-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_8512857-8691085

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_4276-T1
Valid prediction for snap_scaffold_2-snap.1731-T1
Valid prediction for GeneMark_model.6862_t
Valid prediction for GeneMark_model.6861_t
Valid prediction for GeneMark_model.6868_t
Valid prediction for GeneMark_model.6867_t
Valid prediction for GlimmerHMM_glimmerT_4278-T1
Valid prediction for GeneMark_model.6864_t
Valid prediction for GeneMark_model.6865_t
Valid prediction for GlimmerHMM_glimmerT_4284-T1
Valid prediction for GeneMark_model.6866_t
Valid prediction for snap_scaffold_2-snap.1730-T1
Valid prediction for GlimmerHMM_glimmerT_4280-T1
Valid prediction for GlimmerHMM_glimmerT_4287-T1
Valid prediction for Augustus_model.g2885.t1
Valid prediction for GeneMark_model.6863_t
Valid prediction for GlimmerHMM_glimmerT_4281-T1
Valid prediction for Augustus_model.g2881.t1
Valid prediction for GeneMark_model.6870_t
Valid prediction for snap_scaffold_2-snap.1727-T1
Valid prediction for GeneMark_model.6858_t
Valid prediction for snap_scaffold_2-snap.1726-T1
Valid prediction for snap_scaffold_2-snap.1725-T1
Valid prediction for pasa_asmbl_24676.p1
Valid prediction for GlimmerHMM_glimmerT_4279-T1
Valid prediction for GlimmerHMM_glimmerT_4282-T1
Valid prediction for Augustus_model.g2883.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g2884.t1
Valid prediction for snap_scaffold_2-snap.1728-T1
Valid prediction for GeneMark_model.6859_t
Valid prediction for GeneMark_model.6871_t
Valid prediction for GeneMark_model.6860_t
Valid prediction for GlimmerHMM_glimmerT_4277-T1
Valid prediction for GlimmerHMM_glimmerT_4290-T1
Valid prediction for GlimmerHMM_glimmerT_4289-T1
Valid prediction for GlimmerHMM_glimmerT_4286-T1
Valid prediction for GlimmerHMM_glimmerT_4291-T1
Valid prediction for GlimmerHMM_glimmerT_4283-T1
Valid prediction for GlimmerHMM_glimmerT_4288-T1
Valid prediction for snap_scaffold_2-snap.1724-T1
Valid prediction for Augustus_model.g2882.t1
Valid prediction for GlimmerHMM_glimmerT_4285-T1
Valid prediction for snap_scaffold_2-snap.1729-T1
Valid prediction for GeneMark_model.6869_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 178229
-exon list size: 134


building trellis

0.7    
1.5    
2.2    
2.9    
3.7    
4.4    
5.1    
5.9    
6.6    
7.4    
8.1    
8.8    
9.6    
10.3    
11.0    
11.8    
12.5    
13.2    
14.0    
14.7    
15.4    
16.2    
16.9    
17.6    
18.4    
19.1    
19.9    
20.6    
21.3    
22.1    
22.8    
23.5    
24.3    
25.0    
25.7    
26.5    
27.2    
27.9    
28.7    
29.4    
30.1    
30.9    
31.6    
32.4    
33.1    
33.8    
34.6    
35.3    
36.0    
36.8    
37.5    
38.2    
39.0    
39.7    
40.4    
41.2    
41.9    
42.6    
43.4    
44.1    
44.9    
45.6    
46.3    
47.1    
47.8    
48.5    
49.3    
50.0    
50.7    
51.5    
52.2    
52.9    
53.7    
54.4    
55.1    
55.9    
56.6    
57.4    
58.1    
58.8    
59.6    
60.3    
61.0    
61.8    
62.5    
63.2    
64.0    
64.7    
65.4    
66.2    
66.9    
67.6    
68.4    
69.1    
69.9    
70.6    
71.3    
72.1    
72.8    
73.5    
74.3    
75.0    
75.7    
76.5    
77.2    
77.9    
78.7    
79.4    
80.1    
80.9    
81.6    
82.4    
83.1    
83.8    
84.6    
85.3    
86.0    
86.8    
87.5    
88.2    
89.0    
89.7    
90.4    
91.2    
91.9    
92.6    
93.4    
94.1    
94.9    
95.6    
96.3    
97.1    
97.8    
98.5    
99.3    
-found 8 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 16424
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support
	-no exons in range 1 - 13112