-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_3754839-3908121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2-snap.889-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.6018_t
Valid prediction for snap_scaffold_2-snap.887-T1
Valid prediction for GeneMark_model.6006_t
Valid prediction for snap_scaffold_2-snap.878-T1
Valid prediction for snap_scaffold_2-snap.898-T1
Valid prediction for snap_scaffold_2-snap.899-T1
Valid prediction for Augustus_model.g2436.t1
Valid prediction for GlimmerHMM_glimmerT_3667-T1
Valid prediction for pasa_asmbl_24340.p1
Valid prediction for GlimmerHMM_glimmerT_3671-T1
Valid prediction for CodingQuarry_transcript_28447-T1
Valid prediction for snap_scaffold_2-snap.901-T1
Valid prediction for GeneMark_model.6019_t
Valid prediction for snap_scaffold_2-snap.895-T1
Valid prediction for GeneMark_model.6029_t
Valid prediction for GeneMark_model.6012_t
Valid prediction for snap_scaffold_2-snap.883-T1
Valid prediction for snap_scaffold_2-snap.876-T1
Valid prediction for snap_scaffold_2-snap.885-T1
Valid prediction for GlimmerHMM_glimmerT_3674-T1
Valid prediction for GeneMark_model.6025_t
Valid prediction for GeneMark_model.6014_t
Valid prediction for GeneMark_model.6016_t
Valid prediction for snap_scaffold_2-snap.907-T1
Valid prediction for pasa_asmbl_24336.p1
Valid prediction for GeneMark_model.6008_t
Valid prediction for GeneMark_model.6002_t
Valid prediction for snap_scaffold_2-snap.903-T1
Couldn't classify 12938, 13184
Couldn't classify 15820, 15988
Sorry, prediction pasa_asmbl_24332.p1 fails validation.
(GCC)	 AG	12938-13184	GT	TGG
(ACT)	 AG	13364-13445	GT	AGG
(AGA)	 AG	13562-13642	GT	AGG
(GGT)	 AG	13754-13867	GT	AGG
(AGA)	 AG	14351-14426	GT	AGG
(AAG)	 AG	14774-14891	GT	AGG
(AGG)	 AG	15332-15431	GT	CAG
(GTG)	 AG	15820-15988	GG	AGG
-recovered pasa_asmbl_24332.p1, internal, 12938, 13184
-recovered pasa_asmbl_24332.p1, internal, 13364, 13445
-recovered pasa_asmbl_24332.p1, internal, 13562, 13642
-recovered pasa_asmbl_24332.p1, internal, 13754, 13867
-recovered pasa_asmbl_24332.p1, internal, 14351, 14426
-recovered pasa_asmbl_24332.p1, internal, 14774, 14891
-recovered pasa_asmbl_24332.p1, internal, 15332, 15431
Valid prediction for snap_scaffold_2-snap.880-T1
Valid prediction for GeneMark_model.6022_t
Valid prediction for GlimmerHMM_glimmerT_3668-T1
Valid prediction for GlimmerHMM_glimmerT_3690-T1
Valid prediction for snap_scaffold_2-snap.906-T1
Valid prediction for GeneMark_model.6010_t
Valid prediction for snap_scaffold_2-snap.892-T1
Valid prediction for GeneMark_model.6015_t
Valid prediction for GeneMark_model.6003_t
Valid prediction for GeneMark_model.6027_t
Valid prediction for GeneMark_model.6036_t
Valid prediction for GeneMark_model.6030_t
Valid prediction for GeneMark_model.5995_t
Valid prediction for Augustus_model.g2440.t1
Valid prediction for HiQ_model.g2456.t1
Valid prediction for GeneMark_model.6000_t
Valid prediction for GeneMark_model.5991_t
Valid prediction for GlimmerHMM_glimmerT_3661-T1
Valid prediction for HiQ_model.g2441.t1
Valid prediction for GlimmerHMM_glimmerT_3662-T1
Valid prediction for GeneMark_model.5993_t
Valid prediction for GlimmerHMM_glimmerT_3676-T1
Valid prediction for snap_scaffold_2-snap.913-T1
Valid prediction for GeneMark_model.6033_t
Valid prediction for GlimmerHMM_glimmerT_3682-T1
Valid prediction for snap_scaffold_2-snap.909-T1
Valid prediction for GeneMark_model.5998_t
Valid prediction for GlimmerHMM_glimmerT_3678-T1
Valid prediction for Augustus_model.g2451.t1
Valid prediction for CodingQuarry_transcript_28452-T1
Valid prediction for snap_scaffold_2-snap.884-T1
Valid prediction for snap_scaffold_2-snap.912-T1
Valid prediction for GeneMark_model.6020_t
Valid prediction for HiQ_model.g2448.t1
Valid prediction for GeneMark_model.6031_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.6001_t
Valid prediction for snap_scaffold_2-snap.894-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g2445.t1
Valid prediction for GeneMark_model.6035_t
Valid prediction for GeneMark_model.6013_t
Couldn't classify 4343, 4447
Sorry, prediction pasa_asmbl_23044.p1 fails validation.
(CTG)	 CC	4343-4447	GT	AGG
(GAC)	 AG	4549-4623	GT	AGG
(CGC)	 AG	4749-4909	GT	AGG
(GAG)	 AG	5044-5140	GT	AGG
(GGT)	 AG	5328-5525	TC	GAT
-recovered pasa_asmbl_23044.p1, terminal, 5328, 5525
-recovered pasa_asmbl_23044.p1, internal, 4549, 4623
-recovered pasa_asmbl_23044.p1, internal, 4749, 4909
-recovered pasa_asmbl_23044.p1, internal, 5044, 5140
Valid prediction for snap_scaffold_2-snap.914-T1
Couldn't classify 134834, 134875
Sorry, prediction pasa_asmbl_23025.p1 fails validation.
(CTG)	 AC	134834-134875	GT	AGG
(GAG)	 AG	135077-135179	GT	AGG
(ACC)	 AG	135325-135400	GT	AGG
(TCT)	 AG	135551-135701	GT	AGG
(ATG)	 AG	135914-136012	GT	AGG
(CTG)	 AG	136129-136227	AC	AGA
-recovered pasa_asmbl_23025.p1, initial, 135914, 136012
-recovered pasa_asmbl_23025.p1, terminal, 136129, 136227
-recovered pasa_asmbl_23025.p1, internal, 135077, 135179
-recovered pasa_asmbl_23025.p1, internal, 135325, 135400
-recovered pasa_asmbl_23025.p1, internal, 135551, 135701
-recovered pasa_asmbl_23025.p1, internal, 135914, 136012
Valid prediction for GlimmerHMM_glimmerT_3666-T1
Valid prediction for GlimmerHMM_glimmerT_3687-T1
Valid prediction for GlimmerHMM_glimmerT_3680-T1
Valid prediction for snap_scaffold_2-snap.911-T1
Valid prediction for snap_scaffold_2-snap.879-T1
Valid prediction for pasa_asmbl_23028.p1
Valid prediction for GeneMark_model.6032_t
Valid prediction for GeneMark_model.6009_t
Valid prediction for Augustus_model.g2453.t1
Valid prediction for GeneMark_model.5999_t
Valid prediction for GlimmerHMM_glimmerT_3673-T1
Valid prediction for snap_scaffold_2-snap.875-T1
Valid prediction for HiQ_model.g2455.t1
Valid prediction for GeneMark_model.6034_t
Valid prediction for GeneMark_model.6007_t
Valid prediction for CodingQuarry_transcript_28451-T1
Valid prediction for pasa_asmbl_23029.p1
Valid prediction for GeneMark_model.5997_t
Valid prediction for snap_scaffold_2-snap.886-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.908-T1
Valid prediction for CodingQuarry_transcript_28450-T1
Valid prediction for snap_scaffold_2-snap.881-T1
Valid prediction for Augustus_model.g2457.t1
Valid prediction for GlimmerHMM_glimmerT_3681-T1
Valid prediction for snap_scaffold_2-snap.893-T1
Valid prediction for GeneMark_model.6011_t
Valid prediction for GlimmerHMM_glimmerT_3691-T1
Valid prediction for CodingQuarry_transcript_28449-T1
Valid prediction for GeneMark_model.6023_t
Couldn't classify 43044, 43126
Sorry, prediction pasa_asmbl_23036.p1 fails validation.
(GAG)	 CA	43044-43126	GT	GGG
(GAT)	 AG	44333-44461	GT	GGG
(CTC)	 AG	45993-46071	GT	ATG
(TCG)	 AG	46174-46245	GT	AGG
(ATT)	 AG	46494-46582	GT	AGG
(GGA)	 AG	47882-48041	GT	TGG
(GCT)	 AG	49372-49505	GT	AAG
(GGA)	 AG	49667-49807	GT	AGG
(TCT)	 AG	49923-50043	GT	AGG
(CTG)	 AG	50153-50257	GT	AGG
(GTA)	 AG	50676-50772	GT	AGG
(GGA)	 AG	51083-51155	GT	TGG
(CTT)	 AG	51312-51411	GG	GAG
add_exon() Sorry, pasa_asmbl_23036.p1 50676-50772-terminal-3 is invalid.
-recovered pasa_asmbl_23036.p1, terminal, 50676, 50772
-recovered pasa_asmbl_23036.p1, terminal, 51312, 51411
-recovered pasa_asmbl_23036.p1, internal, 44333, 44461
-recovered pasa_asmbl_23036.p1, internal, 45993, 46071
-recovered pasa_asmbl_23036.p1, internal, 46174, 46245
-recovered pasa_asmbl_23036.p1, internal, 46494, 46582
-recovered pasa_asmbl_23036.p1, internal, 47882, 48041
-recovered pasa_asmbl_23036.p1, internal, 49372, 49505
-recovered pasa_asmbl_23036.p1, internal, 49667, 49807
-recovered pasa_asmbl_23036.p1, internal, 49923, 50043
-recovered pasa_asmbl_23036.p1, internal, 50153, 50257
-recovered pasa_asmbl_23036.p1, internal, 50676, 50772
-recovered pasa_asmbl_23036.p1, internal, 51083, 51155
Valid prediction for snap_scaffold_2-snap.910-T1
Valid prediction for GlimmerHMM_glimmerT_3683-T1
Valid prediction for pasa_asmbl_23043.p1
Valid prediction for GeneMark_model.6024_t
Valid prediction for CodingQuarry_transcript_28448-T1
Valid prediction for GlimmerHMM_glimmerT_3684-T1
Valid prediction for snap_scaffold_2-snap.900-T1
Valid prediction for GeneMark_model.6021_t
Valid prediction for GeneMark_model.5994_t
Valid prediction for GlimmerHMM_glimmerT_3672-T1
Valid prediction for HiQ_model.g2442.t1
Valid prediction for GlimmerHMM_glimmerT_3660-T1
Valid prediction for pasa_asmbl_23041.p1
Valid prediction for GeneMark_model.6026_t
Valid prediction for Augustus_model.g2446.t1
Valid prediction for GlimmerHMM_glimmerT_3677-T1
Couldn't classify 95910, 96000
Sorry, prediction pasa_asmbl_23031.p1 fails validation.
(GTG)	 CA	95910-96000	GT	CGG
(GTT)	 AG	96616-96806	GT	TGG
(GTG)	 AG	97147-97239	AG	GAA
-recovered pasa_asmbl_23031.p1, terminal, 97147, 97239
-recovered pasa_asmbl_23031.p1, internal, 96616, 96806
Valid prediction for snap_scaffold_2-snap.905-T1
Valid prediction for GlimmerHMM_glimmerT_3679-T1
Valid prediction for GlimmerHMM_glimmerT_3670-T1
Valid prediction for snap_scaffold_2-snap.902-T1
Valid prediction for GlimmerHMM_glimmerT_3675-T1
Valid prediction for GeneMark_model.6017_t
Valid prediction for GlimmerHMM_glimmerT_3688-T1
Couldn't classify 26248, 26384
Sorry, prediction pasa_asmbl_23040.p1 fails validation.
(ATG)	 TC	24123-24192	GT	AGG
(TGG)	 AG	24650-24806	GT	CTG
(GAA)	 AG	24937-25058	GT	GAG
(TGG)	 AG	26248-26384	AG	ACA
-recovered pasa_asmbl_23040.p1, initial, 24123, 24192
-recovered pasa_asmbl_23040.p1, internal, 24650, 24806
-recovered pasa_asmbl_23040.p1, internal, 24937, 25058
Valid prediction for snap_scaffold_2-snap.891-T1
Valid prediction for Augustus_model.g2444.t1
Valid prediction for snap_scaffold_2-snap.888-T1
Valid prediction for GeneMark_model.6005_t
Valid prediction for snap_scaffold_2-snap.877-T1
Valid prediction for GlimmerHMM_glimmerT_3663-T1
Valid prediction for Augustus_model.g2438.t1
Valid prediction for Augustus_model.g2443.t1
Valid prediction for GeneMark_model.5990_t
Valid prediction for GlimmerHMM_glimmerT_3664-T1
Valid prediction for GeneMark_model.6028_t
Couldn't classify 93331, 93488
Couldn't classify 94180, 94384
Sorry, prediction pasa_asmbl_24016.p1 fails validation.
(GAC)	 CC	93331-93488	GT	AGG
(ACT)	 AG	94180-94384	GT	AGG
-recovered pasa_asmbl_24016.p1, internal, 94180, 94384
Valid prediction for CodingQuarry_transcript_28444-T1
Couldn't classify 32226, 32308
Couldn't classify 36238, 36457
Sorry, prediction pasa_asmbl_23038.p1 fails validation.
(ACA)	 GA	32226-32308	GT	AGG
(GAC)	 AG	33626-33765	GT	AGG
(GTA)	 AG	34222-34462	GT	GGG
(CTG)	 AG	34865-34954	GT	GGG
(CTG)	 AG	36238-36457	CC	ACC
-recovered pasa_asmbl_23038.p1, internal, 33626, 33765
-recovered pasa_asmbl_23038.p1, internal, 34222, 34462
-recovered pasa_asmbl_23038.p1, internal, 34865, 34954
Valid prediction for GlimmerHMM_glimmerT_3685-T1
Valid prediction for Augustus_model.g2437.t1
Couldn't classify 2314, 2546
Couldn't classify 4075, 4158
Sorry, prediction pasa_asmbl_23046.p1 fails validation.
(CAG)	 TC	2314-2546	GT	AGG
(TGT)	 AG	2815-2995	GT	CAG
(TGG)	 AG	3182-3309	GT	AGG
(TAG)	 AG	3424-3565	GT	CAG
(GTT)	 AG	3712-3795	GT	AGG
(GTG)	 AG	3906-3953	GT	AGG
(GTT)	 AG	4075-4158	GA	GAG
-recovered pasa_asmbl_23046.p1, internal, 2815, 2995
-recovered pasa_asmbl_23046.p1, internal, 3182, 3309
-recovered pasa_asmbl_23046.p1, internal, 3424, 3565
-recovered pasa_asmbl_23046.p1, internal, 3712, 3795
-recovered pasa_asmbl_23046.p1, internal, 3906, 3953
Valid prediction for snap_scaffold_2-snap.890-T1
Valid prediction for HiQ_model.g2439.t1
Valid prediction for GlimmerHMM_glimmerT_3689-T1
Valid prediction for snap_scaffold_2-snap.882-T1
Valid prediction for GlimmerHMM_glimmerT_3686-T1
Valid prediction for CodingQuarry_transcript_28446-T1
Valid prediction for snap_scaffold_2-snap.897-T1
Valid prediction for HiQ_model.g2450.t1
Valid prediction for snap_scaffold_2-snap.896-T1
Valid prediction for Augustus_model.g2447.t1
Valid prediction for HiQ_model.g2454.t1
Valid prediction for Augustus_model.g2452.t1
Valid prediction for Augustus_model.g2449.t1
Couldn't classify 1898, 1992
Sorry, prediction pasa_asmbl_23047.p2 fails validation.
(ATG)	 CA	626-720	GT	AGG
(GTC)	 AG	968-1004	GT	GGG
(AAC)	 AG	1094-1243	GT	AGG
(GTC)	 AG	1686-1794	GT	AGG
(ATG)	 AG	1898-1992	CA	CCC
-recovered pasa_asmbl_23047.p2, initial, 626, 720
-recovered pasa_asmbl_23047.p2, internal, 968, 1004
-recovered pasa_asmbl_23047.p2, internal, 1094, 1243
-recovered pasa_asmbl_23047.p2, internal, 1686, 1794
Valid prediction for GlimmerHMM_glimmerT_3665-T1
Valid prediction for GeneMark_model.5992_t
Valid prediction for GlimmerHMM_glimmerT_3669-T1
Valid prediction for snap_scaffold_2-snap.904-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17346, rend_intergenic: 16290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19339, rend_intergenic: 17932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21857, rend_intergenic: 19339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28956, rend_intergenic: 22105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40515, rend_intergenic: 36467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49073, rend_intergenic: 47390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53225, rend_intergenic: 50678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58018, rend_intergenic: 56045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65120, rend_intergenic: 58327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77437, rend_intergenic: 67464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98056, rend_intergenic: 94447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104623, rend_intergenic: 101873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107376, rend_intergenic: 105072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112441, rend_intergenic: 107392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129161, rend_intergenic: 112556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135173, rend_intergenic: 132680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143411, rend_intergenic: 140110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153283
-exon list size: 846


building trellis

0.1    
0.2    
0.4    
0.5    
0.6    
0.7    
0.8    
0.9    
1.1    
1.2    
1.3    
1.4    
1.5    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.4    
2.5    
2.6    
2.7    
2.8    
2.9    
3.1    
3.2    
3.3    
3.4    
3.5    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.4    
4.5    
4.6    
4.7    
4.8    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.7    
5.8    
5.9    
6.0    
6.1    
6.2    
6.4    
6.5    
6.6    
6.7    
6.8    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.7    
7.8    
7.9    
8.0    
8.1    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
9.0    
9.1    
9.2    
9.3    
9.4    
9.6    
9.7    
9.8    
9.9    
10.0    
10.1    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
11.0    
11.1    
11.2    
11.3    
11.4    
11.6    
11.7    
11.8    
11.9    
12.0    
12.1    
12.3    
12.4    
12.5    
12.6    
12.7    
12.9    
13.0    
13.1    
13.2    
13.3    
13.4    
13.6    
13.7    
13.8    
13.9    
14.0    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.9    
15.0    
15.1    
15.2    
15.3    
15.4    
15.6    
15.7    
15.8    
15.9    
16.0    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.9    
17.0    
17.1    
17.2    
17.3    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.2    
18.3    
18.4    
18.5    
18.6    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.2    
20.3    
20.4    
20.5    
20.6    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.5    
21.6    
21.7    
21.8    
21.9    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.5    
23.6    
23.7    
23.8    
23.9    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.1    
25.2    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.1    
26.2    
26.3    
26.4    
26.5    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.1    
28.2    
28.3    
28.4    
28.5    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.4    
29.5    
29.6    
29.7    
29.8    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.4    
31.5    
31.6    
31.7    
31.8    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.7    
32.8    
32.9    
33.0    
33.1    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
34.0    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
36.0    
36.1    
36.2    
36.3    
36.4    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.7    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.6    
38.7    
38.8    
38.9    
39.0    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.2    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.5    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.8    
49.9    
50.0    
50.1    
50.2    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.5    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.8    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.2    
68.3    
68.4    
68.5    
68.6    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.4    
81.5    
81.6    
81.7    
81.8    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
84.0    
84.1    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.6    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.2    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 17346, rend_intergenic: 16290  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19339, rend_intergenic: 17932  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21857, rend_intergenic: 19339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28956, rend_intergenic: 22105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40515, rend_intergenic: 36467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49073, rend_intergenic: 47390  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53225, rend_intergenic: 50678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58018, rend_intergenic: 56045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65120, rend_intergenic: 58327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77437, rend_intergenic: 67464  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98056, rend_intergenic: 94447  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104623, rend_intergenic: 101873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107376, rend_intergenic: 105072  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112441, rend_intergenic: 107392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129161, rend_intergenic: 112556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135173, rend_intergenic: 132680  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143411, rend_intergenic: 140110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support