-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_4531657-4726331

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.6162_t
Valid prediction for GeneMark_model.6164_t
Valid prediction for GlimmerHMM_glimmerT_3790-T1
Valid prediction for pasa_asmbl_24389.p1
Valid prediction for GlimmerHMM_glimmerT_3777-T1
Valid prediction for snap_scaffold_2-snap.1049-T1
Valid prediction for GeneMark_model.6175_t
Couldn't classify 65024, 65114
Sorry, prediction pasa_asmbl_24390.p2 fails validation.
(GTA)	 CA	65024-65114	GT	GGG
(AGG)	 AG	65349-65419	GT	AGG
(GTC)	 AG	65588-65690	GT	TGG
(AGA)	 AG	65937-66163	CC	GAC
-recovered pasa_asmbl_24390.p2, terminal, 65937, 66163
-recovered pasa_asmbl_24390.p2, internal, 65349, 65419
-recovered pasa_asmbl_24390.p2, internal, 65588, 65690
Valid prediction for GeneMark_model.6154_t
Valid prediction for GeneMark_model.6182_t
Valid prediction for GlimmerHMM_glimmerT_3775-T1
Valid prediction for GeneMark_model.6200_t
Valid prediction for Augustus_model.g2515.t1
Valid prediction for GlimmerHMM_glimmerT_3795-T1
Valid prediction for HiQ_model.g2525.t1
Couldn't classify 50314, 50521
Sorry, prediction pasa_asmbl_24382.p1 fails validation.
(CTG)	 GC	50314-50521	GT	GGG
(GGA)	 AG	50773-50846	GT	TGG
(GAT)	 AG	51015-51332	CC	AGC
-recovered pasa_asmbl_24382.p1, terminal, 51015, 51332
-recovered pasa_asmbl_24382.p1, internal, 50773, 50846
Valid prediction for snap_scaffold_2-snap.1068-T1
Valid prediction for GlimmerHMM_glimmerT_3779-T1
Valid prediction for Augustus_model.g2522.t1
Valid prediction for GlimmerHMM_glimmerT_3794-T1
Valid prediction for GlimmerHMM_glimmerT_3784-T1
Valid prediction for GlimmerHMM_glimmerT_3793-T1
Valid prediction for snap_scaffold_2-snap.1058-T1
Valid prediction for GeneMark_model.6174_t
Couldn't classify 92427, 92489
Couldn't classify 96738, 96808
Sorry, prediction pasa_asmbl_24393.p1 fails validation.
(CGC)	 GT	92427-92489	GT	AGG
(GTC)	 AG	93006-93068	GT	AGG
(GTC)	 AG	93503-93514	GT	TGG
(GAC)	 AG	94410-94544	GT	GGG
(TTC)	 AG	95478-95524	GT	GAG
(CGT)	 AG	95903-95964	GT	AGG
(CGT)	 AG	96738-96808	CT	AGC
-recovered pasa_asmbl_24393.p1, internal, 93006, 93068
-recovered pasa_asmbl_24393.p1, internal, 93503, 93514
-recovered pasa_asmbl_24393.p1, internal, 94410, 94544
-recovered pasa_asmbl_24393.p1, internal, 95478, 95524
-recovered pasa_asmbl_24393.p1, internal, 95903, 95964
Valid prediction for snap_scaffold_2-snap.1055-T1
Valid prediction for GeneMark_model.6167_t
Valid prediction for Augustus_model.g2518.t1
Valid prediction for GeneMark_model.6186_t
Valid prediction for CodingQuarry_transcript_28479-T1
Valid prediction for pasa_asmbl_24396.p1
Valid prediction for GeneMark_model.6192_t
Valid prediction for GeneMark_model.6184_t
Valid prediction for Augustus_model.g2517.t1
Valid prediction for GeneMark_model.6168_t
Valid prediction for snap_scaffold_2-snap.1052-T1
Valid prediction for GeneMark_model.6156_t
Valid prediction for GeneMark_model.6158_t
Valid prediction for HiQ_model.g2514.t1
Valid prediction for snap_scaffold_2-snap.1043-T1
Valid prediction for snap_scaffold_2-snap.1053-T1
Valid prediction for GlimmerHMM_glimmerT_3781-T1
Valid prediction for GeneMark_model.6166_t
Couldn't classify 34314, 34625
Couldn't classify 41617, 41710
Sorry, prediction pasa_asmbl_24375.p1 fails validation.
(TCG)	 CC	34314-34625	GT	AGG
(TGC)	 AG	36931-37138	GT	CAG
(GTA)	 AG	37443-37559	GT	AGG
(GAC)	 AG	38104-38205	GT	TGG
(GCT)	 AG	38948-39103	GT	AGG
(GCA)	 AG	39459-39559	GT	ATG
(GAC)	 AG	40643-40900	GT	AGG
(CCG)	 AG	41202-41317	GT	AGG
(GGA)	 AG	41617-41710	AA	CCA
-recovered pasa_asmbl_24375.p1, internal, 36931, 37138
-recovered pasa_asmbl_24375.p1, internal, 37443, 37559
-recovered pasa_asmbl_24375.p1, internal, 38104, 38205
-recovered pasa_asmbl_24375.p1, internal, 38948, 39103
-recovered pasa_asmbl_24375.p1, internal, 39459, 39559
-recovered pasa_asmbl_24375.p1, internal, 40643, 40900
-recovered pasa_asmbl_24375.p1, internal, 41202, 41317
Valid prediction for GeneMark_model.6179_t
Valid prediction for GlimmerHMM_glimmerT_3796-T1
Valid prediction for snap_scaffold_2-snap.1066-T1
Valid prediction for GlimmerHMM_glimmerT_3791-T1
Valid prediction for snap_scaffold_2-snap.1047-T1
Valid prediction for GeneMark_model.6195_t
Valid prediction for GlimmerHMM_glimmerT_3786-T1
Valid prediction for Augustus_model.g2516.t1
Valid prediction for GlimmerHMM_glimmerT_3780-T1
Valid prediction for GlimmerHMM_glimmerT_3787-T1
Valid prediction for GlimmerHMM_glimmerT_3771-T1
Valid prediction for GeneMark_model.6160_t
Valid prediction for HiQ_model.g2512.t1
Valid prediction for GlimmerHMM_glimmerT_3774-T1
Valid prediction for GlimmerHMM_glimmerT_3769-T1
Valid prediction for snap_scaffold_2-snap.1035-T1
Valid prediction for GeneMark_model.6193_t
Valid prediction for snap_scaffold_2-snap.1064-T1
Valid prediction for snap_scaffold_2-snap.1051-T1
Valid prediction for CodingQuarry_transcript_28480-T1
Valid prediction for GeneMark_model.6207_t
Valid prediction for snap_scaffold_2-snap.1062-T1
Valid prediction for GeneMark_model.6189_t
Couldn't classify 41708, 41743
Sorry, prediction pasa_asmbl_24378.p2 fails validation.
(CCC)	 AC	41708-41743	GT	AGG
(GTG)	 AG	41987-42077	GT	AGG
(ACG)	 AG	43478-43625	GT	ATG
(TGA)	 AG	44721-44920	GT	CGG
(GTG)	 AG	45430-45533	GT	AGG
(GAA)	 AG	45945-46016	GT	AGG
(CTG)	 AG	46269-46553	AT	AGA
-recovered pasa_asmbl_24378.p2, terminal, 46269, 46553
-recovered pasa_asmbl_24378.p2, internal, 41987, 42077
-recovered pasa_asmbl_24378.p2, internal, 43478, 43625
-recovered pasa_asmbl_24378.p2, internal, 44721, 44920
-recovered pasa_asmbl_24378.p2, internal, 45430, 45533
-recovered pasa_asmbl_24378.p2, internal, 45945, 46016
Valid prediction for snap_scaffold_2-snap.1065-T1
Valid prediction for Augustus_model.g2511.t1
Valid prediction for snap_scaffold_2-snap.1060-T1
Valid prediction for Augustus_model.g2528.t1
Valid prediction for Augustus_model.g2520.t1
Valid prediction for GeneMark_model.6176_t
Valid prediction for snap_scaffold_2-snap.1044-T1
Couldn't classify 57787, 57805
Sorry, prediction pasa_asmbl_24387.p1 fails validation.
(TCC)	 TG	57787-57805	GT	AGG
(CCT)	 AG	57998-58068	GT	CGG
(GAC)	 AG	58290-58379	GT	AGG
(GTG)	 AG	58502-58598	GT	TGG
(ACG)	 AG	59898-59997	GT	TTG
(CGC)	 AG	60194-60267	GT	AGG
(ACA)	 AG	60468-60658	GG	GAG
-recovered pasa_asmbl_24387.p1, terminal, 60468, 60658
-recovered pasa_asmbl_24387.p1, internal, 57998, 58068
-recovered pasa_asmbl_24387.p1, internal, 58290, 58379
-recovered pasa_asmbl_24387.p1, internal, 58502, 58598
-recovered pasa_asmbl_24387.p1, internal, 59898, 59997
-recovered pasa_asmbl_24387.p1, internal, 60194, 60267
Valid prediction for snap_scaffold_2-snap.1056-T1
Valid prediction for snap_scaffold_2-snap.1037-T1
Valid prediction for GeneMark_model.6205_t
Valid prediction for Augustus_model.g2513.t1
Valid prediction for GeneMark_model.6170_t
Couldn't classify 98020, 98184
Sorry, prediction pasa_asmbl_24395.p1 fails validation.
(CAT)	 AG	98020-98184	GT	GGG
(GCG)	 AG	99582-99722	GT	AGG
(ACG)	 AG	99926-100078	GT	TGG
(GTG)	 AG	100467-100580	CA	AAC
-recovered pasa_asmbl_24395.p1, terminal, 100467, 100580
-recovered pasa_asmbl_24395.p1, internal, 98020, 98184
-recovered pasa_asmbl_24395.p1, internal, 99582, 99722
-recovered pasa_asmbl_24395.p1, internal, 99926, 100078
Valid prediction for Augustus_model.g2529.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.1040-T1
Valid prediction for GeneMark_model.6194_t
Valid prediction for snap_scaffold_2-snap.1059-T1
Valid prediction for GeneMark_model.6202_t
Valid prediction for GeneMark_model.6204_t
Valid prediction for snap_scaffold_2-snap.1031-T1
Valid prediction for GlimmerHMM_glimmerT_3783-T1
Valid prediction for Augustus_model.g2530.t1
Valid prediction for Augustus_model.g2519.t1
Valid prediction for snap_scaffold_2-snap.1054-T1
Valid prediction for GlimmerHMM_glimmerT_3782-T1
Valid prediction for GeneMark_model.6199_t
Couldn't classify 34025, 34060
Couldn't classify 37662, 37825
Sorry, prediction pasa_asmbl_23117.p1 fails validation.
(GAA)	 CT	34025-34060	GT	TGG
(GAT)	 AG	35260-35380	GT	GAG
(GTG)	 AG	36692-36889	GT	GAG
(TTA)	 AG	37401-37511	GT	AGG
(GTT)	 AG	37662-37825	CT	ACC
add_exon() Sorry, pasa_asmbl_23117.p1 35260-35380-terminal-3 is invalid.
-recovered pasa_asmbl_23117.p1, terminal, 35260, 35380
-recovered pasa_asmbl_23117.p1, internal, 35260, 35380
-recovered pasa_asmbl_23117.p1, internal, 36692, 36889
-recovered pasa_asmbl_23117.p1, internal, 37401, 37511
Valid prediction for GeneMark_model.6196_t
Valid prediction for snap_scaffold_2-snap.1063-T1
Valid prediction for GeneMark_model.6161_t
Couldn't classify 178086, 178191
Sorry, prediction pasa_asmbl_23109.p1 fails validation.
(AGC)	 TC	178086-178191	GT	CGG
(GGA)	 AG	178598-178767	GT	AGG
(CTT)	 AG	178978-179166	AT	AAA
-recovered pasa_asmbl_23109.p1, terminal, 178978, 179166
-recovered pasa_asmbl_23109.p1, internal, 178598, 178767
Valid prediction for GeneMark_model.6187_t
Valid prediction for CodingQuarry_transcript_28478-T1
Valid prediction for GlimmerHMM_glimmerT_3776-T1
Valid prediction for GeneMark_model.6163_t
Valid prediction for GeneMark_model.6159_t
Valid prediction for snap_scaffold_2-snap.1038-T1
Valid prediction for GeneMark_model.6178_t
Valid prediction for GlimmerHMM_glimmerT_3770-T1
Valid prediction for GeneMark_model.6206_t
Valid prediction for snap_scaffold_2-snap.1036-T1
Valid prediction for snap_scaffold_2-snap.1061-T1
Valid prediction for GlimmerHMM_glimmerT_3785-T1
Valid prediction for snap_scaffold_2-snap.1039-T1
Valid prediction for GeneMark_model.6203_t
Valid prediction for GeneMark_model.6157_t
Valid prediction for HiQ_model.g2509.t1
Valid prediction for GeneMark_model.6201_t
Valid prediction for GeneMark_model.6191_t
Valid prediction for Augustus_model.g2508.t1
Valid prediction for GlimmerHMM_glimmerT_3773-T1
Valid prediction for snap_scaffold_2-snap.1032-T1
Valid prediction for Augustus_model.g2524.t1
Valid prediction for snap_scaffold_2-snap.1034-T1
Valid prediction for Augustus_model.g2523.t1
Valid prediction for GlimmerHMM_glimmerT_3778-T1
Valid prediction for GeneMark_model.6185_t
Valid prediction for GeneMark_model.6181_t
Valid prediction for GeneMark_model.6173_t
Valid prediction for snap_scaffold_2-snap.1045-T1
Valid prediction for GeneMark_model.6165_t
Valid prediction for GeneMark_model.6208_t
Valid prediction for GeneMark_model.6155_t
Valid prediction for GlimmerHMM_glimmerT_3792-T1
Valid prediction for snap_scaffold_2-snap.1041-T1
Couldn't classify 168965, 169243
Sorry, prediction pasa_asmbl_23110.p1 fails validation.
(TAC)	 GC	168965-169243	GT	AGG
(ATG)	 AG	169627-169743	GT	AGG
(GAC)	 AG	169890-169958	GT	ACG
(GAG)	 AG	171254-171346	GT	TGG
(ACA)	 AG	171562-171706	GT	AGG
(AGC)	 AG	172032-172182	GT	GGG
(GCG)	 AG	172617-172641	GT	AGG
-recovered pasa_asmbl_23110.p1, initial, 169627, 169743
-recovered pasa_asmbl_23110.p1, terminal, 172617, 172641
-recovered pasa_asmbl_23110.p1, internal, 169627, 169743
-recovered pasa_asmbl_23110.p1, internal, 169890, 169958
-recovered pasa_asmbl_23110.p1, internal, 171254, 171346
-recovered pasa_asmbl_23110.p1, internal, 171562, 171706
-recovered pasa_asmbl_23110.p1, internal, 172032, 172182
-recovered pasa_asmbl_23110.p1, internal, 172617, 172641
Valid prediction for GlimmerHMM_glimmerT_3789-T1
Couldn't classify 109759, 110061
Sorry, prediction pasa_asmbl_24392.p1 fails validation.
(GTA)	 CC	109759-110061	GC	AGG
Valid prediction for GlimmerHMM_glimmerT_3797-T1
Valid prediction for snap_scaffold_2-snap.1030-T1
Valid prediction for snap_scaffold_2-snap.1050-T1
Valid prediction for GlimmerHMM_glimmerT_3788-T1
Valid prediction for GeneMark_model.6153_t
Valid prediction for GeneMark_model.6188_t
Valid prediction for GeneMark_model.6197_t
Valid prediction for GeneMark_model.6180_t
Valid prediction for HiQ_model.g2510.t1
Valid prediction for CodingQuarry_transcript_28477-T1
Valid prediction for GlimmerHMM_glimmerT_3768-T1
Valid prediction for GeneMark_model.6190_t
Valid prediction for snap_scaffold_2-snap.1067-T1
Valid prediction for GeneMark_model.6177_t
Valid prediction for snap_scaffold_2-snap.1046-T1
Valid prediction for GeneMark_model.6171_t
Valid prediction for Augustus_model.g2521.t1
Valid prediction for snap_scaffold_2-snap.1048-T1
Valid prediction for snap_scaffold_2-snap.1057-T1
Valid prediction for GeneMark_model.6169_t
Valid prediction for Augustus_model.g2526.t1
Valid prediction for snap_scaffold_2-snap.1033-T1
Valid prediction for Augustus_model.g2527.t1
Valid prediction for snap_scaffold_2-snap.1042-T1
Valid prediction for GlimmerHMM_glimmerT_3772-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 32327, rend_intergenic: 30348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36583, rend_intergenic: 33419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51332, rend_intergenic: 36865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58935, rend_intergenic: 54396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70228, rend_intergenic: 66683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84466, rend_intergenic: 80107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86156, rend_intergenic: 85989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97242, rend_intergenic: 86552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125365, rend_intergenic: 115002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137730, rend_intergenic: 129495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153131, rend_intergenic: 145471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164578, rend_intergenic: 156635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187289, rend_intergenic: 185715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 51332, rend_intergenic: 51329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194675
-exon list size: 777


building trellis

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41.8    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.5    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.4    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.6    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.5    
58.7    
58.8    
58.9    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.8    
62.9    
63.0    
63.2    
63.3    
63.4    
63.5    
63.7    
63.8    
63.9    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.3    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.6    
83.7    
83.8    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.7    
87.8    
87.9    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
92.9    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 32327, rend_intergenic: 30348  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36583, rend_intergenic: 33419  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51332, rend_intergenic: 36865  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58935, rend_intergenic: 54396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70228, rend_intergenic: 66683  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84466, rend_intergenic: 80107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86156, rend_intergenic: 85989  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97242, rend_intergenic: 86552  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125365, rend_intergenic: 115002  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137730, rend_intergenic: 129495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153131, rend_intergenic: 145471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164578, rend_intergenic: 156635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187289, rend_intergenic: 185715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 51332, rend_intergenic: 51329  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support