3    
44.5    
44.6    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.8    
46.0    
46.1    
46.3    
46.4    
46.6    
46.7    
46.9    
47.0    
47.2    
47.3    
47.5    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.3    
49.4    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.6    
50.7    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.7    
52.8    
53.0    
53.1    
53.3    
53.4    
53.6    
53.7    
53.9    
54.0    
54.2    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.5    
55.7    
55.8    
56.0    
56.1    
56.2    
56.4    
56.5    
56.7    
56.8    
57.0    
57.1    
57.3    
57.4    
57.6    
57.7    
57.9    
58.0    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.4    
59.5    
59.7    
59.8    
60.0    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.4    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.1    
64.3    
64.4    
64.6    
64.7    
64.9    
65.0    
65.2    
65.3    
65.5    
65.6    
65.8    
65.9    
66.1    
66.2    
66.4    
66.5    
66.7    
66.8    
67.0    
67.1    
67.3    
67.4    
67.6    
67.7    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.1    
70.2    
70.4    
70.5    
70.7    
70.8    
71.0    
71.1    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.5    
73.7    
73.8    
74.0    
74.1    
74.3    
74.4    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.8    
76.9    
77.1    
77.2    
77.4    
77.5    
77.7    
77.8    
78.0    
78.1    
78.3    
78.4    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.8    
79.9    
80.1    
80.2    
80.4    
80.5    
80.7    
80.8    
81.0    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.1    
82.3    
82.4    
82.6    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.4    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.5    
86.6    
86.8    
86.9    
87.1    
87.2    
87.4    
87.5    
87.6    
87.8    
87.9    
88.1    
88.2    
88.4    
88.5    
88.7    
88.8    
89.0    
89.1    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.2    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.8    
92.0    
92.1    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.5    
93.6    
93.8    
93.9    
94.0    
94.2    
94.3    
94.5    
94.6    
94.8    
94.9    
95.1    
95.2    
95.4    
95.5    
95.7    
95.8    
96.0    
96.1    
96.3    
96.4    
96.6    
96.7    
96.9    
97.0    
97.2    
97.3    
97.5    
97.6    
97.8    
97.9    
98.1    
98.2    
98.4    
98.5    
98.7    
98.8    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 40 predictions from path traversal
Error with prediction: snap lend_intergenic: 12049, rend_intergenic: 8085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17666, rend_intergenic: 12266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19487, rend_intergenic: 18431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22326, rend_intergenic: 19903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27062, rend_intergenic: 26057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30600, rend_intergenic: 28915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34591, rend_intergenic: 32895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42063, rend_intergenic: 39747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45844, rend_intergenic: 43570  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65336, rend_intergenic: 60300  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77673, rend_intergenic: 73895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112299, rend_intergenic: 111371  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124615, rend_intergenic: 121835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 162702, rend_intergenic: 156951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175010, rend_intergenic: 171438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 27 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10074
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support