-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_3229665-3297399

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_3567-T1
Valid prediction for snap_scaffold_2-snap.756-T1
Valid prediction for GlimmerHMM_glimmerT_3574-T1
Valid prediction for snap_scaffold_2-snap.761-T1
Valid prediction for Augustus_model.g2380.t1
Valid prediction for GeneMark_model.5807_t
Valid prediction for GeneMark_model.5819_t
Valid prediction for GlimmerHMM_glimmerT_3571-T1
Valid prediction for GeneMark_model.5800_t
Valid prediction for snap_scaffold_2-snap.754-T1
Valid prediction for GlimmerHMM_glimmerT_3569-T1
Valid prediction for snap_scaffold_2-snap.757-T1
Valid prediction for GeneMark_model.5815_t
Valid prediction for snap_scaffold_2-snap.751-T1
Valid prediction for GeneMark_model.5802_t
Valid prediction for GeneMark_model.5804_t
Valid prediction for GlimmerHMM_glimmerT_3572-T1
Valid prediction for GeneMark_model.5810_t
Valid prediction for GeneMark_model.5812_t
Valid prediction for snap_scaffold_2-snap.758-T1
Valid prediction for GlimmerHMM_glimmerT_3573-T1
Valid prediction for Augustus_model.g2383.t1
Valid prediction for Augustus_model.g2378.t1
Valid prediction for snap_scaffold_2-snap.760-T1
Valid prediction for GlimmerHMM_glimmerT_3570-T1
Valid prediction for Augustus_model.g2377.t1
Valid prediction for GeneMark_model.5805_t
Valid prediction for GeneMark_model.5817_t
Valid prediction for snap_scaffold_2-snap.748-T1
Valid prediction for GeneMark_model.5821_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.749-T1
Valid prediction for snap_scaffold_2-snap.765-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.753-T1
Valid prediction for snap_scaffold_2-snap.764-T1
Valid prediction for GeneMark_model.5820_t
Valid prediction for GeneMark_model.5809_t
Valid prediction for Augustus_model.g2379.t1
Valid prediction for GeneMark_model.5816_t
Valid prediction for snap_scaffold_2-snap.762-T1
Valid prediction for GlimmerHMM_glimmerT_3576-T1
Valid prediction for GeneMark_model.5811_t
Valid prediction for snap_scaffold_2-snap.752-T1
Valid prediction for GlimmerHMM_glimmerT_3575-T1
Valid prediction for GeneMark_model.5813_t
Valid prediction for GeneMark_model.5806_t
Valid prediction for GeneMark_model.5801_t
Valid prediction for snap_scaffold_2-snap.759-T1
Valid prediction for GeneMark_model.5803_t
Valid prediction for GeneMark_model.5818_t
Valid prediction for Augustus_model.g2382.t1
Valid prediction for GlimmerHMM_glimmerT_3577-T1
Valid prediction for snap_scaffold_2-snap.755-T1
Valid prediction for GeneMark_model.5808_t
Valid prediction for snap_scaffold_2-snap.763-T1
Valid prediction for Augustus_model.g2376.t1
Valid prediction for Augustus_model.g2384.t1
Valid prediction for Augustus_model.g2381.t1
Valid prediction for GeneMark_model.5814_t
Valid prediction for GlimmerHMM_glimmerT_3568-T1
Valid prediction for snap_scaffold_2-snap.750-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5525, rend_intergenic: 3287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11868, rend_intergenic: 10016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17765, rend_intergenic: 11873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22383, rend_intergenic: 20756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31889, rend_intergenic: 23378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35934, rend_intergenic: 32878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38150, rend_intergenic: 36436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65610, rend_intergenic: 40698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 67735
-exon list size: 359


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.2    
4.4    
4.7    
5.0    
5.3    
5.5    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.7    
13.0    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.8    
26.0    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.4    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.8    
62.0    
62.3    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.6    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
74.0    
74.2    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.6    
95.8    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 5525, rend_intergenic: 3287  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11868, rend_intergenic: 10016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17765, rend_intergenic: 11873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22383, rend_intergenic: 20756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31889, rend_intergenic: 23378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 35934, rend_intergenic: 32878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38150, rend_intergenic: 36436  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65610, rend_intergenic: 40698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support