-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_20/scaffold_20_2067018-2255627 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_20-snap.486-T1 Valid prediction for GeneMark_model.81260_t Valid prediction for snap_scaffold_20-snap.478-T1 Valid prediction for GeneMark_model.81266_t Valid prediction for GlimmerHMM_glimmerT_46660-T1 Couldn't classify 64060, 64205 Couldn't classify 65445, 65471 Sorry, prediction pasa_asmbl_25630.p2 fails validation. (GGT) CA 64060-64205 GT AGG (AGG) AG 64712-64844 GT GGG (AAC) AG 65445-65471 AT CCA -recovered pasa_asmbl_25630.p2, internal, 64712, 64844 Valid prediction for snap_scaffold_20-snap.458-T1 Valid prediction for Augustus_model.g31165.t1 Valid prediction for snap_scaffold_20-snap.468-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_46664-T1 Valid prediction for GeneMark_model.81231_t Couldn't classify 41915, 42310 Couldn't classify 43573, 43717 Sorry, prediction pasa_asmbl_25626.p1 fails validation. (AAA) CG 41915-42310 GT AGG (GCC) AG 42823-42995 GT AGG (GAA) AG 43573-43717 TG GAT -recovered pasa_asmbl_25626.p1, internal, 42823, 42995 Valid prediction for GeneMark_model.81267_t Valid prediction for GeneMark_model.81237_t Couldn't classify 25476, 25549 Sorry, prediction pasa_asmbl_25624.p1 fails validation. (ATG) AC 23556-23759 GT ACG (GGA) AG 23934-24108 GT GGG (AAC) AG 24587-24672 GT CGG (GTG) AG 24844-25006 GT AGG (GTC) AG 25476-25549 AT TCA -recovered pasa_asmbl_25624.p1, initial, 23556, 23759 -recovered pasa_asmbl_25624.p1, internal, 23934, 24108 -recovered pasa_asmbl_25624.p1, internal, 24587, 24672 -recovered pasa_asmbl_25624.p1, internal, 24844, 25006 Valid prediction for GeneMark_model.81276_t Valid prediction for snap_scaffold_20-snap.490-T1 Valid prediction for CodingQuarry_transcript_30396-T1 Couldn't classify 7887, 7888 Sorry, prediction CodingQuarry_transcript_30394-T1 fails validation. (ATG) AC 5878-5931 GT AGG (GAC) AG 6036-6079 GT AGG (GCT) AG 6346-6388 GT AGG (GAA) AG 6494-6569 GT CGG (AGA) AG 6732-6842 GT AGG (GCA) AG 7135-7204 GT AAG (GTT) AG 7683-7738 GT CTG (AGT) AG 7887-7888 TG AGT -recovered CodingQuarry_transcript_30394-T1, initial, 5878, 5931 -recovered CodingQuarry_transcript_30394-T1, terminal, 6732, 6842 -recovered CodingQuarry_transcript_30394-T1, internal, 6036, 6079 -recovered CodingQuarry_transcript_30394-T1, internal, 6346, 6388 -recovered CodingQuarry_transcript_30394-T1, internal, 6494, 6569 -recovered CodingQuarry_transcript_30394-T1, internal, 6732, 6842 -recovered CodingQuarry_transcript_30394-T1, internal, 7135, 7204 -recovered CodingQuarry_transcript_30394-T1, internal, 7683, 7738 Valid prediction for GeneMark_model.81251_t Valid prediction for GlimmerHMM_glimmerT_46656-T1 Valid prediction for GeneMark_model.81274_t Valid prediction for snap_scaffold_20-snap.480-T1 Valid prediction for snap_scaffold_20-snap.467-T1 Valid prediction for snap_scaffold_20-snap.488-T1 Valid prediction for GlimmerHMM_glimmerT_46647-T1 Valid prediction for GlimmerHMM_glimmerT_46657-T1 Valid prediction for snap_scaffold_20-snap.475-T1 Valid prediction for GlimmerHMM_glimmerT_46655-T1 Valid prediction for Augustus_model.g31161.t1 Valid prediction for snap_scaffold_20-snap.455-T1 Valid prediction for GlimmerHMM_glimmerT_46651-T1 Valid prediction for GeneMark_model.81258_t Valid prediction for HiQ_model.g31158.t1 Valid prediction for GeneMark_model.81230_t Valid prediction for snap_scaffold_20-snap.457-T1 Valid prediction for snap_scaffold_20-snap.453-T1 Valid prediction for snap_scaffold_20-snap.462-T1 Couldn't classify 74790, 75013 Couldn't classify 75753, 75833 Sorry, prediction pasa_asmbl_25633.p1 fails validation. (GAG) AG 74790-75013 GT GGG (GGA) AG 75119-75314 GT AGG (ACT) AG 75753-75833 GG CTG -recovered pasa_asmbl_25633.p1, internal, 74790, 75013 -recovered pasa_asmbl_25633.p1, internal, 75119, 75314 Valid prediction for GeneMark_model.81235_t Valid prediction for GeneMark_model.81240_t Valid prediction for GeneMark_model.81239_t Valid prediction for GeneMark_model.81228_t Valid prediction for GeneMark_model.81255_t Valid prediction for GeneMark_model.81269_t Valid prediction for Augustus_model.g31166.t1 Valid prediction for GlimmerHMM_glimmerT_46661-T1 Valid prediction for snap_scaffold_20-snap.473-T1 Valid prediction for snap_scaffold_20-snap.465-T1 Valid prediction for snap_scaffold_20-snap.484-T1 Valid prediction for GeneMark_model.81233_t Valid prediction for GeneMark_model.81259_t Valid prediction for GeneMark_model.81253_t Valid prediction for snap_scaffold_20-snap.482-T1 Valid prediction for Augustus_model.g31155.t1 Valid prediction for snap_scaffold_20-snap.483-T1 Valid prediction for pasa_asmbl_25621.p1 Valid prediction for Augustus_model.g31157.t1 Valid prediction for GeneMark_model.81248_t Couldn't classify 69123, 69221 Sorry, prediction pasa_asmbl_25632.p1 fails validation. (TTC) GT 69123-69221 GT AGG (GCG) AG 69595-69767 GT AGG (GTG) AG 70067-70274 GT AGG (GTA) AG 70326-70862 GA AGG -recovered pasa_asmbl_25632.p1, terminal, 70326, 70862 -recovered pasa_asmbl_25632.p1, internal, 69595, 69767 -recovered pasa_asmbl_25632.p1, internal, 70067, 70274 Valid prediction for GlimmerHMM_glimmerT_46650-T1 Valid prediction for GeneMark_model.81246_t Valid prediction for GeneMark_model.81245_t Couldn't classify 169573, 169686 Couldn't classify 170002, 170187 Sorry, prediction pasa_asmbl_26379.p2 fails validation. (GAC) CA 169573-169686 GT TGG (ATA) AG 170002-170187 GA CCG Valid prediction for GlimmerHMM_glimmerT_46653-T1 Valid prediction for GeneMark_model.81256_t Valid prediction for GeneMark_model.81222_t Valid prediction for GeneMark_model.81226_t Valid prediction for Augustus_model.g31163.t1 Valid prediction for snap_scaffold_20-snap.476-T1 Valid prediction for GeneMark_model.81242_t Valid prediction for GlimmerHMM_glimmerT_46659-T1 Valid prediction for GlimmerHMM_glimmerT_46649-T1 Valid prediction for Augustus_model.g31162.t1 Valid prediction for snap_scaffold_20-snap.466-T1 Valid prediction for GeneMark_model.81224_t Valid prediction for Augustus_model.g31160.t1 Valid prediction for CodingQuarry_transcript_30393-T1 Valid prediction for Augustus_model.g31159.t1 Valid prediction for GeneMark_model.81271_t Valid prediction for GeneMark_model.81264_t Valid prediction for snap_scaffold_20-snap.470-T1 Couldn't classify 45861, 45918 Couldn't classify 47466, 47580 Sorry, prediction pasa_asmbl_25628.p1 fails validation. (GGG) CG 45861-45918 GT AGG (GTG) AG 46345-46513 GT GGG (CAG) AG 46667-46834 GT GGG (GAG) AG 46951-47259 GT AGG (ACA) AG 47466-47580 TT AGT -recovered pasa_asmbl_25628.p1, internal, 46345, 46513 -recovered pasa_asmbl_25628.p1, internal, 46667, 46834 -recovered pasa_asmbl_25628.p1, internal, 46951, 47259 Valid prediction for GeneMark_model.81262_t Valid prediction for GeneMark_model.81249_t Valid prediction for snap_scaffold_20-snap.460-T1 Valid prediction for snap_scaffold_20-snap.471-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.81243_t Valid prediction for GlimmerHMM_glimmerT_46648-T1 Valid prediction for GeneMark_model.81244_t Valid prediction for snap_scaffold_20-snap.456-T1 Valid prediction for Augustus_model.g31168.t1 Valid prediction for GlimmerHMM_glimmerT_46646-T1 Valid prediction for snap_scaffold_20-snap.492-T1 Valid prediction for snap_scaffold_20-snap.474-T1 Valid prediction for GeneMark_model.81250_t Valid prediction for GlimmerHMM_glimmerT_46666-T1 Valid prediction for GeneMark_model.81232_t Valid prediction for GlimmerHMM_glimmerT_46654-T1 Valid prediction for GeneMark_model.81268_t Valid prediction for GeneMark_model.81275_t Valid prediction for GeneMark_model.81247_t Valid prediction for GeneMark_model.81234_t Valid prediction for Augustus_model.g31164.t1 Valid prediction for GeneMark_model.81272_t Valid prediction for GlimmerHMM_glimmerT_46662-T1 Valid prediction for GeneMark_model.81257_t Valid prediction for snap_scaffold_20-snap.464-T1 Valid prediction for GeneMark_model.81254_t Valid prediction for snap_scaffold_20-snap.496-T1 Couldn't classify 26362, 26553 Couldn't classify 29977, 30042 Sorry, prediction pasa_asmbl_27245.p1 fails validation. (TCC) GC 26362-26553 GT GGG (ATC) AG 26696-26841 GT CTG (CCT) AG 27286-27451 GT CGG (GAG) AG 27566-27662 GT GGG (ACG) AG 27818-27937 GT TGG (GCC) AG 28385-28503 GT AGG (GAC) AG 28622-28753 GT TGG (GAC) AG 28941-29051 GT AGG (GTG) AG 29481-29594 GT TCG (GAC) AG 29977-30042 AC AGA -recovered pasa_asmbl_27245.p1, internal, 26696, 26841 -recovered pasa_asmbl_27245.p1, internal, 27286, 27451 -recovered pasa_asmbl_27245.p1, internal, 27566, 27662 -recovered pasa_asmbl_27245.p1, internal, 27818, 27937 -recovered pasa_asmbl_27245.p1, internal, 28385, 28503 -recovered pasa_asmbl_27245.p1, internal, 28622, 28753 -recovered pasa_asmbl_27245.p1, internal, 28941, 29051 -recovered pasa_asmbl_27245.p1, internal, 29481, 29594 Valid prediction for snap_scaffold_20-snap.494-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_20-snap.487-T1 Couldn't classify 175786, 175797 Couldn't classify 176986, 177108 Sorry, prediction pasa_asmbl_26557.p1 fails validation. (TCA) GC 175786-175797 GT AGG (GTG) AG 175971-176072 GT CAG (GTG) AG 176192-176326 GT CAG (CTG) AG 176424-176516 GT AGG (GTG) AG 176986-177108 CC TCC -recovered pasa_asmbl_26557.p1, internal, 175971, 176072 -recovered pasa_asmbl_26557.p1, internal, 176192, 176326 -recovered pasa_asmbl_26557.p1, internal, 176424, 176516 Valid prediction for GeneMark_model.81261_t Valid prediction for snap_scaffold_20-snap.459-T1 Valid prediction for GeneMark_model.81270_t Valid prediction for GeneMark_model.81265_t Valid prediction for snap_scaffold_20-snap.481-T1 Valid prediction for Augustus_model.g31156.t1 Valid prediction for GlimmerHMM_glimmerT_46663-T1 Couldn't classify 177217, 177328 Sorry, prediction pasa_asmbl_26556.p1 fails validation. (TCA) CC 177217-177328 GT AAG (AGT) AG 177761-178167 TT GAT -recovered pasa_asmbl_26556.p1, terminal, 177761, 178167 Valid prediction for snap_scaffold_20-snap.489-T1 Valid prediction for snap_scaffold_20-snap.493-T1 Valid prediction for GeneMark_model.81225_t Valid prediction for GeneMark_model.81273_t Couldn't classify 172933, 172981 Couldn't classify 175689, 175782 Sorry, prediction pasa_asmbl_26559.p1 fails validation. (CGA) GT 172933-172981 GT AGG (CTC) AG 173315-173422 GT AGG (GCT) AG 173603-173691 GT TGG (TGT) AG 173950-174065 GT AGG (GTT) AG 174389-174527 GT AGG (CTC) AG 174694-174788 GT CAG (GAA) AG 175115-175217 GT AGG (GTT) AG 175501-175583 GT AGG (GCT) AG 175689-175782 AG ATA -recovered pasa_asmbl_26559.p1, internal, 173315, 173422 -recovered pasa_asmbl_26559.p1, internal, 173603, 173691 -recovered pasa_asmbl_26559.p1, internal, 173950, 174065 -recovered pasa_asmbl_26559.p1, internal, 174389, 174527 -recovered pasa_asmbl_26559.p1, internal, 174694, 174788 -recovered pasa_asmbl_26559.p1, internal, 175115, 175217 -recovered pasa_asmbl_26559.p1, internal, 175501, 175583 Valid prediction for snap_scaffold_20-snap.497-T1 Valid prediction for GlimmerHMM_glimmerT_46658-T1 Valid prediction for GeneMark_model.81263_t Valid prediction for snap_scaffold_20-snap.472-T1 Valid prediction for GeneMark_model.81229_t Valid prediction for snap_scaffold_20-snap.463-T1 Valid prediction for CodingQuarry_transcript_30398-T1 Valid prediction for GlimmerHMM_glimmerT_46665-T1 Couldn't classify 45805, 45974 Couldn't classify 48407, 48529 Sorry, prediction pasa_asmbl_26560.p1 fails validation. (GGA) GG 45805-45974 GT AGG (CCC) AG 46122-46312 GT AGG (GAC) AG 46481-46547 GT AAG (GAC) AG 47117-47232 GT GGG (GTG) AG 47969-48018 GT TGG (GCC) AG 48407-48529 GG AGG -recovered pasa_asmbl_26560.p1, internal, 46122, 46312 -recovered pasa_asmbl_26560.p1, internal, 46481, 46547 -recovered pasa_asmbl_26560.p1, internal, 47117, 47232 -recovered pasa_asmbl_26560.p1, internal, 47969, 48018 Valid prediction for snap_scaffold_20-snap.477-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_20-snap.461-T1 Valid prediction for snap_scaffold_20-snap.485-T1 Valid prediction for GeneMark_model.81227_t Valid prediction for snap_scaffold_20-snap.479-T1 Valid prediction for GeneMark_model.81252_t Valid prediction for GeneMark_model.81236_t Valid prediction for Augustus_model.g31167.t1 Valid prediction for GlimmerHMM_glimmerT_46652-T1 Valid prediction for GeneMark_model.81238_t Valid prediction for snap_scaffold_20-snap.454-T1 Valid prediction for CodingQuarry_transcript_30397-T1 Valid prediction for GeneMark_model.81241_t Valid prediction for snap_scaffold_20-snap.469-T1 Couldn't classify 33944, 34057 Sorry, prediction pasa_asmbl_26562.p1 fails validation. (TCT) TC 33944-34057 GT AGG (AGG) AG 35387-35551 GT AGG (AAC) AG 35842-35988 GT AGG (GTT) AG 36196-36258 TC AGT -recovered pasa_asmbl_26562.p1, terminal, 36196, 36258 -recovered pasa_asmbl_26562.p1, internal, 35387, 35551 -recovered pasa_asmbl_26562.p1, internal, 35842, 35988 Valid prediction for snap_scaffold_20-snap.495-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15736, rend_intergenic: 2194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20651, rend_intergenic: 17285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25047, rend_intergenic: 23834 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28592, rend_intergenic: 25452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32242, rend_intergenic: 30404 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50086, rend_intergenic: 41714 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59555, rend_intergenic: 53438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70777, rend_intergenic: 59558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73464, rend_intergenic: 70788 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75202, rend_intergenic: 73535 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75992, rend_intergenic: 75373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83817, rend_intergenic: 76725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93738, rend_intergenic: 91346 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96244, rend_intergenic: 94129 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102855, rend_intergenic: 99771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108469, rend_intergenic: 104224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133729, rend_intergenic: 119360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143689, rend_intergenic: 133903 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146394, rend_intergenic: 143800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162917, rend_intergenic: 149645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 188610 -exon list size: 893 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 33 predictions from path traversal Error with prediction: snap lend_intergenic: 15736, rend_intergenic: 2194 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20651, rend_intergenic: 17285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25047, rend_intergenic: 23834 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28592, rend_intergenic: 25452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 32242, rend_intergenic: 30404 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50086, rend_intergenic: 41714 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59555, rend_intergenic: 53438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70777, rend_intergenic: 59558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73464, rend_intergenic: 70788 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75202, rend_intergenic: 73535 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75992, rend_intergenic: 75373 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 83817, rend_intergenic: 76725 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 93738, rend_intergenic: 91346 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96244, rend_intergenic: 94129 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102855, rend_intergenic: 99771 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108469, rend_intergenic: 104224 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133729, rend_intergenic: 119360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143689, rend_intergenic: 133903 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146394, rend_intergenic: 143800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162917, rend_intergenic: 149645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support -building DP trellis -building trellis in range 177572 - 188610 -exon list size: 25 building trellis 3.7 7.4 11.1 14.8 18.5 22.2 25.9 29.6 33.3 37.0 40.7 44.4 48.1 51.9 55.6 59.3 63.0 66.7 70.4 74.1 77.8 81.5 85.2 88.9 92.6 96.3 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support