-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_18093917-18361725 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.9103_t Valid prediction for GeneMark_model.9031_t Valid prediction for snap_scaffold_2-snap.3582-T1 Valid prediction for GeneMark_model.9095_t Valid prediction for GeneMark_model.9081_t Valid prediction for snap_scaffold_2-snap.3569-T1 Valid prediction for GeneMark_model.9122_t Valid prediction for Augustus_model.g3804.t1 Valid prediction for GeneMark_model.9126_t Valid prediction for Augustus_model.g3815.t1 Valid prediction for GlimmerHMM_glimmerT_5621-T1 Valid prediction for GlimmerHMM_glimmerT_5616-T1 Valid prediction for GeneMark_model.9038_t Valid prediction for GlimmerHMM_glimmerT_5644-T1 Valid prediction for snap_scaffold_2-snap.3584-T1 Valid prediction for GeneMark_model.9090_t Valid prediction for snap_scaffold_2-snap.3560-T1 Valid prediction for GeneMark_model.9045_t Valid prediction for snap_scaffold_2-snap.3587-T1 Valid prediction for GeneMark_model.9070_t Valid prediction for GeneMark_model.9124_t Valid prediction for snap_scaffold_2-snap.3554-T1 Valid prediction for GlimmerHMM_glimmerT_5634-T1 Valid prediction for GeneMark_model.9105_t Valid prediction for snap_scaffold_2-snap.3598-T1 Valid prediction for snap_scaffold_2-snap.3556-T1 Valid prediction for GlimmerHMM_glimmerT_5635-T1 Valid prediction for Augustus_model.g3814.t1 Valid prediction for GlimmerHMM_glimmerT_5645-T1 Valid prediction for GeneMark_model.9074_t Valid prediction for snap_scaffold_2-snap.3580-T1 Valid prediction for GeneMark_model.9034_t Couldn't classify 255266, 255411 Sorry, prediction GeneMark_model.9130_t fails validation. (ATG) GC 254893-254900 GT GTG (AGA) AG 255069-255101 GC GAG (AGA) AG 255124-255240 GC GAG (AGA) AG 255266-255411 GT AAG -recovered GeneMark_model.9130_t, initial, 254893, 254900 -recovered GeneMark_model.9130_t, internal, 255069, 255101 -recovered GeneMark_model.9130_t, internal, 255124, 255240 -recovered GeneMark_model.9130_t, internal, 255266, 255411 Valid prediction for snap_scaffold_2-snap.3585-T1 Valid prediction for GeneMark_model.9107_t Valid prediction for snap_scaffold_2-snap.3550-T1 Valid prediction for snap_scaffold_2-snap.3591-T1 Valid prediction for Augustus_model.g3808.t1 Valid prediction for snap_scaffold_2-snap.3571-T1 Valid prediction for GlimmerHMM_glimmerT_5640-T1 Valid prediction for snap_scaffold_2-snap.3577-T1 Valid prediction for GeneMark_model.9032_t Valid prediction for GeneMark_model.9059_t Valid prediction for GlimmerHMM_glimmerT_5622-T1 Valid prediction for GeneMark_model.9092_t Valid prediction for GeneMark_model.9065_t Valid prediction for GlimmerHMM_glimmerT_5623-T1 Valid prediction for GlimmerHMM_glimmerT_5625-T1 Valid prediction for GeneMark_model.9113_t Valid prediction for GeneMark_model.9072_t Valid prediction for snap_scaffold_2-snap.3563-T1 Valid prediction for GeneMark_model.9041_t Valid prediction for GeneMark_model.9068_t Valid prediction for GeneMark_model.9066_t Valid prediction for snap_scaffold_2-snap.3601-T1 Valid prediction for GeneMark_model.9076_t Valid prediction for GeneMark_model.9055_t Valid prediction for GeneMark_model.9116_t Valid prediction for snap_scaffold_2-snap.3574-T1 Valid prediction for GlimmerHMM_glimmerT_5615-T1 Valid prediction for GeneMark_model.9083_t Valid prediction for GeneMark_model.9106_t Valid prediction for snap_scaffold_2-snap.3551-T1 Valid prediction for GeneMark_model.9079_t Valid prediction for GeneMark_model.9047_t Valid prediction for snap_scaffold_2-snap.3589-T1 Valid prediction for snap_scaffold_2-snap.3576-T1 Valid prediction for GlimmerHMM_glimmerT_5638-T1 Valid prediction for GeneMark_model.9101_t Valid prediction for GlimmerHMM_glimmerT_5637-T1 Valid prediction for GlimmerHMM_glimmerT_5630-T1 Valid prediction for Augustus_model.g3805.t1 Valid prediction for snap_scaffold_2-snap.3559-T1 Valid prediction for Augustus_model.g3807.t1 Valid prediction for snap_scaffold_2-snap.3570-T1 Valid prediction for GeneMark_model.9099_t Valid prediction for snap_scaffold_2-snap.3562-T1 Valid prediction for Augustus_model.g3806.t1 Valid prediction for GlimmerHMM_glimmerT_5617-T1 Valid prediction for GeneMark_model.9057_t Valid prediction for GeneMark_model.9118_t Valid prediction for snap_scaffold_2-snap.3597-T1 Valid prediction for snap_scaffold_2-snap.3568-T1 Valid prediction for GeneMark_model.9036_t Valid prediction for GeneMark_model.9061_t Valid prediction for GlimmerHMM_glimmerT_5626-T1 Valid prediction for snap_scaffold_2-snap.3581-T1 Valid prediction for GeneMark_model.9052_t Valid prediction for GlimmerHMM_glimmerT_5629-T1 Valid prediction for GeneMark_model.9050_t Valid prediction for GeneMark_model.9128_t Valid prediction for GeneMark_model.9108_t Valid prediction for GeneMark_model.9093_t Valid prediction for GeneMark_model.9043_t Valid prediction for GlimmerHMM_glimmerT_5618-T1 Valid prediction for GeneMark_model.9097_t Valid prediction for snap_scaffold_2-snap.3594-T1 Valid prediction for GlimmerHMM_glimmerT_5627-T1 Valid prediction for GeneMark_model.9067_t Valid prediction for snap_scaffold_2-snap.3600-T1 Valid prediction for snap_scaffold_2-snap.3588-T1 Valid prediction for snap_scaffold_2-snap.3603-T1 Valid prediction for snap_scaffold_2-snap.3567-T1 Valid prediction for GeneMark_model.9109_t Valid prediction for GeneMark_model.9085_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.9121_t Valid prediction for snap_scaffold_2-snap.3561-T1 Valid prediction for snap_scaffold_2-snap.3604-T1 Valid prediction for GlimmerHMM_glimmerT_5632-T1 Valid prediction for GeneMark_model.9078_t Valid prediction for snap_scaffold_2-snap.3593-T1 Valid prediction for Augustus_model.g3813.t1 Couldn't classify 62533, 62569 Sorry, prediction pasa_asmbl_23791.p1 fails validation. (ATG) TG 54655-54705 GT AGG (GAT) AG 57638-57701 GT AGG (GCA) AG 58085-58231 GT AGG (ACC) AG 59351-59482 GT TGG (TTT) AG 60412-60505 GT AAG (GGC) AG 62533-62569 AG CAA -recovered pasa_asmbl_23791.p1, initial, 54655, 54705 -recovered pasa_asmbl_23791.p1, internal, 57638, 57701 -recovered pasa_asmbl_23791.p1, internal, 58085, 58231 -recovered pasa_asmbl_23791.p1, internal, 59351, 59482 -recovered pasa_asmbl_23791.p1, internal, 60412, 60505 Valid prediction for Augustus_model.g3811.t1 Valid prediction for GlimmerHMM_glimmerT_5620-T1 Valid prediction for GeneMark_model.9117_t Valid prediction for snap_scaffold_2-snap.3557-T1 Valid prediction for snap_scaffold_2-snap.3583-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_2-snap.3586-T1 Valid prediction for CodingQuarry_transcript_28789-T1 Valid prediction for snap_scaffold_2-snap.3599-T1 Valid prediction for GeneMark_model.9060_t Valid prediction for GeneMark_model.9035_t Valid prediction for GeneMark_model.9125_t Valid prediction for snap_scaffold_2-snap.3595-T1 Valid prediction for GeneMark_model.9102_t Valid prediction for GeneMark_model.9077_t Valid prediction for GlimmerHMM_glimmerT_5641-T1 Valid prediction for GeneMark_model.9037_t Valid prediction for GeneMark_model.9044_t Valid prediction for GeneMark_model.9112_t Valid prediction for GlimmerHMM_glimmerT_5633-T1 Valid prediction for GeneMark_model.9042_t Valid prediction for GlimmerHMM_glimmerT_5646-T1 Valid prediction for GlimmerHMM_glimmerT_5631-T1 Valid prediction for GeneMark_model.9071_t Valid prediction for GeneMark_model.9062_t Valid prediction for GeneMark_model.9082_t Valid prediction for GeneMark_model.9089_t Valid prediction for snap_scaffold_2-snap.3565-T1 Valid prediction for GeneMark_model.9084_t Valid prediction for GeneMark_model.9086_t Valid prediction for Augustus_model.g3816.t1 Couldn't classify 94542, 94670 Couldn't classify 99356, 99511 Sorry, prediction pasa_asmbl_23786.p1 fails validation. (CAC) GT 94542-94670 GT TGG (GTG) AG 96203-96334 GT GGG (ACC) AG 97334-97510 GT AGG (GGC) AG 99356-99511 AA ACA -recovered pasa_asmbl_23786.p1, internal, 96203, 96334 -recovered pasa_asmbl_23786.p1, internal, 97334, 97510 Valid prediction for GeneMark_model.9040_t Valid prediction for Augustus_model.g3812.t1 Valid prediction for snap_scaffold_2-snap.3564-T1 Valid prediction for GeneMark_model.9048_t Valid prediction for GeneMark_model.9098_t Valid prediction for snap_scaffold_2-snap.3553-T1 Valid prediction for GeneMark_model.9091_t Valid prediction for GeneMark_model.9058_t Valid prediction for GeneMark_model.9100_t Valid prediction for GeneMark_model.9051_t Valid prediction for snap_scaffold_2-snap.3558-T1 Valid prediction for snap_scaffold_2-snap.3552-T1 Valid prediction for snap_scaffold_2-snap.3596-T1 Valid prediction for GeneMark_model.9073_t Valid prediction for GeneMark_model.9030_t Valid prediction for GeneMark_model.9046_t Valid prediction for GeneMark_model.9129_t Valid prediction for GeneMark_model.9104_t Valid prediction for GeneMark_model.9115_t Valid prediction for GeneMark_model.9049_t Valid prediction for GeneMark_model.9110_t Valid prediction for GeneMark_model.9053_t Valid prediction for GeneMark_model.9039_t Valid prediction for GeneMark_model.9094_t Valid prediction for GeneMark_model.9029_t Couldn't classify 65750, 65944 Couldn't classify 71798, 72087 Sorry, prediction pasa_asmbl_23788.p1 fails validation. (CTG) GT 65750-65944 GT AGG (GAA) AG 66068-66239 GT AGG (ATC) AG 67749-67813 GT ACG (GAT) AG 68400-68516 GT AGG (GAG) AG 71311-71524 GT TGG (AGC) AG 71798-72087 TG GGT add_exon() Sorry, pasa_asmbl_23788.p1 66068-66239-terminal-3 is invalid. -recovered pasa_asmbl_23788.p1, terminal, 66068, 66239 -recovered pasa_asmbl_23788.p1, internal, 66068, 66239 -recovered pasa_asmbl_23788.p1, internal, 67749, 67813 -recovered pasa_asmbl_23788.p1, internal, 68400, 68516 -recovered pasa_asmbl_23788.p1, internal, 71311, 71524 Valid prediction for GlimmerHMM_glimmerT_5624-T1 Valid prediction for GlimmerHMM_glimmerT_5636-T1 Valid prediction for snap_scaffold_2-snap.3592-T1 Valid prediction for GeneMark_model.9054_t Valid prediction for GeneMark_model.9064_t Valid prediction for GeneMark_model.9111_t Valid prediction for GlimmerHMM_glimmerT_5642-T1 Valid prediction for GlimmerHMM_glimmerT_5643-T1 Valid prediction for GlimmerHMM_glimmerT_5619-T1 Couldn't classify 104721, 105023 Sorry, prediction pasa_asmbl_23785.p1 fails validation. (TGT) GC 104721-105023 GG AAG Valid prediction for GeneMark_model.9069_t Valid prediction for GeneMark_model.9080_t Valid prediction for GeneMark_model.9033_t Valid prediction for GeneMark_model.9075_t Valid prediction for snap_scaffold_2-snap.3566-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_2-snap.3578-T1 Valid prediction for GeneMark_model.9123_t Valid prediction for GeneMark_model.9088_t Valid prediction for snap_scaffold_2-snap.3590-T1 Valid prediction for snap_scaffold_2-snap.3555-T1 Valid prediction for GlimmerHMM_glimmerT_5628-T1 Valid prediction for GlimmerHMM_glimmerT_5639-T1 Couldn't classify 75678, 75763 Couldn't classify 79015, 79170 Sorry, prediction pasa_asmbl_23787.p1 fails validation. (AGG) AT 75678-75763 GT AGG (TCC) AG 76085-76171 GT AGG (TCA) AG 77069-77217 GT CGG (GGA) AG 78067-78154 GT AGG (GAA) AG 78617-78749 GT AGG (TCC) AG 79015-79170 AA GTA -recovered pasa_asmbl_23787.p1, internal, 76085, 76171 -recovered pasa_asmbl_23787.p1, internal, 77069, 77217 -recovered pasa_asmbl_23787.p1, internal, 78067, 78154 -recovered pasa_asmbl_23787.p1, internal, 78617, 78749 Valid prediction for GeneMark_model.9120_t Valid prediction for Augustus_model.g3809.t1 Valid prediction for GeneMark_model.9119_t Valid prediction for snap_scaffold_2-snap.3572-T1 Valid prediction for GeneMark_model.9056_t Valid prediction for GeneMark_model.9087_t Valid prediction for snap_scaffold_2-snap.3573-T1 Valid prediction for snap_scaffold_2-snap.3575-T1 Valid prediction for snap_scaffold_2-snap.3579-T1 Valid prediction for Augustus_model.g3810.t1 Valid prediction for snap_scaffold_2-snap.3602-T1 Valid prediction for GeneMark_model.9114_t Valid prediction for GeneMark_model.9127_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10877, rend_intergenic: 6442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18988, rend_intergenic: 12977 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21228, rend_intergenic: 20870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24317, rend_intergenic: 23827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28397, rend_intergenic: 24601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35677, rend_intergenic: 33502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61715, rend_intergenic: 52938 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77632, rend_intergenic: 62570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111765, rend_intergenic: 87980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126799, rend_intergenic: 112052 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137408, rend_intergenic: 133854 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162569, rend_intergenic: 149558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165125, rend_intergenic: 162787 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182932, rend_intergenic: 167333 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193745, rend_intergenic: 186844 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195852, rend_intergenic: 193785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205594, rend_intergenic: 196269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209009, rend_intergenic: 207301 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218669, rend_intergenic: 209547 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219176, rend_intergenic: 219145 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228301, rend_intergenic: 219819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235213, rend_intergenic: 231800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236701, rend_intergenic: 236078 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244879, rend_intergenic: 236757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252290, rend_intergenic: 250252 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254644, rend_intergenic: 252295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254875, rend_intergenic: 254666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 267809 -exon list size: 1088 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 33.9 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.8 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.1 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.9 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.2 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.9 -found 56 predictions from path traversal Error with prediction: snap lend_intergenic: 10877, rend_intergenic: 6442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18988, rend_intergenic: 12977 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21228, rend_intergenic: 20870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 24317, rend_intergenic: 23827 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28397, rend_intergenic: 24601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35677, rend_intergenic: 33502 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61715, rend_intergenic: 52938 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77632, rend_intergenic: 62570 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111765, rend_intergenic: 87980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126799, rend_intergenic: 112052 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 137408, rend_intergenic: 133854 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162569, rend_intergenic: 149558 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165125, rend_intergenic: 162787 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 182932, rend_intergenic: 167333 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193745, rend_intergenic: 186844 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195852, rend_intergenic: 193785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 205594, rend_intergenic: 196269 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 209009, rend_intergenic: 207301 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218669, rend_intergenic: 209547 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 219176, rend_intergenic: 219145 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228301, rend_intergenic: 219819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235213, rend_intergenic: 231800 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 236701, rend_intergenic: 236078 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244879, rend_intergenic: 236757 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252290, rend_intergenic: 250252 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254644, rend_intergenic: 252295 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254875, rend_intergenic: 254666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 16 predictions persist after filtering for low support -building DP trellis -building trellis in range 255012 - 267809 -exon list size: 9 building trellis 9.1 18.2 27.3 36.4 45.5 54.5 63.6 72.7 81.8 90.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 255102 - 267809 -exon list size: 6 building trellis 12.5 25.0 37.5 50.0 62.5 75.0 87.5 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support