-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_3295017-3638727 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g2390.t1 Valid prediction for GlimmerHMM_glimmerT_3610-T1 Valid prediction for GeneMark_model.5908_t Valid prediction for HiQ_model.g2394.t1 Valid prediction for snap_scaffold_2-snap.775-T1 Valid prediction for GeneMark_model.5899_t Valid prediction for snap_scaffold_2-snap.771-T1 Valid prediction for GeneMark_model.5918_t Valid prediction for GlimmerHMM_glimmerT_3617-T1 Valid prediction for snap_scaffold_2-snap.767-T1 Valid prediction for snap_scaffold_2-snap.819-T1 Valid prediction for snap_scaffold_2-snap.795-T1 Valid prediction for snap_scaffold_2-snap.778-T1 Valid prediction for GeneMark_model.5924_t Valid prediction for Augustus_model.g2397.t1 Valid prediction for GeneMark_model.5907_t Valid prediction for GlimmerHMM_glimmerT_3626-T1 Valid prediction for GlimmerHMM_glimmerT_3590-T1 Valid prediction for CodingQuarry_transcript_28437-T1 Valid prediction for GlimmerHMM_glimmerT_3604-T1 Valid prediction for GlimmerHMM_glimmerT_3594-T1 Valid prediction for Augustus_model.g2410.t1 Valid prediction for GlimmerHMM_glimmerT_3627-T1 Valid prediction for pasa_asmbl_24301.p1 Valid prediction for Augustus_model.g2404.t1 Couldn't classify 163440, 163460 Sorry, prediction GeneMark_model.5871_t fails validation. (CGA) AG 163440-163460 GT GGG (AGG) AG 163504-163599 GT GAG (ACG) AG 163958-164032 GT TCG (ACA) AG 164064-164088 GA AAG -recovered GeneMark_model.5871_t, terminal, 164064, 164088 -recovered GeneMark_model.5871_t, internal, 163440, 163460 -recovered GeneMark_model.5871_t, internal, 163504, 163599 -recovered GeneMark_model.5871_t, internal, 163958, 164032 Valid prediction for GeneMark_model.5845_t Valid prediction for GeneMark_model.5887_t Valid prediction for Augustus_model.g2411.t1 Valid prediction for GeneMark_model.5914_t Couldn't classify 183923, 183984 Sorry, prediction pasa_asmbl_24310.p1 fails validation. (AGT) TA 183923-183984 GT AGG (TGC) AG 184149-184266 GT AGG (GGT) AG 184438-184671 CG AAC -recovered pasa_asmbl_24310.p1, terminal, 184438, 184671 -recovered pasa_asmbl_24310.p1, internal, 184149, 184266 Valid prediction for snap_scaffold_2-snap.786-T1 Valid prediction for GlimmerHMM_glimmerT_3605-T1 Valid prediction for HiQ_model.g2406.t1 Valid prediction for GeneMark_model.5858_t Valid prediction for GeneMark_model.5879_t Valid prediction for GeneMark_model.5875_t Valid prediction for Augustus_model.g2396.t1 Valid prediction for GeneMark_model.5873_t Valid prediction for GeneMark_model.5941_t Valid prediction for snap_scaffold_2-snap.807-T1 Valid prediction for GeneMark_model.5881_t Valid prediction for GeneMark_model.5936_t Valid prediction for GeneMark_model.5821_t Valid prediction for snap_scaffold_2-snap.826-T1 Valid prediction for Augustus_model.g2403.t1 Valid prediction for GeneMark_model.5921_t Valid prediction for GlimmerHMM_glimmerT_3600-T1 Couldn't classify 336769, 336885 Sorry, prediction pasa_asmbl_24315.p1 fails validation. (AAA) AA 336769-336885 GT GGG (GTC) AG 336992-337133 GT AGG (ATG) AG 337483-337632 GT AGG (GTA) AG 338025-338097 GT GGG (CTC) AG 338460-338631 GC AGG add_exon() Sorry, pasa_asmbl_24315.p1 337483-337632-initial-1 is invalid. -recovered pasa_asmbl_24315.p1, initial, 337483, 337632 add_exon() Sorry, pasa_asmbl_24315.p1 337483-337632-terminal-1 is invalid. -recovered pasa_asmbl_24315.p1, terminal, 337483, 337632 -recovered pasa_asmbl_24315.p1, terminal, 338460, 338631 -recovered pasa_asmbl_24315.p1, internal, 336992, 337133 -recovered pasa_asmbl_24315.p1, internal, 337483, 337632 -recovered pasa_asmbl_24315.p1, internal, 338025, 338097 -recovered pasa_asmbl_24315.p1, internal, 338460, 338631 Valid prediction for GlimmerHMM_glimmerT_3618-T1 Valid prediction for GeneMark_model.5835_t Valid prediction for GlimmerHMM_glimmerT_3608-T1 Valid prediction for snap_scaffold_2-snap.777-T1 Valid prediction for GlimmerHMM_glimmerT_3636-T1 Valid prediction for GeneMark_model.5824_t Valid prediction for GeneMark_model.5861_t Valid prediction for Augustus_model.g2415.t1 Valid prediction for GeneMark_model.5843_t Valid prediction for GeneMark_model.5910_t Valid prediction for GeneMark_model.5883_t Valid prediction for snap_scaffold_2-snap.831-T1 Valid prediction for Augustus_model.g2402.t1 Valid prediction for snap_scaffold_2-snap.829-T1 Valid prediction for GeneMark_model.5929_t Valid prediction for snap_scaffold_2-snap.790-T1 Couldn't classify 157592, 157703 Sorry, prediction GeneMark_model.5870_t fails validation. (ATG) CT 154799-155015 GT AGG (CAC) AG 156145-156288 GT TGG (CCA) AG 156519-157322 GT AGG (AGC) AG 157592-157703 GT TGG -recovered GeneMark_model.5870_t, initial, 154799, 155015 -recovered GeneMark_model.5870_t, internal, 156145, 156288 -recovered GeneMark_model.5870_t, internal, 156519, 157322 -recovered GeneMark_model.5870_t, internal, 157592, 157703 Valid prediction for GlimmerHMM_glimmerT_3580-T1 Valid prediction for snap_scaffold_2-snap.780-T1 Valid prediction for GlimmerHMM_glimmerT_3606-T1 Valid prediction for snap_scaffold_2-snap.770-T1 Valid prediction for GlimmerHMM_glimmerT_3628-T1 Valid prediction for snap_scaffold_2-snap.792-T1 Valid prediction for GeneMark_model.5864_t Valid prediction for GeneMark_model.5903_t Valid prediction for GlimmerHMM_glimmerT_3633-T1 Valid prediction for Augustus_model.g2385.t1 Valid prediction for GeneMark_model.5836_t Valid prediction for GlimmerHMM_glimmerT_3607-T1 Valid prediction for Augustus_model.g2401.t1 Valid prediction for snap_scaffold_2-snap.797-T1 Valid prediction for Augustus_model.g2398.t1 Valid prediction for snap_scaffold_2-snap.800-T1 Valid prediction for GeneMark_model.5896_t Valid prediction for snap_scaffold_2-snap.828-T1 Valid prediction for GlimmerHMM_glimmerT_3602-T1 Valid prediction for Augustus_model.g2400.t1 Valid prediction for snap_scaffold_2-snap.816-T1 Valid prediction for GeneMark_model.5829_t Valid prediction for GeneMark_model.5833_t Valid prediction for GeneMark_model.5848_t Valid prediction for snap_scaffold_2-snap.820-T1 Valid prediction for GeneMark_model.5846_t Valid prediction for GlimmerHMM_glimmerT_3585-T1 Valid prediction for Augustus_model.g2417.t1 Valid prediction for GlimmerHMM_glimmerT_3634-T1 Valid prediction for snap_scaffold_2-snap.798-T1 Valid prediction for snap_scaffold_2-snap.815-T1 Valid prediction for GeneMark_model.5841_t Valid prediction for GeneMark_model.5904_t Valid prediction for GeneMark_model.5866_t Valid prediction for GlimmerHMM_glimmerT_3583-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.5923_t Valid prediction for GeneMark_model.5906_t Valid prediction for GlimmerHMM_glimmerT_3593-T1 Valid prediction for GeneMark_model.5894_t Couldn't classify 66251, 66418 Sorry, prediction pasa_asmbl_24302.p1 fails validation. (GCA) CA 66251-66418 GT ACG (TAT) AG 66531-66647 GT AGG (AGC) AG 66786-66860 GT CTG (GCG) AG 66982-67077 GT AGG (GTG) AG 67448-67549 GT AGG (TCC) AG 67811-67873 TG GAT -recovered pasa_asmbl_24302.p1, terminal, 67811, 67873 -recovered pasa_asmbl_24302.p1, internal, 66531, 66647 -recovered pasa_asmbl_24302.p1, internal, 66786, 66860 -recovered pasa_asmbl_24302.p1, internal, 66982, 67077 -recovered pasa_asmbl_24302.p1, internal, 67448, 67549 Valid prediction for GlimmerHMM_glimmerT_3599-T1 Valid prediction for GeneMark_model.5853_t Valid prediction for GeneMark_model.5939_t Valid prediction for GlimmerHMM_glimmerT_3631-T1 Valid prediction for GeneMark_model.5831_t Valid prediction for GeneMark_model.5837_t Valid prediction for GeneMark_model.5898_t Couldn't classify 173981, 174044 Sorry, prediction pasa_asmbl_24308.p1 fails validation. (CAC) GC 173981-174044 GT TGG (TGC) AG 174184-174267 GT AGG (CGG) AG 174590-174730 GT CGG (ACG) AG 175107-175157 GT GGG (GAA) AG 175353-175411 GG GAG -recovered pasa_asmbl_24308.p1, terminal, 175353, 175411 -recovered pasa_asmbl_24308.p1, internal, 174184, 174267 -recovered pasa_asmbl_24308.p1, internal, 174590, 174730 -recovered pasa_asmbl_24308.p1, internal, 175107, 175157 Valid prediction for GeneMark_model.5851_t Valid prediction for Augustus_model.g2395.t1 Valid prediction for GeneMark_model.5911_t Valid prediction for GlimmerHMM_glimmerT_3592-T1 Valid prediction for GeneMark_model.5901_t Valid prediction for snap_scaffold_2-snap.808-T1 Valid prediction for HiQ_model.g2389.t1 Valid prediction for GeneMark_model.5926_t Valid prediction for snap_scaffold_2-snap.766-T1 Valid prediction for GeneMark_model.5919_t Valid prediction for snap_scaffold_2-snap.841-T1 Couldn't classify 334313, 334390 Sorry, prediction pasa_asmbl_24312.p1 fails validation. (ACC) AC 334313-334390 GT CTG (GTG) AG 334736-334869 GT AGG (CAC) AG 335076-335229 GT TGG (ACT) AG 335581-335685 GT AGG (ACT) AG 335862-335963 GT AGG (ATG) AG 336223-336363 GT TGG (GCA) AG 336805-336885 GT GGG (GTC) AG 336992-337133 GT AGG (ATG) AG 337483-337632 GT AGG (GTA) AG 338025-338097 GT GGG (CTC) AG 338460-338631 GC AGG -recovered pasa_asmbl_24312.p1, initial, 336223, 336363 add_exon() Sorry, pasa_asmbl_24312.p1 337483-337632-initial-1 is invalid. -recovered pasa_asmbl_24312.p1, initial, 337483, 337632 add_exon() Sorry, pasa_asmbl_24312.p1 337483-337632-terminal-1 is invalid. -recovered pasa_asmbl_24312.p1, terminal, 337483, 337632 -recovered pasa_asmbl_24312.p1, terminal, 338460, 338631 -recovered pasa_asmbl_24312.p1, internal, 334736, 334869 -recovered pasa_asmbl_24312.p1, internal, 335076, 335229 -recovered pasa_asmbl_24312.p1, internal, 335581, 335685 -recovered pasa_asmbl_24312.p1, internal, 335862, 335963 -recovered pasa_asmbl_24312.p1, internal, 336223, 336363 -recovered pasa_asmbl_24312.p1, internal, 336805, 336885 -recovered pasa_asmbl_24312.p1, internal, 336992, 337133 -recovered pasa_asmbl_24312.p1, internal, 337483, 337632 -recovered pasa_asmbl_24312.p1, internal, 338025, 338097 -recovered pasa_asmbl_24312.p1, internal, 338460, 338631 Valid prediction for GlimmerHMM_glimmerT_3596-T1 Valid prediction for Augustus_model.g2392.t1 Valid prediction for GlimmerHMM_glimmerT_3623-T1 Valid prediction for GeneMark_model.5934_t Valid prediction for GeneMark_model.5854_t Valid prediction for GeneMark_model.5868_t Valid prediction for GeneMark_model.5937_t Valid prediction for GeneMark_model.5885_t Valid prediction for GeneMark_model.5892_t Valid prediction for GeneMark_model.5859_t Valid prediction for GeneMark_model.5916_t Valid prediction for GlimmerHMM_glimmerT_3635-T1 Valid prediction for snap_scaffold_2-snap.796-T1 Couldn't classify 43275, 43372 Sorry, prediction pasa_asmbl_24300.p1 fails validation. (ATG) TT 39686-39764 GT TGG (GCC) AG 40497-40686 GT ATG (GTG) AG 40858-40996 GT CGG (GTC) AG 41450-41737 GT TGG (CTT) AG 41826-41930 GT AGG (TTG) AG 42341-42439 GT AGG (GAC) AG 42635-42778 GT GCG (TTC) AG 42870-42947 GT ATG (CCT) AG 43031-43178 GT AGG (ATG) AG 43275-43372 CT ACC -recovered pasa_asmbl_24300.p1, initial, 39686, 39764 -recovered pasa_asmbl_24300.p1, internal, 40497, 40686 -recovered pasa_asmbl_24300.p1, internal, 40858, 40996 -recovered pasa_asmbl_24300.p1, internal, 41450, 41737 -recovered pasa_asmbl_24300.p1, internal, 41826, 41930 -recovered pasa_asmbl_24300.p1, internal, 42341, 42439 -recovered pasa_asmbl_24300.p1, internal, 42635, 42778 -recovered pasa_asmbl_24300.p1, internal, 42870, 42947 -recovered pasa_asmbl_24300.p1, internal, 43031, 43178 Valid prediction for GeneMark_model.5850_t Valid prediction for GeneMark_model.5863_t Valid prediction for GeneMark_model.5930_t Valid prediction for GlimmerHMM_glimmerT_3598-T1 Valid prediction for GlimmerHMM_glimmerT_3587-T1 Valid prediction for GeneMark_model.5889_t Valid prediction for GeneMark_model.5877_t Valid prediction for snap_scaffold_2-snap.774-T1 Valid prediction for GlimmerHMM_glimmerT_3619-T1 Valid prediction for snap_scaffold_2-snap.822-T1 Valid prediction for GeneMark_model.5857_t Valid prediction for GlimmerHMM_glimmerT_3597-T1 Valid prediction for snap_scaffold_2-snap.794-T1 Couldn't classify 80195, 80330 Sorry, prediction pasa_asmbl_24304.p1 fails validation. (ATG) CG 79827-80035 GT TGG (GAT) AG 80195-80330 GA GTG -recovered pasa_asmbl_24304.p1, initial, 79827, 80035 Valid prediction for snap_scaffold_2-snap.810-T1 Valid prediction for snap_scaffold_2-snap.805-T1 Valid prediction for snap_scaffold_2-snap.784-T1 Valid prediction for snap_scaffold_2-snap.818-T1 Valid prediction for GeneMark_model.5927_t Valid prediction for GlimmerHMM_glimmerT_3578-T1 Valid prediction for GeneMark_model.5827_t Valid prediction for snap_scaffold_2-snap.772-T1 Valid prediction for snap_scaffold_2-snap.834-T1 Valid prediction for GeneMark_model.5839_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_3616-T1 Valid prediction for GeneMark_model.5895_t Couldn't classify 314456, 314500 Sorry, prediction pasa_asmbl_22994.p1 fails validation. (ATG) GA 307190-307262 GT TGG (ACA) AG 307394-307494 GT AGG (GCC) AG 307758-307960 GT TGG (TGT) AG 308298-308399 GT AAG (CGC) AG 308527-308699 GT GGG (ATG) AG 309599-309838 GT CTG (GTC) AG 310746-310904 GT AGG (AGG) AG 313053-313183 GT TGG (ATT) AG 314456-314500 GA AGG -recovered pasa_asmbl_22994.p1, initial, 307190, 307262 add_exon() Sorry, pasa_asmbl_22994.p1 309599-309838-initial-1 is invalid. -recovered pasa_asmbl_22994.p1, initial, 309599, 309838 -recovered pasa_asmbl_22994.p1, internal, 307394, 307494 -recovered pasa_asmbl_22994.p1, internal, 307758, 307960 -recovered pasa_asmbl_22994.p1, internal, 308298, 308399 -recovered pasa_asmbl_22994.p1, internal, 308527, 308699 -recovered pasa_asmbl_22994.p1, internal, 309599, 309838 -recovered pasa_asmbl_22994.p1, internal, 310746, 310904 -recovered pasa_asmbl_22994.p1, internal, 313053, 313183 Valid prediction for snap_scaffold_2-snap.779-T1 Valid prediction for GeneMark_model.5931_t Valid prediction for snap_scaffold_2-snap.811-T1 Valid prediction for snap_scaffold_2-snap.817-T1 Valid prediction for GeneMark_model.5840_t Valid prediction for snap_scaffold_2-snap.827-T1 Valid prediction for snap_scaffold_2-snap.806-T1 Valid prediction for GeneMark_model.5882_t Valid prediction for GlimmerHMM_glimmerT_3624-T1 Valid prediction for GeneMark_model.5855_t Valid prediction for snap_scaffold_2-snap.793-T1 Valid prediction for Augustus_model.g2416.t1 Valid prediction for GlimmerHMM_glimmerT_3579-T1 Valid prediction for GeneMark_model.5922_t Valid prediction for GlimmerHMM_glimmerT_3615-T1 Valid prediction for snap_scaffold_2-snap.835-T1 Valid prediction for GeneMark_model.5925_t Valid prediction for Augustus_model.g2413.t1 Valid prediction for GlimmerHMM_glimmerT_3611-T1 Valid prediction for snap_scaffold_2-snap.824-T1 Valid prediction for GeneMark_model.5842_t Couldn't classify 122066, 122123 Sorry, prediction pasa_asmbl_23010.p1 fails validation. (ATG) CG 113692-114639 GT ATG (GAT) AG 115127-115211 GT AGG (GAA) AG 115563-115714 GT GGG (GGT) AG 115830-115925 GT AGG (GTG) AG 116637-116788 GT GAG (TGA) AG 117555-117584 GT GGG (TGG) AG 117723-117843 GT CTG (GAG) AG 118028-118302 GT AGG (CAG) AG 121002-121184 GT AGG (GTC) AG 121604-121723 GT AGG (GTC) AG 122066-122123 CC AAC -recovered pasa_asmbl_23010.p1, initial, 113692, 114639 -recovered pasa_asmbl_23010.p1, internal, 115127, 115211 -recovered pasa_asmbl_23010.p1, internal, 115563, 115714 -recovered pasa_asmbl_23010.p1, internal, 115830, 115925 -recovered pasa_asmbl_23010.p1, internal, 116637, 116788 -recovered pasa_asmbl_23010.p1, internal, 117555, 117584 -recovered pasa_asmbl_23010.p1, internal, 117723, 117843 -recovered pasa_asmbl_23010.p1, internal, 118028, 118302 -recovered pasa_asmbl_23010.p1, internal, 121002, 121184 -recovered pasa_asmbl_23010.p1, internal, 121604, 121723 Valid prediction for GeneMark_model.5834_t Valid prediction for CodingQuarry_transcript_28433-T1 Valid prediction for snap_scaffold_2-snap.837-T1 Valid prediction for GeneMark_model.5890_t Valid prediction for GeneMark_model.5872_t Valid prediction for snap_scaffold_2-snap.781-T1 Valid prediction for GlimmerHMM_glimmerT_3613-T1 Valid prediction for GeneMark_model.5915_t Valid prediction for snap_scaffold_2-snap.813-T1 Valid prediction for snap_scaffold_2-snap.802-T1 Valid prediction for Augustus_model.g2412.t1 Valid prediction for GlimmerHMM_glimmerT_3629-T1 Couldn't classify 271149, 271190 Couldn't classify 272741, 272795 Sorry, prediction pasa_asmbl_24012.p1 fails validation. (TTA) CC 271149-271190 GT CGG (GTG) AG 271429-271506 GT AGG (GGA) AG 271780-271899 GT AGG (GAC) AG 271996-272156 GT AGG (TTC) AG 272741-272795 TC GGT -recovered pasa_asmbl_24012.p1, internal, 271429, 271506 -recovered pasa_asmbl_24012.p1, internal, 271780, 271899 -recovered pasa_asmbl_24012.p1, internal, 271996, 272156 Valid prediction for GlimmerHMM_glimmerT_3589-T1 Valid prediction for snap_scaffold_2-snap.788-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.5867_t Valid prediction for GeneMark_model.5942_t Valid prediction for Augustus_model.g2414.t1 Valid prediction for Augustus_model.g2388.t1 Valid prediction for snap_scaffold_2-snap.783-T1 Sorry, intron length (4) is less than minimum required (10) Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_2-snap.840-T1 Valid prediction for GeneMark_model.5860_t Valid prediction for GeneMark_model.5847_t Valid prediction for GeneMark_model.5900_t Valid prediction for CodingQuarry_transcript_28432-T1 Valid prediction for GeneMark_model.5822_t Valid prediction for GeneMark_model.5888_t Valid prediction for snap_scaffold_2-snap.830-T1 Valid prediction for GeneMark_model.5844_t Valid prediction for GlimmerHMM_glimmerT_3632-T1 Valid prediction for snap_scaffold_2-snap.787-T1 Valid prediction for snap_scaffold_2-snap.769-T1 Valid prediction for GeneMark_model.5933_t Valid prediction for Augustus_model.g2409.t1 Valid prediction for pasa_asmbl_23003.p1 Valid prediction for snap_scaffold_2-snap.832-T1 Valid prediction for GlimmerHMM_glimmerT_3612-T1 Valid prediction for snap_scaffold_2-snap.814-T1 Valid prediction for GeneMark_model.5886_t Valid prediction for GlimmerHMM_glimmerT_3625-T1 Valid prediction for GeneMark_model.5828_t Valid prediction for HiQ_model.g2405.t1 Valid prediction for GlimmerHMM_glimmerT_3609-T1 Valid prediction for GeneMark_model.5913_t Valid prediction for GeneMark_model.5869_t Valid prediction for snap_scaffold_2-snap.812-T1 Valid prediction for GeneMark_model.5849_t Valid prediction for GeneMark_model.5920_t Valid prediction for GeneMark_model.5897_t Valid prediction for GlimmerHMM_glimmerT_3601-T1 Valid prediction for CodingQuarry_transcript_28439-T1 Valid prediction for Augustus_model.g2399.t1 Valid prediction for GeneMark_model.5935_t Valid prediction for GeneMark_model.5865_t Valid prediction for CodingQuarry_transcript_28434-T1 Valid prediction for Augustus_model.g2387.t1 Valid prediction for GlimmerHMM_glimmerT_3620-T1 Valid prediction for snap_scaffold_2-snap.821-T1 Valid prediction for GeneMark_model.5878_t Valid prediction for GeneMark_model.5856_t Valid prediction for GeneMark_model.5830_t Valid prediction for snap_scaffold_2-snap.809-T1 Valid prediction for GlimmerHMM_glimmerT_3630-T1 Valid prediction for snap_scaffold_2-snap.833-T1 Valid prediction for snap_scaffold_2-snap.773-T1 Couldn't classify 133557, 133796 Couldn't classify 139784, 139881 Sorry, prediction pasa_asmbl_23007.p1 fails validation. (GTG) GG 133557-133796 GT AGG (GAG) AG 134031-134147 GT AGG (GTC) AG 134485-134632 GT AGG (GGG) AG 134822-134928 GT AGG (GTC) AG 135056-135218 GT GGG (GAG) AG 135426-135493 GT AGG (GTG) AG 135576-135688 GT CGG (CGC) AG 135871-136059 GT AGG (CGA) AG 136223-136349 GT AGG (GAG) AG 136524-136724 GT AGG (GTG) AG 137442-137582 GT AGG (CTG) AG 138012-138761 GT CGG (CTG) AG 139608-139665 GT AGG (GTT) AG 139784-139881 CC CCC -recovered pasa_asmbl_23007.p1, internal, 134031, 134147 -recovered pasa_asmbl_23007.p1, internal, 134485, 134632 -recovered pasa_asmbl_23007.p1, internal, 134822, 134928 -recovered pasa_asmbl_23007.p1, internal, 135056, 135218 -recovered pasa_asmbl_23007.p1, internal, 135426, 135493 -recovered pasa_asmbl_23007.p1, internal, 135576, 135688 -recovered pasa_asmbl_23007.p1, internal, 135871, 136059 -recovered pasa_asmbl_23007.p1, internal, 136223, 136349 -recovered pasa_asmbl_23007.p1, internal, 136524, 136724 -recovered pasa_asmbl_23007.p1, internal, 137442, 137582 -recovered pasa_asmbl_23007.p1, internal, 138012, 138761 -recovered pasa_asmbl_23007.p1, internal, 139608, 139665 Valid prediction for GeneMark_model.5932_t Valid prediction for Augustus_model.g2408.t1 Valid prediction for GeneMark_model.5902_t Valid prediction for snap_scaffold_2-snap.789-T1 Valid prediction for GeneMark_model.5823_t Couldn't classify 133141, 133457 Sorry, prediction pasa_asmbl_23008.p1 fails validation. (ATG) AG 132708-132759 GT GGG (AGG) AG 133141-133457 CC CGC -recovered pasa_asmbl_23008.p1, initial, 132708, 132759 -recovered pasa_asmbl_23008.p1, internal, 132708, 132759 Valid prediction for GlimmerHMM_glimmerT_3581-T1 Valid prediction for snap_scaffold_2-snap.801-T1 Valid prediction for GeneMark_model.5912_t Valid prediction for GlimmerHMM_glimmerT_3621-T1 Valid prediction for CodingQuarry_transcript_28438-T1 Valid prediction for snap_scaffold_2-snap.791-T1 Valid prediction for GeneMark_model.5905_t Valid prediction for GeneMark_model.5874_t Valid prediction for GeneMark_model.5880_t Valid prediction for GlimmerHMM_glimmerT_3591-T1 Valid prediction for snap_scaffold_2-snap.825-T1 Valid prediction for Augustus_model.g2393.t1 Valid prediction for snap_scaffold_2-snap.838-T1 Valid prediction for snap_scaffold_2-snap.836-T1 Valid prediction for snap_scaffold_2-snap.803-T1 Valid prediction for snap_scaffold_2-snap.776-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_2-snap.799-T1 Valid prediction for GlimmerHMM_glimmerT_3588-T1 Valid prediction for CodingQuarry_transcript_28431-T1 Valid prediction for snap_scaffold_2-snap.823-T1 Valid prediction for GeneMark_model.5876_t Valid prediction for GeneMark_model.5891_t Valid prediction for GeneMark_model.5826_t Valid prediction for snap_scaffold_2-snap.842-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_3614-T1 Valid prediction for GlimmerHMM_glimmerT_3586-T1 Valid prediction for GeneMark_model.5838_t Valid prediction for GeneMark_model.5832_t Valid prediction for GeneMark_model.5893_t Valid prediction for snap_scaffold_2-snap.768-T1 Valid prediction for snap_scaffold_2-snap.804-T1 Valid prediction for pasa_asmbl_22996.p1 Valid prediction for GeneMark_model.5852_t Valid prediction for snap_scaffold_2-snap.782-T1 Valid prediction for snap_scaffold_2-snap.839-T1 Valid prediction for GlimmerHMM_glimmerT_3622-T1 Valid prediction for GeneMark_model.5909_t Valid prediction for HiQ_model.g2391.t1 Valid prediction for GlimmerHMM_glimmerT_3595-T1 Couldn't classify 143244, 143396 Sorry, prediction pasa_asmbl_23005.p1 fails validation. (GGT) CA 143244-143396 GT AGG (CTG) AG 144976-145089 GT AGG (GTT) AG 146655-146831 GA GAG -recovered pasa_asmbl_23005.p1, terminal, 146655, 146831 -recovered pasa_asmbl_23005.p1, internal, 144976, 145089 Valid prediction for snap_scaffold_2-snap.785-T1 Valid prediction for GeneMark_model.5825_t Valid prediction for GeneMark_model.5862_t Valid prediction for GlimmerHMM_glimmerT_3584-T1 Valid prediction for Augustus_model.g2407.t1 Valid prediction for GeneMark_model.5884_t Couldn't classify 125755, 125830 Sorry, prediction pasa_asmbl_23009.p1 fails validation. (CCC) AC 125755-125830 GT AGG (GGA) AG 125983-126251 GT AGG (CAG) AG 126866-126965 GC AGG (GTC) AG 127283-127457 GT AGG (GAA) AG 128668-128914 AG AGA -recovered pasa_asmbl_23009.p1, terminal, 128668, 128914 -recovered pasa_asmbl_23009.p1, internal, 125983, 126251 -recovered pasa_asmbl_23009.p1, internal, 126866, 126965 -recovered pasa_asmbl_23009.p1, internal, 127283, 127457 Valid prediction for GeneMark_model.5917_t Valid prediction for GlimmerHMM_glimmerT_3582-T1 Valid prediction for GeneMark_model.5928_t Valid prediction for GlimmerHMM_glimmerT_3603-T1 Valid prediction for Augustus_model.g2386.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8586, rend_intergenic: 6001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20865, rend_intergenic: 11582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23201, rend_intergenic: 21809 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28266, rend_intergenic: 23336 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35958, rend_intergenic: 28631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69547, rend_intergenic: 56880 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70992, rend_intergenic: 69551 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75787, rend_intergenic: 71510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109574, rend_intergenic: 77206 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124781, rend_intergenic: 111922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132666, rend_intergenic: 128033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138800, rend_intergenic: 133963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140301, rend_intergenic: 138998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166204, rend_intergenic: 154650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169679, rend_intergenic: 166221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175411, rend_intergenic: 170450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196866, rend_intergenic: 187519 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206315, rend_intergenic: 196881 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207336, rend_intergenic: 206462 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208731, rend_intergenic: 207357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222703, rend_intergenic: 216276 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230078, rend_intergenic: 224553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 245648, rend_intergenic: 243432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 253173, rend_intergenic: 247202 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258469, rend_intergenic: 256543 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260944, rend_intergenic: 258760 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 264083, rend_intergenic: 263401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 273645, rend_intergenic: 265301 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283007, rend_intergenic: 279204 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 298057, rend_intergenic: 283921 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 325774, rend_intergenic: 298901 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 333229, rend_intergenic: 331367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 338631, rend_intergenic: 334939 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 343711 -exon list size: 1657 building trellis 0.1 0.1 0.2 0.2 0.3 0.4 0.4 0.5 0.5 0.6 0.7 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.0 2.1 2.2 2.2 2.3 2.4 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.1 3.2 3.3 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.7 3.8 3.9 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.3 4.4 4.5 4.5 4.6 4.6 4.7 4.8 4.8 4.9 4.9 5.0 5.1 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.5 5.6 5.7 5.7 5.8 5.8 5.9 6.0 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.8 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.2 7.3 7.4 7.4 7.5 7.5 7.6 7.7 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.1 8.2 8.3 8.3 8.4 8.4 8.5 8.6 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.0 9.1 9.2 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.6 9.7 9.8 9.8 9.9 9.9 10.0 10.1 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.5 10.6 10.7 10.7 10.8 10.8 10.9 11.0 11.0 11.1 11.2 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.6 11.7 11.8 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.8 12.9 13.0 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.4 13.5 13.6 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.3 14.4 14.5 14.5 14.6 14.6 14.7 14.8 14.8 14.9 14.9 15.0 15.1 15.1 15.2 15.3 15.3 15.4 15.4 15.5 15.6 15.6 15.7 15.7 15.8 15.9 15.9 16.0 16.0 16.1 16.2 16.2 16.3 16.3 16.4 16.5 16.5 16.6 16.6 16.7 16.8 16.8 16.9 16.9 17.0 17.1 17.1 17.2 17.2 17.3 17.4 17.4 17.5 17.5 17.6 17.7 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.4 18.5 18.6 18.6 18.7 18.7 18.8 18.9 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.3 19.4 19.5 19.5 19.6 19.7 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.1 20.2 20.3 20.3 20.4 20.4 20.5 20.6 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.3 21.4 21.5 21.5 21.6 21.6 21.7 21.8 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.1 23.2 23.3 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.8 24.9 25.0 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.6 26.7 26.8 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.1 28.2 28.3 28.3 28.4 28.5 28.5 28.6 28.6 28.7 28.8 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.5 29.6 29.7 29.7 29.8 29.8 29.9 30.0 30.0 30.1 30.1 30.2 30.3 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.0 31.1 31.2 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.6 31.7 31.8 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.5 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.6 33.7 33.8 33.8 33.9 33.9 34.0 34.1 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.8 34.9 35.0 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.7 35.8 35.9 35.9 36.0 36.0 36.1 36.2 36.2 36.3 36.3 36.4 36.5 36.5 36.6 36.6 36.7 36.8 36.8 36.9 36.9 37.0 37.1 37.1 37.2 37.3 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.7 37.8 37.9 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.3 38.4 38.5 38.5 38.6 38.6 38.7 38.8 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.5 39.6 39.7 39.7 39.8 39.8 39.9 40.0 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.4 40.5 40.6 40.6 40.7 40.7 40.8 40.9 40.9 41.0 41.0 41.1 41.2 41.2 41.3 41.4 41.4 41.5 41.5 41.6 41.7 41.7 41.8 41.8 41.9 42.0 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.4 42.5 42.6 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.0 43.1 43.2 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.6 43.7 43.8 43.8 43.9 43.9 44.0 44.1 44.1 44.2 44.2 44.3 44.4 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.8 44.9 45.0 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.8 45.8 45.9 45.9 46.0 46.1 46.1 46.2 46.2 46.3 46.4 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.1 47.2 47.3 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.7 47.8 47.9 47.9 48.0 48.0 48.1 48.2 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.6 48.7 48.8 48.8 48.9 48.9 49.0 49.1 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.6 50.7 50.8 50.8 50.9 50.9 51.0 51.1 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.8 51.9 52.0 52.0 52.1 52.1 52.2 52.3 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.7 52.8 52.9 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.6 53.7 53.8 53.8 53.9 53.9 54.0 54.1 54.1 54.2 54.2 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.0 55.1 55.2 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.6 55.7 55.8 55.8 55.9 55.9 56.0 56.1 56.1 56.2 56.2 56.3 56.4 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.8 56.9 57.0 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.4 57.5 57.6 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.0 58.1 58.2 58.2 58.3 58.3 58.4 58.5 58.5 58.6 58.6 58.7 58.8 58.8 58.9 59.0 59.0 59.1 59.1 59.2 59.3 59.3 59.4 59.4 59.5 59.6 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.0 60.1 60.2 60.2 60.3 60.3 60.4 60.5 60.5 60.6 60.6 60.7 60.8 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.5 61.6 61.7 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.1 62.2 62.3 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.7 62.8 62.9 62.9 63.0 63.1 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.5 63.6 63.7 63.7 63.8 63.8 63.9 64.0 64.0 64.1 64.1 64.2 64.3 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.0 65.1 65.2 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.6 65.7 65.8 65.8 65.9 65.9 66.0 66.1 66.1 66.2 66.2 66.3 66.4 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.5 67.5 67.6 67.6 67.7 67.8 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.2 68.3 68.4 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.8 68.9 69.0 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.7 69.8 69.9 69.9 70.0 70.0 70.1 70.2 70.2 70.3 70.3 70.4 70.5 70.5 70.6 70.6 70.7 70.8 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.5 71.6 71.7 71.7 71.8 71.9 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.6 72.7 72.8 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.0 75.1 75.2 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.7 76.8 76.9 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.6 77.7 77.8 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.2 78.3 78.4 78.4 78.5 78.5 78.6 78.7 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.4 79.5 79.6 79.6 79.7 79.7 79.8 79.9 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.3 80.4 80.5 80.5 80.6 80.7 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.1 81.2 81.3 81.3 81.4 81.4 81.5 81.6 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.3 82.4 82.5 82.5 82.6 82.6 82.7 82.8 82.8 82.9 82.9 83.0 83.1 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.5 83.6 83.7 83.7 83.8 83.8 83.9 84.0 84.0 84.1 84.1 84.2 84.3 84.3 84.4 84.4 84.5 84.6 84.6 84.7 84.7 84.8 84.9 84.9 85.0 85.1 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.5 85.6 85.7 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.4 86.5 86.6 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.0 87.1 87.2 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.6 87.7 87.8 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.2 88.3 88.4 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.8 88.9 89.0 89.0 89.1 89.2 89.2 89.3 89.3 89.4 89.5 89.5 89.6 89.6 89.7 89.8 89.8 89.9 89.9 90.0 90.1 90.1 90.2 90.2 90.3 90.4 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.8 90.9 91.0 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.4 91.5 91.6 91.6 91.7 91.7 91.8 91.9 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.3 92.4 92.5 92.5 92.6 92.6 92.7 92.8 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.0 94.1 94.2 94.2 94.3 94.3 94.4 94.5 94.5 94.6 94.6 94.7 94.8 94.8 94.9 94.9 95.0 95.1 95.1 95.2 95.2 95.3 95.4 95.4 95.5 95.5 95.6 95.7 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.1 96.2 96.3 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.7 96.8 96.9 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.6 97.7 97.8 97.8 97.9 98.0 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.3 99.4 99.5 99.5 99.6 99.6 99.7 99.8 99.8 99.9 99.9 -found 85 predictions from path traversal Error with prediction: snap lend_intergenic: 8586, rend_intergenic: 6001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 20865, rend_intergenic: 11582 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23201, rend_intergenic: 21809 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28266, rend_intergenic: 23336 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35958, rend_intergenic: 28631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69547, rend_intergenic: 56880 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70992, rend_intergenic: 69551 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75787, rend_intergenic: 71510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109574, rend_intergenic: 77206 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124781, rend_intergenic: 111922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132666, rend_intergenic: 128033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 138800, rend_intergenic: 133963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140301, rend_intergenic: 138998 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166204, rend_intergenic: 154650 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169679, rend_intergenic: 166221 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 175411, rend_intergenic: 170450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196866, rend_intergenic: 187519 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 206315, rend_intergenic: 196881 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 207336, rend_intergenic: 206462 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208731, rend_intergenic: 207357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 222703, rend_intergenic: 216276 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230078, rend_intergenic: 224553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 245648, rend_intergenic: 243432 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 253173, rend_intergenic: 247202 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258469, rend_intergenic: 256543 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260944, rend_intergenic: 258760 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 264083, rend_intergenic: 263401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 273645, rend_intergenic: 265301 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283007, rend_intergenic: 279204 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 298057, rend_intergenic: 283921 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 325774, rend_intergenic: 298901 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 333229, rend_intergenic: 331367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 338631, rend_intergenic: 334939 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 38 predictions persist after filtering for low support