-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_5334085-5422944

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1192-T1
Valid prediction for GeneMark_model.82307_t
Valid prediction for GlimmerHMM_glimmerT_47107-T1
Valid prediction for GeneMark_model.82317_t
Valid prediction for snap_scaffold_20-snap.1195-T1
Valid prediction for GeneMark_model.82325_t
Valid prediction for GlimmerHMM_glimmerT_47105-T1
Valid prediction for snap_scaffold_20-snap.1178-T1
Valid prediction for snap_scaffold_20-snap.1168-T1
Valid prediction for snap_scaffold_20-snap.1184-T1
Valid prediction for Augustus_model.g31421.t1
Valid prediction for snap_scaffold_20-snap.1170-T1
Valid prediction for GeneMark_model.82334_t
Valid prediction for snap_scaffold_20-snap.1193-T1
Valid prediction for GeneMark_model.82310_t
Valid prediction for GeneMark_model.82324_t
Valid prediction for GeneMark_model.82332_t
Valid prediction for GeneMark_model.82331_t
Valid prediction for GeneMark_model.82328_t
Valid prediction for snap_scaffold_20-snap.1174-T1
Valid prediction for snap_scaffold_20-snap.1185-T1
Valid prediction for snap_scaffold_20-snap.1189-T1
Valid prediction for GeneMark_model.82312_t
Valid prediction for GlimmerHMM_glimmerT_47106-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_20-snap.1191-T1
Valid prediction for GlimmerHMM_glimmerT_47109-T1
Valid prediction for GlimmerHMM_glimmerT_47103-T1
Valid prediction for GeneMark_model.82314_t
Valid prediction for snap_scaffold_20-snap.1196-T1
Valid prediction for snap_scaffold_20-snap.1180-T1
Valid prediction for GeneMark_model.82326_t
Valid prediction for GeneMark_model.82322_t
Valid prediction for GeneMark_model.82316_t
Valid prediction for GeneMark_model.82320_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for HiQ_model.g31417.t1
Valid prediction for GeneMark_model.82318_t
Valid prediction for snap_scaffold_20-snap.1172-T1
Valid prediction for snap_scaffold_20-snap.1175-T1
Valid prediction for snap_scaffold_20-snap.1179-T1
Valid prediction for pasa_asmbl_26679.p1
Valid prediction for snap_scaffold_20-snap.1173-T1
Valid prediction for GlimmerHMM_glimmerT_47110-T1
Valid prediction for GlimmerHMM_glimmerT_47111-T1
Valid prediction for GeneMark_model.82329_t
Valid prediction for snap_scaffold_20-snap.1187-T1
Valid prediction for CodingQuarry_transcript_30444-T1
Valid prediction for snap_scaffold_20-snap.1188-T1
Valid prediction for GlimmerHMM_glimmerT_47108-T1
Valid prediction for GeneMark_model.82308_t
Valid prediction for GeneMark_model.82333_t
Valid prediction for snap_scaffold_20-snap.1181-T1
Valid prediction for Augustus_model.g31419.t1
Valid prediction for CodingQuarry_transcript_30443-T1
Valid prediction for GeneMark_model.82309_t
Valid prediction for snap_scaffold_20-snap.1182-T1
Valid prediction for GlimmerHMM_glimmerT_47102-T1
Valid prediction for GlimmerHMM_glimmerT_47104-T1
Valid prediction for snap_scaffold_20-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_47099-T1
Valid prediction for snap_scaffold_20-snap.1177-T1
Valid prediction for GeneMark_model.82319_t
Valid prediction for GeneMark_model.82315_t
Valid prediction for GeneMark_model.82323_t
Valid prediction for Augustus_model.g31416.t1
Valid prediction for GeneMark_model.82327_t
Valid prediction for GeneMark_model.82321_t
Valid prediction for GlimmerHMM_glimmerT_47100-T1
Valid prediction for snap_scaffold_20-snap.1183-T1
Valid prediction for snap_scaffold_20-snap.1169-T1
Valid prediction for snap_scaffold_20-snap.1186-T1
Valid prediction for GlimmerHMM_glimmerT_47112-T1
Valid prediction for snap_scaffold_20-snap.1176-T1
Valid prediction for GeneMark_model.82311_t
Valid prediction for GlimmerHMM_glimmerT_47101-T1
Valid prediction for GeneMark_model.82313_t
Valid prediction for Augustus_model.g31420.t1
Valid prediction for HiQ_model.g31418.t1
Valid prediction for pasa_asmbl_27253.p1
Valid prediction for snap_scaffold_20-snap.1190-T1
Valid prediction for snap_scaffold_20-snap.1167-T1
Valid prediction for snap_scaffold_20-snap.1194-T1
Valid prediction for GlimmerHMM_glimmerT_47113-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9990, rend_intergenic: 8006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32311, rend_intergenic: 28606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43275, rend_intergenic: 41521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44214, rend_intergenic: 44186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46099, rend_intergenic: 44897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54007, rend_intergenic: 51175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64948, rend_intergenic: 57729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67862, rend_intergenic: 66068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73945, rend_intergenic: 70671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78033, rend_intergenic: 76663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85609, rend_intergenic: 78904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 88860
-exon list size: 312


building trellis

0.3    
0.6    
1.0    
1.3    
1.6    
1.9    
2.2    
2.5    
2.9    
3.2    
3.5    
3.8    
4.1    
4.5    
4.8    
5.1    
5.4    
5.7    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
8.0    
8.3    
8.6    
8.9    
9.2    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.5    
11.8    
12.1    
12.4    
12.7    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
15.0    
15.3    
15.6    
15.9    
16.2    
16.6    
16.9    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.1    
20.4    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.6    
22.9    
23.2    
23.6    
23.9    
24.2    
24.5    
24.8    
25.2    
25.5    
25.8    
26.1    
26.4    
26.8    
27.1    
27.4    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.6    
29.9    
30.3    
30.6    
30.9    
31.2    
31.5    
31.8    
32.2    
32.5    
32.8    
33.1    
33.4    
33.8    
34.1    
34.4    
34.7    
35.0    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.3    
37.6    
37.9    
38.2    
38.5    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.8    
41.1    
41.4    
41.7    
42.0    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.3    
44.6    
44.9    
45.2    
45.5    
45.9    
46.2    
46.5    
46.8    
47.1    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.4    
49.7    
50.0    
50.3    
50.6    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.9    
53.2    
53.5    
53.8    
54.1    
54.5    
54.8    
55.1    
55.4    
55.7    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
58.0    
58.3    
58.6    
58.9    
59.2    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.5    
61.8    
62.1    
62.4    
62.7    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
65.0    
65.3    
65.6    
65.9    
66.2    
66.6    
66.9    
67.2    
67.5    
67.8    
68.2    
68.5    
68.8    
69.1    
69.4    
69.7    
70.1    
70.4    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.6    
72.9    
73.2    
73.6    
73.9    
74.2    
74.5    
74.8    
75.2    
75.5    
75.8    
76.1    
76.4    
76.8    
77.1    
77.4    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.6    
79.9    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.1    
83.4    
83.8    
84.1    
84.4    
84.7    
85.0    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.3    
87.6    
87.9    
88.2    
88.5    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.8    
91.1    
91.4    
91.7    
92.0    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.3    
94.6    
94.9    
95.2    
95.5    
95.9    
96.2    
96.5    
96.8    
97.1    
97.5    
97.8    
98.1    
98.4    
98.7    
99.0    
99.4    
99.7    
-found 18 predictions from path traversal
Error with prediction: snap lend_intergenic: 7023, rend_intergenic: 5016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9990, rend_intergenic: 8006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32311, rend_intergenic: 28606  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43275, rend_intergenic: 41521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44214, rend_intergenic: 44186  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46099, rend_intergenic: 44897  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54007, rend_intergenic: 51175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64948, rend_intergenic: 57729  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67862, rend_intergenic: 66068  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73945, rend_intergenic: 70671  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78033, rend_intergenic: 76663  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85609, rend_intergenic: 78904  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support