-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_4787187-4978547

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_47055-T1
Valid prediction for GeneMark_model.82152_t
Valid prediction for GeneMark_model.82164_t
Valid prediction for GeneMark_model.82193_t
Valid prediction for GlimmerHMM_glimmerT_47043-T1
Valid prediction for GeneMark_model.82162_t
Valid prediction for GeneMark_model.82173_t
Valid prediction for snap_scaffold_20-snap.1061-T1
Valid prediction for GeneMark_model.82175_t
Valid prediction for snap_scaffold_20-snap.1034-T1
Valid prediction for GlimmerHMM_glimmerT_47035-T1
Valid prediction for GeneMark_model.82184_t
Valid prediction for snap_scaffold_20-snap.1041-T1
Valid prediction for GeneMark_model.82160_t
Valid prediction for snap_scaffold_20-snap.1043-T1
Valid prediction for Augustus_model.g31373.t1
Valid prediction for GeneMark_model.82144_t
Valid prediction for snap_scaffold_20-snap.1063-T1
Valid prediction for Augustus_model.g31375.t1
Valid prediction for GeneMark_model.82180_t
Valid prediction for GlimmerHMM_glimmerT_47038-T1
Valid prediction for GlimmerHMM_glimmerT_47039-T1
Valid prediction for GeneMark_model.82158_t
Valid prediction for snap_scaffold_20-snap.1060-T1
Valid prediction for snap_scaffold_20-snap.1040-T1
Valid prediction for snap_scaffold_20-snap.1050-T1
Valid prediction for GeneMark_model.82166_t
Valid prediction for GeneMark_model.82169_t
Valid prediction for GeneMark_model.82194_t
Valid prediction for GeneMark_model.82182_t
Valid prediction for snap_scaffold_20-snap.1058-T1
Valid prediction for Augustus_model.g31378.t1
Valid prediction for GeneMark_model.82137_t
Valid prediction for snap_scaffold_20-snap.1071-T1
Valid prediction for GeneMark_model.82150_t
Valid prediction for snap_scaffold_20-snap.1055-T1
Valid prediction for GlimmerHMM_glimmerT_47033-T1
Valid prediction for snap_scaffold_20-snap.1048-T1
Valid prediction for snap_scaffold_20-snap.1078-T1
Valid prediction for snap_scaffold_20-snap.1080-T1
Valid prediction for GeneMark_model.82155_t
Valid prediction for GeneMark_model.82171_t
Valid prediction for GeneMark_model.82190_t
Valid prediction for snap_scaffold_20-snap.1047-T1
Valid prediction for snap_scaffold_20-snap.1066-T1
Valid prediction for GlimmerHMM_glimmerT_47050-T1
Valid prediction for GlimmerHMM_glimmerT_47053-T1
Valid prediction for GeneMark_model.82177_t
Valid prediction for snap_scaffold_20-snap.1067-T1
Valid prediction for GlimmerHMM_glimmerT_47046-T1
Valid prediction for snap_scaffold_20-snap.1079-T1
Valid prediction for GeneMark_model.82170_t
Valid prediction for Augustus_model.g31372.t1
Valid prediction for GeneMark_model.82157_t
Valid prediction for snap_scaffold_20-snap.1073-T1
Valid prediction for GeneMark_model.82139_t
Valid prediction for GeneMark_model.82151_t
Valid prediction for Augustus_model.g31386.t1
Valid prediction for snap_scaffold_20-snap.1053-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.82188_t
Valid prediction for GlimmerHMM_glimmerT_47036-T1
Valid prediction for GeneMark_model.82174_t
Valid prediction for GeneMark_model.82186_t
Valid prediction for GeneMark_model.82141_t
Valid prediction for GlimmerHMM_glimmerT_47041-T1
Valid prediction for GeneMark_model.82146_t
Valid prediction for snap_scaffold_20-snap.1075-T1
Valid prediction for Augustus_model.g31374.t1
Valid prediction for GeneMark_model.82147_t
Valid prediction for snap_scaffold_20-snap.1064-T1
Valid prediction for snap_scaffold_20-snap.1074-T1
Valid prediction for GeneMark_model.82168_t
Valid prediction for snap_scaffold_20-snap.1077-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_20-snap.1069-T1
Valid prediction for GeneMark_model.82161_t
Valid prediction for GeneMark_model.82191_t
Valid prediction for GeneMark_model.82192_t
Valid prediction for Augustus_model.g31379.t1
Valid prediction for snap_scaffold_20-snap.1059-T1
Valid prediction for GeneMark_model.82185_t
Valid prediction for GlimmerHMM_glimmerT_47034-T1
Valid prediction for snap_scaffold_20-snap.1037-T1
Valid prediction for GlimmerHMM_glimmerT_47032-T1
Valid prediction for GlimmerHMM_glimmerT_47042-T1
Valid prediction for Augustus_model.g31370.t1
Valid prediction for GeneMark_model.82154_t
Valid prediction for GeneMark_model.82143_t
Valid prediction for Augustus_model.g31376.t1
Valid prediction for GeneMark_model.82189_t
Valid prediction for GlimmerHMM_glimmerT_47054-T1
Valid prediction for GeneMark_model.82149_t
Valid prediction for GeneMark_model.82187_t
Valid prediction for GlimmerHMM_glimmerT_47048-T1
Valid prediction for snap_scaffold_20-snap.1057-T1
Valid prediction for GlimmerHMM_glimmerT_47040-T1
Valid prediction for snap_scaffold_20-snap.1065-T1
Valid prediction for GlimmerHMM_glimmerT_47047-T1
Valid prediction for GlimmerHMM_glimmerT_47049-T1
Valid prediction for Augustus_model.g31383.t1
Valid prediction for snap_scaffold_20-snap.1046-T1
Valid prediction for GeneMark_model.82156_t
Valid prediction for GeneMark_model.82145_t
Valid prediction for snap_scaffold_20-snap.1056-T1
Valid prediction for GeneMark_model.82140_t
Valid prediction for GeneMark_model.82136_t
Valid prediction for GlimmerHMM_glimmerT_47045-T1
Valid prediction for Augustus_model.g31377.t1
Valid prediction for GlimmerHMM_glimmerT_47044-T1
Valid prediction for Augustus_model.g31371.t1
Valid prediction for snap_scaffold_20-snap.1039-T1
Valid prediction for Augustus_model.g31381.t1
Valid prediction for GeneMark_model.82181_t
Valid prediction for Augustus_model.g31382.t1
Valid prediction for GeneMark_model.82176_t
Valid prediction for GeneMark_model.82172_t
Valid prediction for snap_scaffold_20-snap.1044-T1
Valid prediction for snap_scaffold_20-snap.1076-T1
Valid prediction for GlimmerHMM_glimmerT_47037-T1
Valid prediction for GeneMark_model.82165_t
Valid prediction for snap_scaffold_20-snap.1062-T1
Valid prediction for GeneMark_model.82148_t
Valid prediction for snap_scaffold_20-snap.1045-T1
Valid prediction for GeneMark_model.82163_t
Valid prediction for GeneMark_model.82138_t
Valid prediction for Augustus_model.g31380.t1
Valid prediction for snap_scaffold_20-snap.1042-T1
Valid prediction for GeneMark_model.82142_t
Valid prediction for GeneMark_model.82178_t
Valid prediction for GlimmerHMM_glimmerT_47031-T1
Valid prediction for snap_scaffold_20-snap.1036-T1
Valid prediction for snap_scaffold_20-snap.1072-T1
Valid prediction for GeneMark_model.82153_t
Valid prediction for Augustus_model.g31384.t1
Valid prediction for GlimmerHMM_glimmerT_47052-T1
Valid prediction for snap_scaffold_20-snap.1049-T1
Valid prediction for GeneMark_model.82183_t
Valid prediction for snap_scaffold_20-snap.1068-T1
Valid prediction for snap_scaffold_20-snap.1035-T1
Valid prediction for snap_scaffold_20-snap.1051-T1
Valid prediction for snap_scaffold_20-snap.1081-T1
Valid prediction for GeneMark_model.82159_t
Valid prediction for snap_scaffold_20-snap.1038-T1
Valid prediction for GeneMark_model.82135_t
Valid prediction for snap_scaffold_20-snap.1052-T1
Valid prediction for snap_scaffold_20-snap.1070-T1
Valid prediction for Augustus_model.g31385.t1
Valid prediction for GlimmerHMM_glimmerT_47051-T1
Valid prediction for GeneMark_model.82167_t
Valid prediction for GeneMark_model.82179_t
Valid prediction for snap_scaffold_20-snap.1054-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7960, rend_intergenic: 4561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34921, rend_intergenic: 34317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37990, rend_intergenic: 36262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47702, rend_intergenic: 44802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78760, rend_intergenic: 75757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82452, rend_intergenic: 79734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83105, rend_intergenic: 82905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110737, rend_intergenic: 107534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120643, rend_intergenic: 110971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129313, rend_intergenic: 122682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140454, rend_intergenic: 131441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140626, rend_intergenic: 140563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150971, rend_intergenic: 148320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163622, rend_intergenic: 156817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174741, rend_intergenic: 166632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 191361
-exon list size: 705


building trellis

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-found 44 predictions from path traversal
Error with prediction: snap lend_intergenic: 7960, rend_intergenic: 4561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34921, rend_intergenic: 34317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37990, rend_intergenic: 36262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47702, rend_intergenic: 44802  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78760, rend_intergenic: 75757  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82452, rend_intergenic: 79734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83105, rend_intergenic: 82905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110737, rend_intergenic: 107534  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120643, rend_intergenic: 110971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129313, rend_intergenic: 122682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140454, rend_intergenic: 131441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140626, rend_intergenic: 140563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150971, rend_intergenic: 148320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163622, rend_intergenic: 156817  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174741, rend_intergenic: 166632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support