-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_20123182-20285202

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.9637_t
Valid prediction for GeneMark_model.9607_t
Valid prediction for snap_scaffold_2-snap.4003-T1
Valid prediction for snap_scaffold_2-snap.3995-T1
Valid prediction for GlimmerHMM_glimmerT_5883-T1
Valid prediction for GlimmerHMM_glimmerT_5878-T1
Valid prediction for snap_scaffold_2-snap.4006-T1
Valid prediction for GeneMark_model.9640_t
Valid prediction for snap_scaffold_2-snap.3997-T1
Valid prediction for GlimmerHMM_glimmerT_5869-T1
Valid prediction for snap_scaffold_2-snap.3974-T1
Valid prediction for snap_scaffold_2-snap.3983-T1
Couldn't classify 84303, 84438
Couldn't classify 84589, 84866
Sorry, prediction pasa_asmbl_25339.p1 fails validation.
(CCC)	 TC	84303-84438	GT	AGG
(GCC)	 AG	84589-84866	AC	CCA
Couldn't classify 108144, 108194
Couldn't classify 109425, 109687
Sorry, prediction pasa_asmbl_25343.p1 fails validation.
(AGA)	 TC	108144-108194	GT	AGG
(AAC)	 AG	108340-108397	GT	AGG
(GTC)	 AG	108549-108640	GT	AGG
(GGT)	 AG	108867-109007	GT	AGG
(GGG)	 AG	109118-109256	GT	GGG
(AAA)	 AG	109425-109687	GG	CAG
-recovered pasa_asmbl_25343.p1, internal, 108340, 108397
-recovered pasa_asmbl_25343.p1, internal, 108549, 108640
-recovered pasa_asmbl_25343.p1, internal, 108867, 109007
-recovered pasa_asmbl_25343.p1, internal, 109118, 109256
Valid prediction for snap_scaffold_2-snap.3992-T1
Valid prediction for GeneMark_model.9600_t
Valid prediction for GeneMark_model.9616_t
Valid prediction for GlimmerHMM_glimmerT_5895-T1
Valid prediction for GlimmerHMM_glimmerT_5884-T1
Valid prediction for GlimmerHMM_glimmerT_5891-T1
Valid prediction for snap_scaffold_2-snap.4009-T1
Valid prediction for GeneMark_model.9629_t
Valid prediction for GeneMark_model.9610_t
Valid prediction for snap_scaffold_2-snap.3979-T1
Valid prediction for snap_scaffold_2-snap.3994-T1
Valid prediction for GlimmerHMM_glimmerT_5875-T1
Valid prediction for GeneMark_model.9634_t
Valid prediction for GlimmerHMM_glimmerT_5877-T1
Valid prediction for snap_scaffold_2-snap.3966-T1
Valid prediction for snap_scaffold_2-snap.3965-T1
Valid prediction for GeneMark_model.9602_t
Valid prediction for snap_scaffold_2-snap.3970-T1
Valid prediction for snap_scaffold_2-snap.3982-T1
Couldn't classify 84993, 85925
Sorry, prediction pasa_asmbl_25340.p1 fails validation.
(TCT)	 TA	84993-85925	GT	AGG
(GTG)	 AG	86172-86246	GT	AGG
(GGG)	 AG	86359-86463	GT	AGG
(GTG)	 AG	86583-86883	GT	AGG
(TGA)	 AG	86957-87134	GT	AAG
(ACA)	 AG	87415-87611	GT	AGG
(AAG)	 AG	87729-87878	GT	GGG
(GTT)	 AG	87977-88182	GT	AGG
(ATG)	 AG	88741-89106	CC	AGC
-recovered pasa_asmbl_25340.p1, terminal, 88741, 89106
-recovered pasa_asmbl_25340.p1, internal, 86172, 86246
-recovered pasa_asmbl_25340.p1, internal, 86359, 86463
-recovered pasa_asmbl_25340.p1, internal, 86583, 86883
-recovered pasa_asmbl_25340.p1, internal, 86957, 87134
-recovered pasa_asmbl_25340.p1, internal, 87415, 87611
-recovered pasa_asmbl_25340.p1, internal, 87729, 87878
-recovered pasa_asmbl_25340.p1, internal, 87977, 88182
Valid prediction for snap_scaffold_2-snap.3975-T1
Couldn't classify 61777, 62304
Sorry, prediction pasa_asmbl_25337.p1 fails validation.
(CTC)	 AC	61777-62304	TG	CCT
Couldn't classify 74668, 74754
Sorry, prediction pasa_asmbl_25338.p1 fails validation.
(ATG)	 TC	71803-71946	GT	GCG
(GGA)	 AG	73765-73853	GT	AGG
(GTA)	 AG	73996-74215	GT	TGG
(GTG)	 AG	74376-74477	GT	AGG
(GTC)	 AG	74668-74754	CA	CCC
-recovered pasa_asmbl_25338.p1, initial, 71803, 71946
-recovered pasa_asmbl_25338.p1, internal, 73765, 73853
-recovered pasa_asmbl_25338.p1, internal, 73996, 74215
-recovered pasa_asmbl_25338.p1, internal, 74376, 74477
Valid prediction for snap_scaffold_2-snap.3973-T1
Valid prediction for GeneMark_model.9626_t
Valid prediction for snap_scaffold_2-snap.3977-T1
Valid prediction for GeneMark_model.9638_t
Valid prediction for GlimmerHMM_glimmerT_5865-T1
Valid prediction for GeneMark_model.9624_t
Valid prediction for GlimmerHMM_glimmerT_5870-T1
Valid prediction for GlimmerHMM_glimmerT_5876-T1
Valid prediction for GlimmerHMM_glimmerT_5894-T1
Couldn't classify 15541, 15615
Sorry, prediction pasa_asmbl_25335.p1 fails validation.
(TGG)	 CC	15541-15615	GT	TGG
(GCA)	 AG	15946-16021	GT	AGG
(GTA)	 AG	16160-16327	GT	TGG
(ACA)	 AG	16528-16571	CG	AGC
-recovered pasa_asmbl_25335.p1, terminal, 16528, 16571
-recovered pasa_asmbl_25335.p1, internal, 15946, 16021
-recovered pasa_asmbl_25335.p1, internal, 16160, 16327
Valid prediction for GlimmerHMM_glimmerT_5880-T1
Valid prediction for GlimmerHMM_glimmerT_5887-T1
Valid prediction for snap_scaffold_2-snap.4000-T1
Valid prediction for CodingQuarry_transcript_28831-T1
Valid prediction for snap_scaffold_2-snap.3978-T1
Valid prediction for GeneMark_model.9621_t
Valid prediction for GlimmerHMM_glimmerT_5892-T1
Valid prediction for GlimmerHMM_glimmerT_5886-T1
Valid prediction for snap_scaffold_2-snap.3981-T1
Valid prediction for snap_scaffold_2-snap.3989-T1
Valid prediction for GeneMark_model.9647_t
Valid prediction for snap_scaffold_2-snap.3999-T1
Valid prediction for GlimmerHMM_glimmerT_5898-T1
Valid prediction for snap_scaffold_2-snap.4002-T1
Valid prediction for GlimmerHMM_glimmerT_5879-T1
Valid prediction for GeneMark_model.9605_t
Valid prediction for GeneMark_model.9644_t
Couldn't classify 101228, 101288
Couldn't classify 102664, 102734
Sorry, prediction pasa_asmbl_25384.p1 fails validation.
(CAG)	 CT	101228-101288	GT	AGG
(GTC)	 AG	101440-101531	GT	AGG
(GGT)	 AG	101757-101897	GT	AGG
(GGG)	 AG	102008-102146	GT	GGG
(AAA)	 AG	102315-102578	GT	AGG
(GTA)	 AG	102664-102734	TC	ACT
-recovered pasa_asmbl_25384.p1, internal, 101440, 101531
-recovered pasa_asmbl_25384.p1, internal, 101757, 101897
-recovered pasa_asmbl_25384.p1, internal, 102008, 102146
-recovered pasa_asmbl_25384.p1, internal, 102315, 102578
Valid prediction for GeneMark_model.9614_t
Couldn't classify 136802, 136894
Sorry, prediction pasa_asmbl_25348.p1 fails validation.
(ATG)	 TA	135806-136223	GT	CGG
(ATC)	 AG	136506-136615	GT	AGG
(GCT)	 AG	136802-136894	GT	GGG
-recovered pasa_asmbl_25348.p1, initial, 135806, 136223
-recovered pasa_asmbl_25348.p1, internal, 136506, 136615
-recovered pasa_asmbl_25348.p1, internal, 136802, 136894
Valid prediction for snap_scaffold_2-snap.4008-T1
Valid prediction for GeneMark_model.9646_t
Valid prediction for GeneMark_model.9642_t
Valid prediction for GeneMark_model.9608_t
Valid prediction for GlimmerHMM_glimmerT_5890-T1
Valid prediction for GlimmerHMM_glimmerT_5901-T1
Valid prediction for GeneMark_model.9596_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_5899-T1
Valid prediction for GlimmerHMM_glimmerT_5867-T1
Valid prediction for snap_scaffold_2-snap.3967-T1
Valid prediction for GeneMark_model.9597_t
Valid prediction for GeneMark_model.9613_t
Valid prediction for GlimmerHMM_glimmerT_5863-T1
Valid prediction for GlimmerHMM_glimmerT_5881-T1
Valid prediction for snap_scaffold_2-snap.3987-T1
Valid prediction for CodingQuarry_transcript_28829-T1
Valid prediction for GeneMark_model.9645_t
Valid prediction for pasa_asmbl_23900.p1
Valid prediction for snap_scaffold_2-snap.3988-T1
Valid prediction for GeneMark_model.9641_t
Valid prediction for GeneMark_model.9632_t
Valid prediction for snap_scaffold_2-snap.3976-T1
Valid prediction for GlimmerHMM_glimmerT_5900-T1
Valid prediction for GlimmerHMM_glimmerT_5871-T1
Valid prediction for snap_scaffold_2-snap.4007-T1
Valid prediction for snap_scaffold_2-snap.3998-T1
Valid prediction for GeneMark_model.9625_t
Valid prediction for GeneMark_model.9622_t
Valid prediction for snap_scaffold_2-snap.3971-T1
Valid prediction for snap_scaffold_2-snap.3990-T1
Valid prediction for GeneMark_model.9609_t
Valid prediction for GeneMark_model.9639_t
Valid prediction for GeneMark_model.9630_t
Valid prediction for GlimmerHMM_glimmerT_5866-T1
Valid prediction for GlimmerHMM_glimmerT_5889-T1
Valid prediction for GlimmerHMM_glimmerT_5893-T1
Valid prediction for snap_scaffold_2-snap.3996-T1
Valid prediction for GeneMark_model.9599_t
Valid prediction for GlimmerHMM_glimmerT_5888-T1
Valid prediction for GeneMark_model.9617_t
Valid prediction for GlimmerHMM_glimmerT_5872-T1
Valid prediction for GlimmerHMM_glimmerT_5864-T1
Valid prediction for pasa_asmbl_24058.p1
Valid prediction for GeneMark_model.9598_t
Valid prediction for snap_scaffold_2-snap.4004-T1
Valid prediction for GlimmerHMM_glimmerT_5882-T1
Valid prediction for GeneMark_model.9623_t
Valid prediction for GeneMark_model.9620_t
Valid prediction for GlimmerHMM_glimmerT_5896-T1
Valid prediction for snap_scaffold_2-snap.3993-T1
Valid prediction for GeneMark_model.9604_t
Valid prediction for snap_scaffold_2-snap.3991-T1
Valid prediction for CodingQuarry_transcript_28830-T1
Valid prediction for snap_scaffold_2-snap.3980-T1
Valid prediction for GeneMark_model.9619_t
Valid prediction for GlimmerHMM_glimmerT_5868-T1
Valid prediction for snap_scaffold_2-snap.3969-T1
Valid prediction for GeneMark_model.9611_t
Valid prediction for snap_scaffold_2-snap.4010-T1
Valid prediction for snap_scaffold_2-snap.3972-T1
Valid prediction for GeneMark_model.9606_t
Valid prediction for snap_scaffold_2-snap.4005-T1
Valid prediction for GlimmerHMM_glimmerT_5862-T1
Valid prediction for GeneMark_model.9615_t
Valid prediction for GlimmerHMM_glimmerT_5873-T1
Couldn't classify 111598, 111750
Sorry, prediction pasa_asmbl_23904.p1 fails validation.
(GAT)	 AG	111598-111750	GT	AGG
(ATG)	 AG	112706-112873	GT	AGG
(GTG)	 AG	113273-113440	GT	AGG
(ATT)	 AG	113729-113866	GT	AGG
(GAG)	 AG	114409-114549	GT	AGG
(ACT)	 AG	114999-115139	GT	GGG
(GCA)	 AG	115875-116068	GT	AGG
(GCA)	 AG	116588-116723	GT	AGG
(GAG)	 AG	116895-117026	GT	AGG
(ATG)	 AG	117718-117878	GT	AAG
(ACA)	 AG	117952-118099	GT	AGG
(ACC)	 AG	118273-118368	GT	AGG
(ATG)	 AG	119505-119690	GT	AGG
(TTG)	 AG	120064-120201	CA	GAC
-recovered pasa_asmbl_23904.p1, initial, 112706, 112873
-recovered pasa_asmbl_23904.p1, initial, 117718, 117878
-recovered pasa_asmbl_23904.p1, initial, 119505, 119690
-recovered pasa_asmbl_23904.p1, terminal, 120064, 120201
-recovered pasa_asmbl_23904.p1, internal, 111598, 111750
-recovered pasa_asmbl_23904.p1, internal, 112706, 112873
-recovered pasa_asmbl_23904.p1, internal, 113273, 113440
-recovered pasa_asmbl_23904.p1, internal, 113729, 113866
-recovered pasa_asmbl_23904.p1, internal, 114409, 114549
-recovered pasa_asmbl_23904.p1, internal, 114999, 115139
-recovered pasa_asmbl_23904.p1, internal, 115875, 116068
-recovered pasa_asmbl_23904.p1, internal, 116588, 116723
-recovered pasa_asmbl_23904.p1, internal, 116895, 117026
-recovered pasa_asmbl_23904.p1, internal, 117718, 117878
-recovered pasa_asmbl_23904.p1, internal, 117952, 118099
-recovered pasa_asmbl_23904.p1, internal, 118273, 118368
-recovered pasa_asmbl_23904.p1, internal, 119505, 119690
Valid prediction for GeneMark_model.9635_t
Valid prediction for snap_scaffold_2-snap.3985-T1
Valid prediction for snap_scaffold_2-snap.3986-T1
Valid prediction for snap_scaffold_2-snap.3968-T1
Valid prediction for GeneMark_model.9601_t
Valid prediction for GeneMark_model.9603_t
Couldn't classify 44066, 44170
Sorry, prediction pasa_asmbl_23906.p1 fails validation.
(ATG)	 AG	41347-41562	GT	AGG
(GTG)	 AG	43311-43448	GT	AAG
(CGC)	 AG	44066-44170	GT	CCG
-recovered pasa_asmbl_23906.p1, initial, 41347, 41562
-recovered pasa_asmbl_23906.p1, internal, 41347, 41562
-recovered pasa_asmbl_23906.p1, internal, 43311, 43448
-recovered pasa_asmbl_23906.p1, internal, 44066, 44170
Valid prediction for snap_scaffold_2-snap.4001-T1
Valid prediction for GlimmerHMM_glimmerT_5874-T1
Valid prediction for GlimmerHMM_glimmerT_5861-T1
Valid prediction for snap_scaffold_2-snap.3984-T1
Valid prediction for GlimmerHMM_glimmerT_5885-T1
Valid prediction for GlimmerHMM_glimmerT_5897-T1
Valid prediction for GeneMark_model.9643_t
Valid prediction for GeneMark_model.9627_t
Valid prediction for GeneMark_model.9595_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 102908, rend_intergenic: 102905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11480, rend_intergenic: 8468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20533, rend_intergenic: 17692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29342, rend_intergenic: 20633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36099, rend_intergenic: 30198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42647, rend_intergenic: 41821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54519, rend_intergenic: 43373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89106, rend_intergenic: 68340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90547, rend_intergenic: 89203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92535, rend_intergenic: 92336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99260, rend_intergenic: 97161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103331, rend_intergenic: 99647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116121, rend_intergenic: 112286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116757, rend_intergenic: 116434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122166, rend_intergenic: 116912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132782, rend_intergenic: 128334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140530, rend_intergenic: 136037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144804, rend_intergenic: 141579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152159, rend_intergenic: 145151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 162021
-exon list size: 754


building trellis

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42.3    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.3    
43.4    
43.5    
43.7    
43.8    
43.9    
44.0    
44.2    
44.3    
44.4    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.4    
47.5    
47.6    
47.8    
47.9    
48.0    
48.1    
48.3    
48.4    
48.5    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.5    
51.6    
51.7    
51.9    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.6    
55.7    
55.8    
56.0    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.3    
66.4    
66.5    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.5    
67.6    
67.7    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.4    
79.5    
79.6    
79.8    
79.9    
80.0    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.1    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.1    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 46 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 102908, rend_intergenic: 102905  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11480, rend_intergenic: 8468  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20533, rend_intergenic: 17692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29342, rend_intergenic: 20633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36099, rend_intergenic: 30198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42647, rend_intergenic: 41821  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54519, rend_intergenic: 43373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89106, rend_intergenic: 68340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90547, rend_intergenic: 89203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92535, rend_intergenic: 92336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99260, rend_intergenic: 97161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103331, rend_intergenic: 99647  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116121, rend_intergenic: 112286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116757, rend_intergenic: 116434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122166, rend_intergenic: 116912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132782, rend_intergenic: 128334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140530, rend_intergenic: 136037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144804, rend_intergenic: 141579  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152159, rend_intergenic: 145151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support