-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_2154004-2506068 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.5505_t Valid prediction for Augustus_model.g2288.t1 Valid prediction for snap_scaffold_2-snap.578-T1 Valid prediction for GeneMark_model.5551_t Valid prediction for GlimmerHMM_glimmerT_3419-T1 Valid prediction for GeneMark_model.5541_t Valid prediction for snap_scaffold_2-snap.579-T1 Valid prediction for Augustus_model.g2285.t1 Valid prediction for snap_scaffold_2-snap.552-T1 Valid prediction for snap_scaffold_2-snap.577-T1 Valid prediction for GeneMark_model.5491_t Valid prediction for GeneMark_model.5537_t Valid prediction for GeneMark_model.5533_t Valid prediction for GeneMark_model.5534_t Valid prediction for GeneMark_model.5504_t Valid prediction for GeneMark_model.5500_t Valid prediction for snap_scaffold_2-snap.548-T1 Valid prediction for Augustus_model.g2278.t1 Valid prediction for GeneMark_model.5571_t Valid prediction for GlimmerHMM_glimmerT_3408-T1 Valid prediction for GeneMark_model.5496_t Valid prediction for GeneMark_model.5503_t Valid prediction for snap_scaffold_2-snap.533-T1 Valid prediction for pasa_asmbl_24267.p1 Valid prediction for GlimmerHMM_glimmerT_3445-T1 Valid prediction for Augustus_model.g2294.t1 Valid prediction for GlimmerHMM_glimmerT_3394-T1 Valid prediction for snap_scaffold_2-snap.564-T1 Sorry, intron length (4) is less than minimum required (10) Couldn't classify 285018, 285467 Sorry, prediction pasa_asmbl_25436.p1 fails validation. (AAA) CG 285018-285467 AA CCA Valid prediction for GeneMark_model.5516_t Valid prediction for GeneMark_model.5549_t Valid prediction for snap_scaffold_2-snap.520-T1 Valid prediction for GlimmerHMM_glimmerT_3391-T1 Valid prediction for snap_scaffold_2-snap.561-T1 Valid prediction for snap_scaffold_2-snap.517-T1 Valid prediction for GeneMark_model.5494_t Valid prediction for GlimmerHMM_glimmerT_3433-T1 Valid prediction for snap_scaffold_2-snap.569-T1 Valid prediction for snap_scaffold_2-snap.546-T1 Valid prediction for snap_scaffold_2-snap.528-T1 Valid prediction for GeneMark_model.5518_t Valid prediction for snap_scaffold_2-snap.539-T1 Valid prediction for GlimmerHMM_glimmerT_3449-T1 Valid prediction for snap_scaffold_2-snap.538-T1 Valid prediction for GlimmerHMM_glimmerT_3410-T1 Valid prediction for snap_scaffold_2-snap.541-T1 Valid prediction for GeneMark_model.5522_t Valid prediction for GeneMark_model.5562_t Valid prediction for GlimmerHMM_glimmerT_3440-T1 Valid prediction for GeneMark_model.5528_t Valid prediction for GlimmerHMM_glimmerT_3426-T1 Valid prediction for GlimmerHMM_glimmerT_3411-T1 Valid prediction for GlimmerHMM_glimmerT_3431-T1 Valid prediction for GlimmerHMM_glimmerT_3442-T1 Valid prediction for Augustus_model.g2297.t1 Valid prediction for Augustus_model.g2273.t1 Valid prediction for GeneMark_model.5514_t Valid prediction for GeneMark_model.5564_t Valid prediction for GeneMark_model.5520_t Valid prediction for GlimmerHMM_glimmerT_3401-T1 Valid prediction for snap_scaffold_2-snap.556-T1 Couldn't classify 212085, 212171 Couldn't classify 212574, 212693 Sorry, prediction pasa_asmbl_24264.p2 fails validation. (GAG) AA 212085-212171 GT AGG (GTT) AG 212337-212483 GT AGG (ATC) AG 212574-212693 AC AGA -recovered pasa_asmbl_24264.p2, internal, 212337, 212483 Valid prediction for snap_scaffold_2-snap.568-T1 Valid prediction for GeneMark_model.5484_t Valid prediction for GlimmerHMM_glimmerT_3417-T1 Valid prediction for GlimmerHMM_glimmerT_3443-T1 Valid prediction for snap_scaffold_2-snap.550-T1 Valid prediction for snap_scaffold_2-snap.543-T1 Valid prediction for GeneMark_model.5530_t Valid prediction for snap_scaffold_2-snap.567-T1 Valid prediction for snap_scaffold_2-snap.514-T1 Valid prediction for snap_scaffold_2-snap.537-T1 Valid prediction for snap_scaffold_2-snap.544-T1 Valid prediction for snap_scaffold_2-snap.530-T1 Valid prediction for snap_scaffold_2-snap.582-T1 Valid prediction for snap_scaffold_2-snap.572-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_3424-T1 Valid prediction for GeneMark_model.5555_t Valid prediction for GeneMark_model.5560_t Valid prediction for GeneMark_model.5511_t Valid prediction for GeneMark_model.5524_t Valid prediction for snap_scaffold_2-snap.511-T1 Valid prediction for snap_scaffold_2-snap.516-T1 Valid prediction for GlimmerHMM_glimmerT_3432-T1 Valid prediction for snap_scaffold_2-snap.525-T1 Valid prediction for GlimmerHMM_glimmerT_3405-T1 Valid prediction for GlimmerHMM_glimmerT_3414-T1 Valid prediction for GlimmerHMM_glimmerT_3392-T1 Couldn't classify 272200, 272252 Couldn't classify 273239, 273425 Sorry, prediction pasa_asmbl_24266.p1 fails validation. (GGA) GA 272200-272252 GT AGG (GTC) AG 272824-272940 GT ATG (CTT) AG 273239-273425 GG AGG -recovered pasa_asmbl_24266.p1, internal, 272824, 272940 Valid prediction for GeneMark_model.5485_t Valid prediction for GeneMark_model.5478_t Valid prediction for snap_scaffold_2-snap.545-T1 Valid prediction for snap_scaffold_2-snap.554-T1 Valid prediction for Augustus_model.g2289.t1 add_exon() Sorry, Augustus_model.g2289.t1 287243-287603-initial-1 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 287931-288097-internal-2 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 288430-288616-internal-1 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 288738-288935-internal-2 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 289276-289354-internal-2 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 289664-289849-internal-3 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 290475-290612-internal-3 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 292950-293261-internal-1 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 293845-293963-internal-1 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 294515-294742-internal-3 is invalid. add_exon() Sorry, Augustus_model.g2289.t1 295574-295652-terminal-2 is invalid. Valid prediction for GeneMark_model.5535_t Valid prediction for GeneMark_model.5566_t Couldn't classify 118316, 118481 Couldn't classify 122190, 122259 Sorry, prediction pasa_asmbl_24262.p1 fails validation. (GCC) TT 118316-118481 GT AGG (GAT) AG 118761-118807 GT AGG (GCA) AG 118954-119121 GT AGG (ATC) AG 120425-120485 GT AGG (TGT) AG 120607-120746 GT CTG (GTG) AG 121942-122051 GT AGG (CTG) AG 122190-122259 GT GGG -recovered pasa_asmbl_24262.p1, internal, 118761, 118807 -recovered pasa_asmbl_24262.p1, internal, 118954, 119121 -recovered pasa_asmbl_24262.p1, internal, 120425, 120485 -recovered pasa_asmbl_24262.p1, internal, 120607, 120746 -recovered pasa_asmbl_24262.p1, internal, 121942, 122051 -recovered pasa_asmbl_24262.p1, internal, 122190, 122259 Valid prediction for GeneMark_model.5482_t Valid prediction for Augustus_model.g2287.t1 Valid prediction for snap_scaffold_2-snap.523-T1 Valid prediction for GlimmerHMM_glimmerT_3436-T1 Valid prediction for GlimmerHMM_glimmerT_3398-T1 Valid prediction for snap_scaffold_2-snap.566-T1 Valid prediction for GeneMark_model.5544_t Valid prediction for GeneMark_model.5546_t Valid prediction for GlimmerHMM_glimmerT_3429-T1 Valid prediction for GeneMark_model.5538_t Valid prediction for GeneMark_model.5477_t Valid prediction for GeneMark_model.5507_t Valid prediction for snap_scaffold_2-snap.575-T1 Valid prediction for GeneMark_model.5498_t Valid prediction for snap_scaffold_2-snap.547-T1 Valid prediction for snap_scaffold_2-snap.557-T1 Valid prediction for GeneMark_model.5526_t Valid prediction for GlimmerHMM_glimmerT_3420-T1 Valid prediction for snap_scaffold_2-snap.509-T1 Valid prediction for GeneMark_model.5493_t Valid prediction for snap_scaffold_2-snap.536-T1 Valid prediction for GlimmerHMM_glimmerT_3421-T1 Valid prediction for snap_scaffold_2-snap.531-T1 Valid prediction for GeneMark_model.5558_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.529-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for CodingQuarry_transcript_28411-T1 Valid prediction for snap_scaffold_2-snap.527-T1 Couldn't classify 190658, 190981 Sorry, prediction pasa_asmbl_22912.p1 fails validation. (CTC) CC 190658-190981 AA GAA Valid prediction for snap_scaffold_2-snap.526-T1 Valid prediction for snap_scaffold_2-snap.532-T1 Valid prediction for GlimmerHMM_glimmerT_3438-T1 Valid prediction for GlimmerHMM_glimmerT_3395-T1 Valid prediction for HiQ_model.g2290.t1 Valid prediction for GlimmerHMM_glimmerT_3403-T1 Valid prediction for snap_scaffold_2-snap.513-T1 Couldn't classify 164928, 165763 Couldn't classify 174497, 174562 Sorry, prediction pasa_asmbl_22916.p1 fails validation. (CCT) AC 164928-165763 GT AGG (GAA) AG 167772-167899 GT AGG (ATC) AG 169149-169264 GT AGG (CTC) AG 169801-169998 GT AGG (ATG) AG 170090-170183 GT GGG (TGA) AG 170903-170953 GT AGG (CCC) AG 171476-171663 GT AGG (TTG) AG 171944-172053 GT AGG (CGA) AG 173498-173567 GT TGG (CCC) AG 173881-173958 GT AGG (ATC) AG 174497-174562 AT GGA -recovered pasa_asmbl_22916.p1, initial, 170090, 170183 add_exon() Sorry, pasa_asmbl_22916.p1 167772-167899-terminal-2 is invalid. -recovered pasa_asmbl_22916.p1, terminal, 167772, 167899 -recovered pasa_asmbl_22916.p1, internal, 167772, 167899 -recovered pasa_asmbl_22916.p1, internal, 169149, 169264 -recovered pasa_asmbl_22916.p1, internal, 169801, 169998 -recovered pasa_asmbl_22916.p1, internal, 170090, 170183 -recovered pasa_asmbl_22916.p1, internal, 170903, 170953 -recovered pasa_asmbl_22916.p1, internal, 171476, 171663 -recovered pasa_asmbl_22916.p1, internal, 171944, 172053 -recovered pasa_asmbl_22916.p1, internal, 173498, 173567 -recovered pasa_asmbl_22916.p1, internal, 173881, 173958 Valid prediction for GeneMark_model.5540_t Valid prediction for GeneMark_model.5539_t Valid prediction for snap_scaffold_2-snap.510-T1 Valid prediction for snap_scaffold_2-snap.559-T1 Valid prediction for GlimmerHMM_glimmerT_3434-T1 Valid prediction for GlimmerHMM_glimmerT_3400-T1 Valid prediction for GeneMark_model.5559_t Valid prediction for GlimmerHMM_glimmerT_3448-T1 Valid prediction for GlimmerHMM_glimmerT_3402-T1 Valid prediction for GeneMark_model.5554_t Valid prediction for snap_scaffold_2-snap.565-T1 Valid prediction for GlimmerHMM_glimmerT_3427-T1 Valid prediction for GeneMark_model.5550_t Valid prediction for GeneMark_model.5557_t Valid prediction for GlimmerHMM_glimmerT_3444-T1 Valid prediction for snap_scaffold_2-snap.542-T1 Valid prediction for snap_scaffold_2-snap.524-T1 Valid prediction for GeneMark_model.5521_t Valid prediction for GeneMark_model.5561_t Valid prediction for snap_scaffold_2-snap.508-T1 Valid prediction for snap_scaffold_2-snap.580-T1 Valid prediction for GeneMark_model.5517_t Valid prediction for snap_scaffold_2-snap.522-T1 Valid prediction for GeneMark_model.5492_t Valid prediction for GlimmerHMM_glimmerT_3422-T1 Valid prediction for GlimmerHMM_glimmerT_3428-T1 Valid prediction for GlimmerHMM_glimmerT_3413-T1 Valid prediction for GeneMark_model.5501_t Valid prediction for GlimmerHMM_glimmerT_3396-T1 Valid prediction for GlimmerHMM_glimmerT_3447-T1 Valid prediction for snap_scaffold_2-snap.581-T1 Valid prediction for GeneMark_model.5532_t Valid prediction for GeneMark_model.5553_t Valid prediction for GlimmerHMM_glimmerT_3393-T1 Valid prediction for snap_scaffold_2-snap.521-T1 Valid prediction for Augustus_model.g2276.t1 Valid prediction for GeneMark_model.5567_t Valid prediction for GeneMark_model.5497_t Valid prediction for Augustus_model.g2284.t1 Valid prediction for snap_scaffold_2-snap.515-T1 Valid prediction for Augustus_model.g2295.t1 Couldn't classify 175429, 175493 Sorry, prediction pasa_asmbl_22914.p1 fails validation. (CTC) TG 175429-175493 GT AGG (TAC) AG 178270-178447 GT AGG (GTT) AG 178960-179001 GT AGG (CTG) AG 179141-179246 GT TGG (ACT) AG 180358-180636 GT GGG (GTC) AG 181425-181511 GT GGG (GAA) AG 181657-181688 AG AGA -recovered pasa_asmbl_22914.p1, terminal, 181657, 181688 -recovered pasa_asmbl_22914.p1, internal, 178270, 178447 -recovered pasa_asmbl_22914.p1, internal, 178960, 179001 -recovered pasa_asmbl_22914.p1, internal, 179141, 179246 -recovered pasa_asmbl_22914.p1, internal, 180358, 180636 -recovered pasa_asmbl_22914.p1, internal, 181425, 181511 Valid prediction for GeneMark_model.5531_t Valid prediction for GeneMark_model.5565_t Valid prediction for GlimmerHMM_glimmerT_3416-T1 Valid prediction for GeneMark_model.5523_t Valid prediction for snap_scaffold_2-snap.560-T1 Valid prediction for GeneMark_model.5527_t Valid prediction for Augustus_model.g2282.t1 Valid prediction for GeneMark_model.5556_t Valid prediction for Augustus_model.g2275.t1 Valid prediction for GeneMark_model.5488_t Valid prediction for GlimmerHMM_glimmerT_3409-T1 Valid prediction for snap_scaffold_2-snap.562-T1 Valid prediction for GlimmerHMM_glimmerT_3437-T1 Valid prediction for snap_scaffold_2-snap.540-T1 Valid prediction for GeneMark_model.5545_t Valid prediction for snap_scaffold_2-snap.519-T1 Valid prediction for snap_scaffold_2-snap.571-T1 Valid prediction for GlimmerHMM_glimmerT_3446-T1 Valid prediction for Augustus_model.g2296.t1 Valid prediction for snap_scaffold_2-snap.574-T1 Valid prediction for GeneMark_model.5502_t Valid prediction for GeneMark_model.5543_t Valid prediction for snap_scaffold_2-snap.534-T1 Valid prediction for Augustus_model.g2292.t1 Valid prediction for Augustus_model.g2279.t1 Valid prediction for GlimmerHMM_glimmerT_3439-T1 Valid prediction for snap_scaffold_2-snap.553-T1 Valid prediction for Augustus_model.g2281.t1 Valid prediction for GlimmerHMM_glimmerT_3441-T1 Valid prediction for GlimmerHMM_glimmerT_3435-T1 Valid prediction for GeneMark_model.5490_t Valid prediction for snap_scaffold_2-snap.512-T1 Valid prediction for GeneMark_model.5542_t Valid prediction for GlimmerHMM_glimmerT_3418-T1 Valid prediction for GeneMark_model.5487_t Valid prediction for snap_scaffold_2-snap.535-T1 Valid prediction for snap_scaffold_2-snap.573-T1 Valid prediction for Augustus_model.g2277.t1 Valid prediction for GeneMark_model.5519_t Valid prediction for GlimmerHMM_glimmerT_3425-T1 Valid prediction for GeneMark_model.5515_t Valid prediction for GlimmerHMM_glimmerT_3404-T1 Valid prediction for GlimmerHMM_glimmerT_3399-T1 Valid prediction for snap_scaffold_2-snap.549-T1 Valid prediction for GeneMark_model.5572_t Valid prediction for snap_scaffold_2-snap.570-T1 Valid prediction for snap_scaffold_2-snap.518-T1 Valid prediction for snap_scaffold_2-snap.555-T1 Valid prediction for Augustus_model.g2280.t1 Valid prediction for GeneMark_model.5475_t Valid prediction for GlimmerHMM_glimmerT_3412-T1 Valid prediction for GlimmerHMM_glimmerT_3407-T1 Valid prediction for GeneMark_model.5481_t Valid prediction for GlimmerHMM_glimmerT_3430-T1 Valid prediction for GeneMark_model.5570_t Valid prediction for snap_scaffold_2-snap.551-T1 Valid prediction for Augustus_model.g2272.t1 Valid prediction for GeneMark_model.5499_t Valid prediction for GeneMark_model.5510_t Valid prediction for CodingQuarry_transcript_28410-T1 Valid prediction for GeneMark_model.5512_t Valid prediction for GeneMark_model.5489_t Valid prediction for GeneMark_model.5486_t Valid prediction for GlimmerHMM_glimmerT_3415-T1 Valid prediction for GeneMark_model.5479_t Valid prediction for GeneMark_model.5547_t Valid prediction for pasa_asmbl_22919.p1 Valid prediction for GeneMark_model.5476_t Valid prediction for GeneMark_model.5563_t Valid prediction for GeneMark_model.5552_t Valid prediction for Augustus_model.g2283.t1 Valid prediction for Augustus_model.g2293.t1 Valid prediction for GeneMark_model.5529_t Valid prediction for GeneMark_model.5568_t Valid prediction for Augustus_model.g2274.t1 Valid prediction for GeneMark_model.5513_t Valid prediction for snap_scaffold_2-snap.563-T1 Valid prediction for GeneMark_model.5483_t Valid prediction for GlimmerHMM_glimmerT_3406-T1 Valid prediction for GeneMark_model.5480_t Valid prediction for GlimmerHMM_glimmerT_3423-T1 Valid prediction for GeneMark_model.5525_t Valid prediction for snap_scaffold_2-snap.576-T1 Valid prediction for Augustus_model.g2291.t1 Valid prediction for snap_scaffold_2-snap.558-T1 Valid prediction for GeneMark_model.5569_t Valid prediction for GeneMark_model.5536_t Valid prediction for GeneMark_model.5506_t Valid prediction for Augustus_model.g2286.t1 Valid prediction for GlimmerHMM_glimmerT_3397-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 259871, rend_intergenic: 259868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11301, rend_intergenic: 3422 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18119, rend_intergenic: 13279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28594, rend_intergenic: 19477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33031, rend_intergenic: 28596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38072, rend_intergenic: 37578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40702, rend_intergenic: 38356 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50132, rend_intergenic: 46227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50442, rend_intergenic: 50248 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55604, rend_intergenic: 51182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78272, rend_intergenic: 56818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87639, rend_intergenic: 80447 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98512, rend_intergenic: 89366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109145, rend_intergenic: 104877 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114135, rend_intergenic: 110048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159514, rend_intergenic: 130490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167092, rend_intergenic: 159630 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171641, rend_intergenic: 170538 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202760, rend_intergenic: 171641 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210419, rend_intergenic: 203585 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215075, rend_intergenic: 211631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220621, rend_intergenic: 217314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224235, rend_intergenic: 221841 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230917, rend_intergenic: 224244 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236823, rend_intergenic: 231068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249881, rend_intergenic: 237740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252136, rend_intergenic: 250314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 269791, rend_intergenic: 252212 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283083, rend_intergenic: 278131 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310053, rend_intergenic: 306013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 313046, rend_intergenic: 311087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 331274, rend_intergenic: 313109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 335919, rend_intergenic: 331284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 344727, rend_intergenic: 335928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 352065 -exon list size: 1629 building trellis 0.1 0.1 0.2 0.2 0.3 0.4 0.4 0.5 0.6 0.6 0.7 0.7 0.8 0.9 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.3 1.4 1.5 1.5 1.6 1.7 1.7 1.8 1.8 1.9 2.0 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.6 2.7 2.8 2.8 2.9 2.9 3.0 3.1 3.1 3.2 3.2 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.7 3.8 3.9 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.3 5.4 5.5 5.5 5.6 5.6 5.7 5.8 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.2 7.3 7.4 7.4 7.5 7.5 7.6 7.7 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.6 8.7 8.8 8.8 8.9 9.0 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.4 9.5 9.6 9.6 9.7 9.7 9.8 9.9 9.9 10.0 10.1 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.5 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.0 11.1 11.2 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.6 11.7 11.8 11.8 11.9 12.0 12.0 12.1 12.1 12.2 12.3 12.3 12.4 12.4 12.5 12.6 12.6 12.7 12.8 12.8 12.9 12.9 13.0 13.1 13.1 13.2 13.2 13.3 13.4 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.3 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.8 14.9 15.0 15.0 15.1 15.1 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.6 15.7 15.8 15.8 15.9 15.9 16.0 16.1 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.7 16.8 16.9 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.4 17.4 17.5 17.5 17.6 17.7 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.6 18.7 18.8 18.8 18.9 18.9 19.0 19.1 19.1 19.2 19.3 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.7 19.8 19.9 19.9 20.0 20.0 20.1 20.2 20.2 20.3 20.4 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.8 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.3 21.4 21.5 21.5 21.6 21.6 21.7 21.8 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.3 22.3 22.4 22.4 22.5 22.6 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.1 23.1 23.2 23.2 23.3 23.4 23.4 23.5 23.5 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.0 24.1 24.2 24.2 24.3 24.3 24.4 24.5 24.5 24.6 24.6 24.7 24.8 24.8 24.9 25.0 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.8 25.8 25.9 25.9 26.0 26.1 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.5 26.6 26.7 26.7 26.8 26.9 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.1 28.2 28.3 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.0 30.1 30.2 30.2 30.3 30.3 30.4 30.5 30.5 30.6 30.7 30.7 30.8 30.8 30.9 31.0 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.6 31.7 31.8 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.3 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.4 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.2 34.2 34.3 34.3 34.4 34.5 34.5 34.6 34.6 34.7 34.8 34.8 34.9 34.9 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.7 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.5 36.6 36.7 36.7 36.8 36.8 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.3 37.4 37.5 37.5 37.6 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.1 38.2 38.3 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.7 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.5 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.0 40.1 40.2 40.2 40.3 40.3 40.4 40.5 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.1 41.2 41.3 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.8 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.2 42.3 42.4 42.4 42.5 42.6 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.0 43.1 43.2 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.7 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.6 44.7 44.8 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.0 46.1 46.2 46.2 46.3 46.4 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.1 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.6 47.7 47.8 47.8 47.9 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.4 48.5 48.6 48.6 48.7 48.7 48.8 48.9 48.9 49.0 49.0 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.6 50.7 50.8 50.8 50.9 51.0 51.0 51.1 51.1 51.2 51.3 51.3 51.4 51.4 51.5 51.6 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.9 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.6 53.7 53.8 53.8 53.9 54.0 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.8 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.2 55.3 55.4 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.3 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.8 56.9 57.0 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.4 57.5 57.6 57.6 57.7 57.8 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.7 58.8 58.9 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.5 59.6 59.7 59.7 59.8 59.8 59.9 60.0 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.5 60.5 60.6 60.6 60.7 60.8 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.3 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.7 61.8 61.9 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.5 62.6 62.7 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.2 63.2 63.3 63.3 63.4 63.5 63.5 63.6 63.6 63.7 63.8 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.3 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.1 65.1 65.2 65.2 65.3 65.4 65.4 65.5 65.5 65.6 65.7 65.7 65.8 65.8 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.6 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.7 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.2 68.3 68.4 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.0 69.1 69.2 69.2 69.3 69.3 69.4 69.5 69.5 69.6 69.7 69.7 69.8 69.8 69.9 70.0 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.7 71.8 71.9 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.1 73.2 73.3 73.3 73.4 73.5 73.5 73.6 73.6 73.7 73.8 73.8 73.9 73.9 74.0 74.1 74.1 74.2 74.2 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.0 75.1 75.2 75.2 75.3 75.4 75.4 75.5 75.5 75.6 75.7 75.7 75.8 75.8 75.9 76.0 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.5 76.5 76.6 76.6 76.7 76.8 76.8 76.9 76.9 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.4 77.5 77.6 77.6 77.7 77.7 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.2 78.3 78.4 78.4 78.5 78.5 78.6 78.7 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.2 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.6 79.7 79.8 79.8 79.9 80.0 80.0 80.1 80.1 80.2 80.3 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.7 80.8 80.9 80.9 81.0 81.1 81.1 81.2 81.2 81.3 81.4 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.3 82.4 82.5 82.5 82.6 82.6 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.1 83.2 83.3 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.8 83.8 83.9 83.9 84.0 84.1 84.1 84.2 84.2 84.3 84.4 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.9 84.9 85.0 85.0 85.1 85.2 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.7 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.6 86.7 86.8 86.8 86.9 86.9 87.0 87.1 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.6 87.6 87.7 87.7 87.8 87.9 87.9 88.0 88.0 88.1 88.2 88.2 88.3 88.4 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.8 88.9 89.0 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.5 89.5 89.6 89.6 89.7 89.8 89.8 89.9 89.9 90.0 90.1 90.1 90.2 90.3 90.3 90.4 90.4 90.5 90.6 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.0 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.3 92.4 92.5 92.5 92.6 92.6 92.7 92.8 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.5 94.6 94.7 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.1 96.2 96.3 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.8 96.8 96.9 96.9 97.0 97.1 97.1 97.2 97.2 97.3 97.4 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.0 98.1 98.2 98.2 98.3 98.3 98.4 98.5 98.5 98.6 98.7 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.1 99.2 99.3 99.3 99.4 99.4 99.5 99.6 99.6 99.7 99.8 99.8 99.9 99.9 -found 77 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 259871, rend_intergenic: 259868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11301, rend_intergenic: 3422 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18119, rend_intergenic: 13279 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28594, rend_intergenic: 19477 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33031, rend_intergenic: 28596 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38072, rend_intergenic: 37578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40702, rend_intergenic: 38356 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50132, rend_intergenic: 46227 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50442, rend_intergenic: 50248 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55604, rend_intergenic: 51182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78272, rend_intergenic: 56818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 87639, rend_intergenic: 80447 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98512, rend_intergenic: 89366 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 109145, rend_intergenic: 104877 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114135, rend_intergenic: 110048 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 159514, rend_intergenic: 130490 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 167092, rend_intergenic: 159630 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171641, rend_intergenic: 170538 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202760, rend_intergenic: 171641 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210419, rend_intergenic: 203585 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215075, rend_intergenic: 211631 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220621, rend_intergenic: 217314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 224235, rend_intergenic: 221841 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230917, rend_intergenic: 224244 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236823, rend_intergenic: 231068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249881, rend_intergenic: 237740 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252136, rend_intergenic: 250314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 269791, rend_intergenic: 252212 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283083, rend_intergenic: 278131 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310053, rend_intergenic: 306013 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 313046, rend_intergenic: 311087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 331274, rend_intergenic: 313109 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 335919, rend_intergenic: 331284 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 344727, rend_intergenic: 335928 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 31 predictions persist after filtering for low support