-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_4619207-4789310

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.1018-T1
Valid prediction for snap_scaffold_20-snap.1004-T1
Valid prediction for GeneMark_model.82121_t
Valid prediction for GlimmerHMM_glimmerT_47022-T1
Valid prediction for snap_scaffold_20-snap.1020-T1
Valid prediction for GeneMark_model.82117_t
Valid prediction for snap_scaffold_20-snap.1005-T1
Valid prediction for snap_scaffold_20-snap.1013-T1
Valid prediction for GeneMark_model.82111_t
Valid prediction for GeneMark_model.82107_t
Valid prediction for GeneMark_model.82133_t
Valid prediction for Augustus_model.g31369.t1
Valid prediction for snap_scaffold_20-snap.1011-T1
Valid prediction for snap_scaffold_20-snap.1017-T1
Valid prediction for snap_scaffold_20-snap.1010-T1
Valid prediction for GlimmerHMM_glimmerT_47014-T1
Valid prediction for snap_scaffold_20-snap.1028-T1
Valid prediction for GlimmerHMM_glimmerT_47013-T1
Valid prediction for GeneMark_model.82105_t
Valid prediction for GeneMark_model.82120_t
Valid prediction for GeneMark_model.82129_t
Valid prediction for GlimmerHMM_glimmerT_47027-T1
Valid prediction for snap_scaffold_20-snap.1014-T1
Valid prediction for GlimmerHMM_glimmerT_47021-T1
Valid prediction for GlimmerHMM_glimmerT_47025-T1
Valid prediction for snap_scaffold_20-snap.1015-T1
Valid prediction for snap_scaffold_20-snap.1033-T1
Valid prediction for GeneMark_model.82115_t
Valid prediction for Augustus_model.g31361.t1
Valid prediction for snap_scaffold_20-snap.1026-T1
Valid prediction for GeneMark_model.82109_t
Valid prediction for GeneMark_model.82113_t
Valid prediction for GlimmerHMM_glimmerT_47030-T1
Valid prediction for snap_scaffold_20-snap.1024-T1
Valid prediction for Augustus_model.g31363.t1
Valid prediction for snap_scaffold_20-snap.1029-T1
Valid prediction for GlimmerHMM_glimmerT_47017-T1
Valid prediction for Augustus_model.g31362.t1
Valid prediction for snap_scaffold_20-snap.1008-T1
Valid prediction for GeneMark_model.82119_t
Valid prediction for GeneMark_model.82125_t
Valid prediction for GeneMark_model.82124_t
Valid prediction for GlimmerHMM_glimmerT_47016-T1
Valid prediction for Augustus_model.g31365.t1
Valid prediction for GlimmerHMM_glimmerT_47020-T1
Valid prediction for snap_scaffold_20-snap.1021-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_47015-T1
Valid prediction for GeneMark_model.82127_t
Valid prediction for GeneMark_model.82132_t
Valid prediction for snap_scaffold_20-snap.1006-T1
Valid prediction for GeneMark_model.82110_t
Valid prediction for GeneMark_model.82123_t
Valid prediction for snap_scaffold_20-snap.1030-T1
Valid prediction for Augustus_model.g31367.t1
Valid prediction for Augustus_model.g31368.t1
Valid prediction for Augustus_model.g31366.t1
Valid prediction for snap_scaffold_20-snap.1027-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.82126_t
Valid prediction for GeneMark_model.82108_t
Valid prediction for snap_scaffold_20-snap.1016-T1
Valid prediction for GeneMark_model.82122_t
Valid prediction for snap_scaffold_20-snap.1009-T1
Valid prediction for GeneMark_model.82128_t
Valid prediction for GlimmerHMM_glimmerT_47024-T1
Valid prediction for snap_scaffold_20-snap.1031-T1
Valid prediction for snap_scaffold_20-snap.1007-T1
Valid prediction for snap_scaffold_20-snap.1025-T1
Valid prediction for snap_scaffold_20-snap.1032-T1
Valid prediction for GlimmerHMM_glimmerT_47028-T1
Valid prediction for snap_scaffold_20-snap.1012-T1
Valid prediction for GeneMark_model.82103_t
Valid prediction for GlimmerHMM_glimmerT_47018-T1
Valid prediction for GeneMark_model.82104_t
Valid prediction for GeneMark_model.82114_t
Valid prediction for GeneMark_model.82116_t
Valid prediction for snap_scaffold_20-snap.1019-T1
Valid prediction for GeneMark_model.82112_t
Valid prediction for snap_scaffold_20-snap.1022-T1
Valid prediction for snap_scaffold_20-snap.1023-T1
Valid prediction for GeneMark_model.82106_t
Valid prediction for GeneMark_model.82102_t
Valid prediction for GeneMark_model.82118_t
Valid prediction for GlimmerHMM_glimmerT_47029-T1
Valid prediction for GlimmerHMM_glimmerT_47019-T1
Valid prediction for GlimmerHMM_glimmerT_47023-T1
Valid prediction for GeneMark_model.82131_t
Valid prediction for Augustus_model.g31360.t1
Valid prediction for GeneMark_model.82130_t
Valid prediction for Augustus_model.g31364.t1
Valid prediction for GlimmerHMM_glimmerT_47026-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 54351, rend_intergenic: 52094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68155, rend_intergenic: 66177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84629, rend_intergenic: 82690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87018, rend_intergenic: 85146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94338, rend_intergenic: 90721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157927, rend_intergenic: 147131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 170104
-exon list size: 373


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.5    
4.8    
5.1    
5.3    
5.6    
5.9    
6.1    
6.4    
6.7    
6.9    
7.2    
7.5    
7.7    
8.0    
8.3    
8.5    
8.8    
9.1    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
10.9    
11.2    
11.5    
11.7    
12.0    
12.3    
12.5    
12.8    
13.1    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
14.9    
15.2    
15.5    
15.7    
16.0    
16.3    
16.5    
16.8    
17.1    
17.3    
17.6    
17.9    
18.1    
18.4    
18.7    
18.9    
19.2    
19.5    
19.7    
20.0    
20.3    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.1    
22.4    
22.7    
22.9    
23.2    
23.5    
23.7    
24.0    
24.3    
24.5    
24.8    
25.1    
25.3    
25.6    
25.9    
26.1    
26.4    
26.7    
26.9    
27.2    
27.5    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.5    
36.8    
37.1    
37.3    
37.6    
37.9    
38.1    
38.4    
38.7    
38.9    
39.2    
39.5    
39.7    
40.0    
40.3    
40.5    
40.8    
41.1    
41.3    
41.6    
41.9    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.7    
44.0    
44.3    
44.5    
44.8    
45.1    
45.3    
45.6    
45.9    
46.1    
46.4    
46.7    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.3    
53.6    
53.9    
54.1    
54.4    
54.7    
54.9    
55.2    
55.5    
55.7    
56.0    
56.3    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.1    
58.4    
58.7    
58.9    
59.2    
59.5    
59.7    
60.0    
60.3    
60.5    
60.8    
61.1    
61.3    
61.6    
61.9    
62.1    
62.4    
62.7    
62.9    
63.2    
63.5    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.5    
72.8    
73.1    
73.3    
73.6    
73.9    
74.1    
74.4    
74.7    
74.9    
75.2    
75.5    
75.7    
76.0    
76.3    
76.5    
76.8    
77.1    
77.3    
77.6    
77.9    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.7    
80.0    
80.3    
80.5    
80.8    
81.1    
81.3    
81.6    
81.9    
82.1    
82.4    
82.7    
82.9    
83.2    
83.5    
83.7    
84.0    
84.3    
84.5    
84.8    
85.1    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
86.9    
87.2    
87.5    
87.7    
88.0    
88.3    
88.5    
88.8    
89.1    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
90.9    
91.2    
91.5    
91.7    
92.0    
92.3    
92.5    
92.8    
93.1    
93.3    
93.6    
93.9    
94.1    
94.4    
94.7    
94.9    
95.2    
95.5    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 54351, rend_intergenic: 52094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68155, rend_intergenic: 66177  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84629, rend_intergenic: 82690  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87018, rend_intergenic: 85146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94338, rend_intergenic: 90721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157927, rend_intergenic: 147131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 17880
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15865
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15819
-exon list size: 8


building trellis

10.0    
20.0    
30.0    
40.0    
50.0    
60.0    
70.0    
80.0    
90.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15326
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 15041
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14663
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 14506
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 3339 - 14506
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support