-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_18349328-18564360 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.9163_t Valid prediction for snap_scaffold_2-snap.3612-T1 Valid prediction for snap_scaffold_2-snap.3614-T1 Valid prediction for snap_scaffold_2-snap.3616-T1 Valid prediction for GeneMark_model.9178_t Valid prediction for GeneMark_model.9140_t Valid prediction for GeneMark_model.9183_t Valid prediction for GeneMark_model.9197_t Valid prediction for GlimmerHMM_glimmerT_5662-T1 Valid prediction for snap_scaffold_2-snap.3650-T1 Valid prediction for snap_scaffold_2-snap.3652-T1 Valid prediction for GeneMark_model.9187_t Valid prediction for snap_scaffold_2-snap.3626-T1 Valid prediction for GeneMark_model.9138_t Valid prediction for GeneMark_model.9145_t Valid prediction for GlimmerHMM_glimmerT_5650-T1 Valid prediction for snap_scaffold_2-snap.3645-T1 Valid prediction for GeneMark_model.9165_t Valid prediction for GeneMark_model.9157_t Valid prediction for snap_scaffold_2-snap.3639-T1 Valid prediction for GeneMark_model.9151_t Valid prediction for snap_scaffold_2-snap.3647-T1 Valid prediction for snap_scaffold_2-snap.3610-T1 Valid prediction for GlimmerHMM_glimmerT_5649-T1 Valid prediction for snap_scaffold_2-snap.3633-T1 Valid prediction for GeneMark_model.9174_t Valid prediction for GeneMark_model.9142_t Valid prediction for snap_scaffold_2-snap.3624-T1 Valid prediction for GeneMark_model.9168_t Valid prediction for snap_scaffold_2-snap.3605-T1 Valid prediction for GeneMark_model.9146_t Valid prediction for GeneMark_model.9155_t Valid prediction for GeneMark_model.9185_t Valid prediction for GeneMark_model.9153_t Valid prediction for snap_scaffold_2-snap.3622-T1 Valid prediction for Augustus_model.g3820.t1 Valid prediction for GeneMark_model.9195_t Valid prediction for snap_scaffold_2-snap.3637-T1 Valid prediction for GeneMark_model.9144_t Valid prediction for snap_scaffold_2-snap.3629-T1 Couldn't classify 208760, 209860 Sorry, prediction pasa_asmbl_23926.p1 fails validation. (GTC) GA 208760-209860 AA CAA Valid prediction for GeneMark_model.9161_t Valid prediction for GeneMark_model.9199_t Valid prediction for GeneMark_model.9132_t Valid prediction for GlimmerHMM_glimmerT_5664-T1 Valid prediction for GeneMark_model.9198_t Valid prediction for snap_scaffold_2-snap.3642-T1 Valid prediction for snap_scaffold_2-snap.3609-T1 Valid prediction for GeneMark_model.9171_t Valid prediction for GeneMark_model.9180_t Valid prediction for Augustus_model.g3817.t1 Valid prediction for GeneMark_model.9136_t Valid prediction for snap_scaffold_2-snap.3641-T1 Valid prediction for GeneMark_model.9133_t Valid prediction for snap_scaffold_2-snap.3635-T1 Valid prediction for GeneMark_model.9159_t Valid prediction for GeneMark_model.9176_t Valid prediction for GlimmerHMM_glimmerT_5663-T1 Valid prediction for snap_scaffold_2-snap.3621-T1 Valid prediction for snap_scaffold_2-snap.3615-T1 Valid prediction for GeneMark_model.9148_t Valid prediction for snap_scaffold_2-snap.3648-T1 Valid prediction for GeneMark_model.9181_t Valid prediction for snap_scaffold_2-snap.3623-T1 Valid prediction for GlimmerHMM_glimmerT_5656-T1 Valid prediction for GeneMark_model.9134_t Valid prediction for GeneMark_model.9190_t Valid prediction for snap_scaffold_2-snap.3628-T1 Valid prediction for Augustus_model.g3821.t1 Valid prediction for Augustus_model.g3829.t1 Valid prediction for snap_scaffold_2-snap.3631-T1 Valid prediction for snap_scaffold_2-snap.3607-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.3653-T1 Valid prediction for GeneMark_model.9194_t Valid prediction for GeneMark_model.9141_t Couldn't classify 128772, 129185 Sorry, prediction pasa_asmbl_23801.p1 fails validation. (AAA) CC 128772-129185 CA GAC Valid prediction for snap_scaffold_2-snap.3611-T1 Valid prediction for GeneMark_model.9189_t Valid prediction for GeneMark_model.9184_t Valid prediction for GeneMark_model.9192_t Valid prediction for snap_scaffold_2-snap.3608-T1 Valid prediction for GeneMark_model.9137_t Valid prediction for snap_scaffold_2-snap.3627-T1 Valid prediction for snap_scaffold_2-snap.3632-T1 Valid prediction for GeneMark_model.9188_t Valid prediction for GlimmerHMM_glimmerT_5667-T1 Valid prediction for GeneMark_model.9179_t Couldn't classify 29059, 29086 Couldn't classify 31885, 32070 Sorry, prediction pasa_asmbl_23805.p1 fails validation. (AGC) AG 29059-29086 GT GGG (GGA) AG 30657-30797 GT AGG (CTC) AG 31351-31514 GT CGG (ATC) AG 31885-32070 GG AGG -recovered pasa_asmbl_23805.p1, internal, 29059, 29086 -recovered pasa_asmbl_23805.p1, internal, 30657, 30797 -recovered pasa_asmbl_23805.p1, internal, 31351, 31514 Valid prediction for snap_scaffold_2-snap.3638-T1 Couldn't classify 140570, 140624 Couldn't classify 150088, 150110 Sorry, prediction pasa_asmbl_23798.p1 fails validation. (TTC) CG 140570-140624 GT AGG (AGC) AG 142782-142906 GT AGG (GTA) AG 145232-145623 GT AGG (TTG) AG 146422-146478 GT AGG (TAT) AG 147559-147618 GT AGG (TTG) AG 148064-148247 GT AGG (AGG) AG 148727-148829 GT CGG (TAA) AG 150088-150110 AG GGA -recovered pasa_asmbl_23798.p1, internal, 142782, 142906 -recovered pasa_asmbl_23798.p1, internal, 145232, 145623 -recovered pasa_asmbl_23798.p1, internal, 146422, 146478 -recovered pasa_asmbl_23798.p1, internal, 147559, 147618 -recovered pasa_asmbl_23798.p1, internal, 148064, 148247 -recovered pasa_asmbl_23798.p1, internal, 148727, 148829 Valid prediction for snap_scaffold_2-snap.3649-T1 Valid prediction for snap_scaffold_2-snap.3644-T1 Valid prediction for Augustus_model.g3819.t1 Valid prediction for snap_scaffold_2-snap.3646-T1 Valid prediction for GeneMark_model.9160_t Valid prediction for GeneMark_model.9169_t Valid prediction for GlimmerHMM_glimmerT_5660-T1 Valid prediction for GeneMark_model.9191_t Valid prediction for snap_scaffold_2-snap.3606-T1 Valid prediction for snap_scaffold_2-snap.3618-T1 Valid prediction for Augustus_model.g3827.t1 Valid prediction for GeneMark_model.9186_t Valid prediction for GeneMark_model.9196_t Valid prediction for snap_scaffold_2-snap.3636-T1 Valid prediction for snap_scaffold_2-snap.3613-T1 Couldn't classify 130236, 130809 Couldn't classify 132207, 132244 Sorry, prediction pasa_asmbl_23799.p1 fails validation. (TCG) GC 130236-130809 GT AGG (ACT) AG 132207-132244 GC AGG -recovered pasa_asmbl_23799.p1, internal, 132207, 132244 Valid prediction for GlimmerHMM_glimmerT_5668-T1 Valid prediction for GeneMark_model.9158_t Valid prediction for GeneMark_model.9154_t Valid prediction for CodingQuarry_transcript_28791-T1 Valid prediction for GeneMark_model.9173_t Valid prediction for GeneMark_model.9162_t Couldn't classify 22008, 22082 Sorry, prediction pasa_asmbl_23809.p1 fails validation. (GAT) AC 22008-22082 GT CTG (GGT) AG 22297-22431 GT GGG (GTG) AG 22953-23075 GT GTG (GAG) AG 23419-23582 GT AGG (CGC) AG 23847-23982 GT AGG (TGC) AG 24563-24683 GT AGG (ATA) AG 25250-25272 AG AAA -recovered pasa_asmbl_23809.p1, terminal, 25250, 25272 -recovered pasa_asmbl_23809.p1, internal, 22297, 22431 -recovered pasa_asmbl_23809.p1, internal, 22953, 23075 -recovered pasa_asmbl_23809.p1, internal, 23419, 23582 -recovered pasa_asmbl_23809.p1, internal, 23847, 23982 -recovered pasa_asmbl_23809.p1, internal, 24563, 24683 Valid prediction for GeneMark_model.9193_t Valid prediction for snap_scaffold_2-snap.3619-T1 Valid prediction for GeneMark_model.9147_t Valid prediction for GeneMark_model.9149_t Valid prediction for snap_scaffold_2-snap.3617-T1 Couldn't classify 32350, 33042 Sorry, prediction pasa_asmbl_23804.p1 fails validation. (CCC) AC 32350-33042 AC GAA Valid prediction for GeneMark_model.9139_t Valid prediction for GlimmerHMM_glimmerT_5657-T1 Valid prediction for snap_scaffold_2-snap.3620-T1 Valid prediction for GeneMark_model.9167_t Valid prediction for GeneMark_model.9170_t Valid prediction for GlimmerHMM_glimmerT_5655-T1 Valid prediction for GlimmerHMM_glimmerT_5651-T1 Valid prediction for HiQ_model.g3824.t1 Valid prediction for snap_scaffold_2-snap.3651-T1 Valid prediction for GlimmerHMM_glimmerT_5666-T1 Valid prediction for snap_scaffold_2-snap.3643-T1 Valid prediction for GlimmerHMM_glimmerT_5661-T1 Valid prediction for GlimmerHMM_glimmerT_5653-T1 Valid prediction for GeneMark_model.9152_t Valid prediction for GeneMark_model.9182_t Valid prediction for snap_scaffold_2-snap.3640-T1 Valid prediction for snap_scaffold_2-snap.3625-T1 Valid prediction for GeneMark_model.9175_t Valid prediction for snap_scaffold_2-snap.3630-T1 Valid prediction for GlimmerHMM_glimmerT_5670-T1 Valid prediction for GlimmerHMM_glimmerT_5652-T1 Valid prediction for Augustus_model.g3818.t1 Valid prediction for GlimmerHMM_glimmerT_5659-T1 Valid prediction for GlimmerHMM_glimmerT_5658-T1 Valid prediction for Augustus_model.g3825.t1 Valid prediction for GeneMark_model.9172_t Valid prediction for GeneMark_model.9166_t Valid prediction for GeneMark_model.9150_t Valid prediction for snap_scaffold_2-snap.3634-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_5665-T1 Valid prediction for GeneMark_model.9156_t Valid prediction for GlimmerHMM_glimmerT_5654-T1 Couldn't classify 28349, 28498 Couldn't classify 28900, 29055 Sorry, prediction pasa_asmbl_23807.p1 fails validation. (GCC) AT 28349-28498 GT AGG (GTG) AG 28900-29055 GA TTG Valid prediction for Augustus_model.g3828.t1 Valid prediction for GeneMark_model.9177_t Couldn't classify 191973, 192005 Sorry, prediction GeneMark_model.9131_t fails validation. (ATG) GC 191466-191535 GT CGG (AAA) AG 191655-191670 GT AGG (GGA) AG 191691-191726 GT AGG (GGA) AG 191749-191865 GT AGG (GAG) AG 191908-191949 GT AGG (GGG) AG 191973-192005 GT AGG -recovered GeneMark_model.9131_t, initial, 191466, 191535 -recovered GeneMark_model.9131_t, terminal, 191691, 191726 -recovered GeneMark_model.9131_t, internal, 191655, 191670 -recovered GeneMark_model.9131_t, internal, 191691, 191726 -recovered GeneMark_model.9131_t, internal, 191749, 191865 -recovered GeneMark_model.9131_t, internal, 191908, 191949 -recovered GeneMark_model.9131_t, internal, 191973, 192005 Valid prediction for GeneMark_model.9143_t Valid prediction for Augustus_model.g3826.t1 Valid prediction for GeneMark_model.9135_t Couldn't classify 43524, 43556 Sorry, prediction pasa_asmbl_23802.p1 fails validation. (CTG) TC 43524-43556 GT GTG (ACG) AG 43761-43826 GT TGG (GCA) AG 44160-44326 GT AAG (TTA) AG 44497-44573 GT AGG (GGA) AG 44757-44890 GT AGG (GCG) AG 45262-45317 GT AGG (GGC) AG 45581-45728 GT AGG (GCT) AG 46039-46130 GT CAG (GTA) AG 46240-46350 GT CCG (GAT) AG 46729-46896 GT AGG (GTA) AG 47238-47378 GT CAG (GTA) AG 47577-47658 GT AGG (CTC) AG 47990-48142 TT GAT -recovered pasa_asmbl_23802.p1, terminal, 47990, 48142 -recovered pasa_asmbl_23802.p1, internal, 43761, 43826 -recovered pasa_asmbl_23802.p1, internal, 44160, 44326 -recovered pasa_asmbl_23802.p1, internal, 44497, 44573 -recovered pasa_asmbl_23802.p1, internal, 44757, 44890 -recovered pasa_asmbl_23802.p1, internal, 45262, 45317 -recovered pasa_asmbl_23802.p1, internal, 45581, 45728 -recovered pasa_asmbl_23802.p1, internal, 46039, 46130 -recovered pasa_asmbl_23802.p1, internal, 46240, 46350 -recovered pasa_asmbl_23802.p1, internal, 46729, 46896 -recovered pasa_asmbl_23802.p1, internal, 47238, 47378 -recovered pasa_asmbl_23802.p1, internal, 47577, 47658 Valid prediction for GlimmerHMM_glimmerT_5648-T1 Valid prediction for GlimmerHMM_glimmerT_5669-T1 Valid prediction for pasa_asmbl_23796.p1 Couldn't classify 10432, 10696 Couldn't classify 14511, 14560 Sorry, prediction pasa_asmbl_23811.p1 fails validation. (GTC) CA 10432-10696 GT ACG (AAC) AG 11538-11801 GT CTG (TTC) AG 12083-12346 GT AGG (TCC) AG 12757-13020 GT TGG (TCC) AG 14046-14315 GT ACG (GTC) AG 14511-14560 CT GCC -recovered pasa_asmbl_23811.p1, internal, 11538, 11801 -recovered pasa_asmbl_23811.p1, internal, 12083, 12346 -recovered pasa_asmbl_23811.p1, internal, 12757, 13020 -recovered pasa_asmbl_23811.p1, internal, 14046, 14315 Couldn't classify 129618, 130079 Sorry, prediction pasa_asmbl_23800.p1 fails validation. (CCA) AG 129618-130079 CT GCC Valid prediction for Augustus_model.g3822.t1 Valid prediction for GeneMark_model.9164_t Valid prediction for Augustus_model.g3823.t1 Couldn't classify 15131, 15380 Couldn't classify 20811, 20917 Sorry, prediction pasa_asmbl_23810.p1 fails validation. (TCT) CC 15131-15380 GT AAG (CCC) AG 16343-16636 GT CAG (AGC) AG 18173-18445 GT CCG (GCC) AG 18927-19076 GT CGG (ACA) AG 19415-19820 GT AGG (GAT) AG 20035-20132 GT AGG (AGC) AG 20811-20917 TA TGT -recovered pasa_asmbl_23810.p1, internal, 16343, 16636 -recovered pasa_asmbl_23810.p1, internal, 18173, 18445 -recovered pasa_asmbl_23810.p1, internal, 18927, 19076 -recovered pasa_asmbl_23810.p1, internal, 19415, 19820 -recovered pasa_asmbl_23810.p1, internal, 20035, 20132 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 39933, rend_intergenic: 13475 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42182, rend_intergenic: 40314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43855, rend_intergenic: 42668 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49497, rend_intergenic: 44026 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52220, rend_intergenic: 49497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58027, rend_intergenic: 55522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59032, rend_intergenic: 58297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69739, rend_intergenic: 59819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78616, rend_intergenic: 71317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92908, rend_intergenic: 78717 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94323, rend_intergenic: 92989 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107120, rend_intergenic: 94473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111136, rend_intergenic: 108501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118995, rend_intergenic: 116104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129272, rend_intergenic: 119503 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130944, rend_intergenic: 129348 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134694, rend_intergenic: 131316 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139227, rend_intergenic: 135927 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139707, rend_intergenic: 139247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144111, rend_intergenic: 142845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147110, rend_intergenic: 144437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148471, rend_intergenic: 147364 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153798, rend_intergenic: 148831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165780, rend_intergenic: 157222 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187457, rend_intergenic: 179966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197414, rend_intergenic: 194157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198702, rend_intergenic: 198372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210700, rend_intergenic: 207609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 215033 -exon list size: 928 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.0 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.8 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 88.0 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.4 99.5 99.6 99.7 99.8 99.9 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 39933, rend_intergenic: 13475 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 42182, rend_intergenic: 40314 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 43855, rend_intergenic: 42668 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49497, rend_intergenic: 44026 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52220, rend_intergenic: 49497 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58027, rend_intergenic: 55522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59032, rend_intergenic: 58297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69739, rend_intergenic: 59819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78616, rend_intergenic: 71317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92908, rend_intergenic: 78717 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94323, rend_intergenic: 92989 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107120, rend_intergenic: 94473 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111136, rend_intergenic: 108501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118995, rend_intergenic: 116104 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129272, rend_intergenic: 119503 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130944, rend_intergenic: 129348 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134694, rend_intergenic: 131316 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139227, rend_intergenic: 135927 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 139707, rend_intergenic: 139247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144111, rend_intergenic: 142845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 147110, rend_intergenic: 144437 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 148471, rend_intergenic: 147364 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 153798, rend_intergenic: 148831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165780, rend_intergenic: 157222 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187457, rend_intergenic: 179966 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 197414, rend_intergenic: 194157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 198702, rend_intergenic: 198372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 210700, rend_intergenic: 207609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 16 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 23469 -exon list size: 13 building trellis 6.7 13.3 20.0 26.7 33.3 40.0 46.7 53.3 60.0 66.7 73.3 80.0 86.7 93.3 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 23363 -exon list size: 10 building trellis 8.3 16.7 25.0 33.3 41.7 50.0 58.3 66.7 75.0 83.3 91.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 23028 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 1 - 12398 -building DP trellis -building trellis in range 12418 - 23028 -exon list size: 1 building trellis 33.3 66.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support