-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_17380796-17652703 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.8907_t Valid prediction for snap_scaffold_2-snap.3446-T1 Valid prediction for snap_scaffold_2-snap.3453-T1 Valid prediction for GeneMark_model.8898_t Valid prediction for GlimmerHMM_glimmerT_5537-T1 Valid prediction for GlimmerHMM_glimmerT_5509-T1 Couldn't classify 228826, 228975 Sorry, prediction pasa_asmbl_25219.p1 fails validation. (CTG) GC 228826-228975 GT AGG (GAA) AG 229752-229820 GT CGG (GAG) AG 230128-230412 GT TAG (GTG) AG 230577-230693 GT ATG (AGT) AG 230794-230909 GT AGG (GAA) AG 231455-231589 GT AGG (TAA) AG 231770-231875 GT GGG (CAA) AG 231965-232025 GT GGG (TGA) AG 232240-232391 GT AGG (GAA) AG 233480-233554 GT GGG (ATC) AG 234024-234252 GT GGG (AAA) AG 234461-234633 GT AGG (TGT) AG 234771-234868 GT CCG (GTG) AG 234977-235107 GT GGG (TGA) AG 235238-235443 GT ACG (GCG) AG 235569-235771 GT AGG (GTA) AG 235853-235958 GT AGG (CAC) AG 236177-236401 CC AGC -recovered pasa_asmbl_25219.p1, terminal, 236177, 236401 -recovered pasa_asmbl_25219.p1, internal, 229752, 229820 -recovered pasa_asmbl_25219.p1, internal, 230128, 230412 -recovered pasa_asmbl_25219.p1, internal, 230577, 230693 -recovered pasa_asmbl_25219.p1, internal, 230794, 230909 -recovered pasa_asmbl_25219.p1, internal, 231455, 231589 -recovered pasa_asmbl_25219.p1, internal, 231770, 231875 -recovered pasa_asmbl_25219.p1, internal, 231965, 232025 -recovered pasa_asmbl_25219.p1, internal, 232240, 232391 -recovered pasa_asmbl_25219.p1, internal, 233480, 233554 -recovered pasa_asmbl_25219.p1, internal, 234024, 234252 -recovered pasa_asmbl_25219.p1, internal, 234461, 234633 -recovered pasa_asmbl_25219.p1, internal, 234771, 234868 -recovered pasa_asmbl_25219.p1, internal, 234977, 235107 -recovered pasa_asmbl_25219.p1, internal, 235238, 235443 -recovered pasa_asmbl_25219.p1, internal, 235569, 235771 -recovered pasa_asmbl_25219.p1, internal, 235853, 235958 Valid prediction for snap_scaffold_2-snap.3447-T1 Valid prediction for GlimmerHMM_glimmerT_5518-T1 Valid prediction for GlimmerHMM_glimmerT_5513-T1 Valid prediction for Augustus_model.g3735.t1 Valid prediction for HiQ_model.g3742.t1 Valid prediction for GlimmerHMM_glimmerT_5517-T1 Couldn't classify 160794, 160843 Sorry, prediction pasa_asmbl_25208.p1 fails validation. (TGT) TT 160794-160843 GT CCG (GGA) AG 161029-161155 GT CAG (TGC) AG 161262-161357 GT AGG (CAT) AG 161578-161711 GT AGG (GGA) AG 161846-162020 TC GAT -recovered pasa_asmbl_25208.p1, terminal, 161846, 162020 -recovered pasa_asmbl_25208.p1, internal, 161029, 161155 -recovered pasa_asmbl_25208.p1, internal, 161262, 161357 -recovered pasa_asmbl_25208.p1, internal, 161578, 161711 Valid prediction for GlimmerHMM_glimmerT_5511-T1 Valid prediction for GeneMark_model.8937_t Valid prediction for snap_scaffold_2-snap.3448-T1 Couldn't classify 159051, 159197 Sorry, prediction pasa_asmbl_25207.p1 fails validation. (ATG) AA 158703-158939 GT AGG (GAA) AG 159051-159197 CT TAC -recovered pasa_asmbl_25207.p1, initial, 158703, 158939 Valid prediction for GlimmerHMM_glimmerT_5528-T1 Couldn't classify 70988, 71077 Couldn't classify 72524, 72649 Sorry, prediction pasa_asmbl_25197.p2 fails validation. (TCT) GG 70988-71077 GT CCG (GCG) AG 71196-71336 GT CGG (AAA) AG 72142-72251 GT AAG (GAA) AG 72346-72436 GT AGG (GCT) AG 72524-72649 GT CGG -recovered pasa_asmbl_25197.p2, internal, 71196, 71336 -recovered pasa_asmbl_25197.p2, internal, 72142, 72251 -recovered pasa_asmbl_25197.p2, internal, 72346, 72436 -recovered pasa_asmbl_25197.p2, internal, 72524, 72649 Valid prediction for Augustus_model.g3755.t1 Valid prediction for Augustus_model.g3744.t1 Valid prediction for GeneMark_model.8922_t Valid prediction for snap_scaffold_2-snap.3417-T1 Valid prediction for GeneMark_model.8884_t Valid prediction for GlimmerHMM_glimmerT_5535-T1 Valid prediction for GeneMark_model.8936_t Valid prediction for GeneMark_model.8893_t Valid prediction for GeneMark_model.8900_t Valid prediction for GeneMark_model.8890_t Couldn't classify 163876, 163902 Couldn't classify 165324, 165490 Sorry, prediction pasa_asmbl_25209.p1 fails validation. (CAC) CA 163876-163902 GT AGG (ATC) AG 164118-164178 GT TAG (GTA) AG 164369-164482 GT AGG (GTC) AG 164602-164664 GT CGG (AAG) AG 164849-165007 GT AGG (AAA) AG 165324-165490 GT AGG -recovered pasa_asmbl_25209.p1, internal, 164118, 164178 -recovered pasa_asmbl_25209.p1, internal, 164369, 164482 -recovered pasa_asmbl_25209.p1, internal, 164602, 164664 -recovered pasa_asmbl_25209.p1, internal, 164849, 165007 -recovered pasa_asmbl_25209.p1, internal, 165324, 165490 Valid prediction for CodingQuarry_transcript_28764-T1 Couldn't classify 264478, 264616 Couldn't classify 266967, 267074 Sorry, prediction pasa_asmbl_25225.p1 fails validation. (ATT) CT 264478-264616 GT GGG (TTC) AG 266343-266406 GT TGG (GTA) AG 266537-266765 GT CTG (GTG) AG 266967-267074 GT GGG -recovered pasa_asmbl_25225.p1, internal, 266343, 266406 -recovered pasa_asmbl_25225.p1, internal, 266537, 266765 -recovered pasa_asmbl_25225.p1, internal, 266967, 267074 Valid prediction for GeneMark_model.8909_t Valid prediction for Augustus_model.g3743.t1 Valid prediction for GlimmerHMM_glimmerT_5531-T1 Valid prediction for CodingQuarry_transcript_28769-T1 Couldn't classify 83861, 83922 Sorry, prediction pasa_asmbl_25203.p1 fails validation. (CAA) GG 83861-83922 GT AGG (ATT) AG 84924-85107 GT GGG (GAG) AG 85405-85500 GT AAG (GAG) AG 85632-85709 GT AGG (ATC) AG 85817-86041 GT AGG (ATG) AG 86734-86862 GT AGG (CTG) AG 86986-87098 GT AAG (TGG) AG 87307-87330 GT ACG (GAA) AG 87779-87878 GT GGG (ATC) AG 88004-88070 GT TGG (CGG) AG 88174-88259 GA AAG -recovered pasa_asmbl_25203.p1, initial, 86734, 86862 -recovered pasa_asmbl_25203.p1, terminal, 86986, 87098 -recovered pasa_asmbl_25203.p1, terminal, 88174, 88259 -recovered pasa_asmbl_25203.p1, internal, 84924, 85107 -recovered pasa_asmbl_25203.p1, internal, 85405, 85500 -recovered pasa_asmbl_25203.p1, internal, 85632, 85709 -recovered pasa_asmbl_25203.p1, internal, 85817, 86041 -recovered pasa_asmbl_25203.p1, internal, 86734, 86862 -recovered pasa_asmbl_25203.p1, internal, 86986, 87098 -recovered pasa_asmbl_25203.p1, internal, 87307, 87330 -recovered pasa_asmbl_25203.p1, internal, 87779, 87878 -recovered pasa_asmbl_25203.p1, internal, 88004, 88070 Valid prediction for snap_scaffold_2-snap.3434-T1 Valid prediction for snap_scaffold_2-snap.3459-T1 Valid prediction for snap_scaffold_2-snap.3424-T1 Valid prediction for snap_scaffold_2-snap.3463-T1 Valid prediction for snap_scaffold_2-snap.3454-T1 Valid prediction for Augustus_model.g3751.t1 Valid prediction for GeneMark_model.8903_t Valid prediction for snap_scaffold_2-snap.3465-T1 Valid prediction for GeneMark_model.8913_t Valid prediction for snap_scaffold_2-snap.3437-T1 Valid prediction for snap_scaffold_2-snap.3452-T1 Valid prediction for GeneMark_model.8917_t Valid prediction for snap_scaffold_2-snap.3464-T1 Valid prediction for Augustus_model.g3753.t1 Valid prediction for snap_scaffold_2-snap.3419-T1 Valid prediction for Augustus_model.g3748.t1 Valid prediction for Augustus_model.g3747.t1 Valid prediction for pasa_asmbl_25202.p1 Valid prediction for snap_scaffold_2-snap.3428-T1 Valid prediction for snap_scaffold_2-snap.3460-T1 Valid prediction for Augustus_model.g3750.t1 Valid prediction for snap_scaffold_2-snap.3466-T1 Valid prediction for snap_scaffold_2-snap.3433-T1 Valid prediction for GeneMark_model.8935_t Valid prediction for snap_scaffold_2-snap.3449-T1 Valid prediction for GeneMark_model.8915_t Valid prediction for GeneMark_model.8891_t Valid prediction for CodingQuarry_transcript_28767-T1 Valid prediction for CodingQuarry_transcript_28763-T1 Couldn't classify 225493, 225534 Sorry, prediction pasa_asmbl_25218.p2 fails validation. (ATG) AG 221441-221510 GT CGG (AAG) AG 224313-224380 GT AGG (TTA) AG 225049-225177 GT GGG (ATT) AG 225493-225534 GT GGG -recovered pasa_asmbl_25218.p2, initial, 221441, 221510 -recovered pasa_asmbl_25218.p2, internal, 221441, 221510 -recovered pasa_asmbl_25218.p2, internal, 224313, 224380 -recovered pasa_asmbl_25218.p2, internal, 225049, 225177 -recovered pasa_asmbl_25218.p2, internal, 225493, 225534 Valid prediction for GeneMark_model.8929_t Valid prediction for GeneMark_model.8933_t Valid prediction for GeneMark_model.8911_t Valid prediction for GlimmerHMM_glimmerT_5536-T1 Valid prediction for snap_scaffold_2-snap.3426-T1 Valid prediction for GeneMark_model.8931_t Valid prediction for GeneMark_model.8888_t Valid prediction for CodingQuarry_transcript_28768-T1 Couldn't classify 149250, 149305 Sorry, prediction pasa_asmbl_25479.p1 fails validation. (GTG) CA 149250-149305 GT AGG (GTT) AG 149582-149697 GT CAG (TGG) AG 149932-150088 GT AGG (GCT) AG 150447-150529 GT GGG (CTG) AG 150669-150854 GT CAG (ACT) AG 150968-151152 GT AGG (GAC) AG 151626-151718 GT CGG (GTA) AG 152121-152213 TC GAT -recovered pasa_asmbl_25479.p1, terminal, 152121, 152213 -recovered pasa_asmbl_25479.p1, internal, 149582, 149697 -recovered pasa_asmbl_25479.p1, internal, 149932, 150088 -recovered pasa_asmbl_25479.p1, internal, 150447, 150529 -recovered pasa_asmbl_25479.p1, internal, 150669, 150854 -recovered pasa_asmbl_25479.p1, internal, 150968, 151152 -recovered pasa_asmbl_25479.p1, internal, 151626, 151718 Valid prediction for snap_scaffold_2-snap.3435-T1 Valid prediction for GlimmerHMM_glimmerT_5539-T1 Couldn't classify 189368, 189463 Sorry, prediction pasa_asmbl_25214.p1 fails validation. (GTG) GT 189368-189463 GT CGG (TTC) AG 189624-189698 GT CTG (ATC) AG 189924-190037 GT CGG (CTG) AG 190225-190323 GT CGG (AGT) AG 190569-190652 GT TGG (ATA) AG 191130-191195 GA AAG -recovered pasa_asmbl_25214.p1, terminal, 191130, 191195 -recovered pasa_asmbl_25214.p1, internal, 189624, 189698 -recovered pasa_asmbl_25214.p1, internal, 189924, 190037 -recovered pasa_asmbl_25214.p1, internal, 190225, 190323 -recovered pasa_asmbl_25214.p1, internal, 190569, 190652 Valid prediction for snap_scaffold_2-snap.3427-T1 Valid prediction for snap_scaffold_2-snap.3422-T1 Valid prediction for GeneMark_model.8882_t Valid prediction for snap_scaffold_2-snap.3462-T1 Valid prediction for snap_scaffold_2-snap.3420-T1 Valid prediction for GlimmerHMM_glimmerT_5506-T1 Valid prediction for GeneMark_model.8927_t Valid prediction for snap_scaffold_2-snap.3445-T1 Valid prediction for HiQ_model.g3737.t1 Valid prediction for GeneMark_model.8905_t Valid prediction for Augustus_model.g3754.t1 Couldn't classify 72755, 72900 Sorry, prediction pasa_asmbl_25198.p1 fails validation. (CAG) TG 72755-72900 GT AAG (AGA) AG 73013-73133 GT GGG (CAG) AG 73420-73515 GT AGG (CCT) AG 73665-73727 GT AGG (GGA) AG 73814-73967 GT AGG (GTA) AG 74262-74446 GG AAG -recovered pasa_asmbl_25198.p1, terminal, 74262, 74446 -recovered pasa_asmbl_25198.p1, internal, 73013, 73133 -recovered pasa_asmbl_25198.p1, internal, 73420, 73515 -recovered pasa_asmbl_25198.p1, internal, 73665, 73727 -recovered pasa_asmbl_25198.p1, internal, 73814, 73967 Couldn't classify 84491, 84540 Couldn't classify 85817, 85936 Sorry, prediction pasa_asmbl_25205.p1 fails validation. (CAT) GT 84491-84540 GT GGG (ATT) AG 84924-85107 GT GGG (GAG) AG 85405-85500 GT AAG (GAG) AG 85632-85709 GT AGG (ATC) AG 85817-85936 AG ACA -recovered pasa_asmbl_25205.p1, internal, 84924, 85107 -recovered pasa_asmbl_25205.p1, internal, 85405, 85500 -recovered pasa_asmbl_25205.p1, internal, 85632, 85709 Couldn't classify 199361, 199478 Couldn't classify 202764, 202957 Sorry, prediction pasa_asmbl_25215.p1 fails validation. (CGG) TG 199361-199478 GT AGG (GGA) AG 200433-200607 GT AGG (GAA) AG 200768-200885 GT AGG (GGA) AG 201028-201192 GT ACG (AGG) AG 201401-201580 GT GGG (TGG) AG 202417-202570 GT GGG (CTA) AG 202764-202957 AG GAA -recovered pasa_asmbl_25215.p1, internal, 200433, 200607 -recovered pasa_asmbl_25215.p1, internal, 200768, 200885 -recovered pasa_asmbl_25215.p1, internal, 201028, 201192 -recovered pasa_asmbl_25215.p1, internal, 201401, 201580 -recovered pasa_asmbl_25215.p1, internal, 202417, 202570 Valid prediction for GlimmerHMM_glimmerT_5520-T1 Valid prediction for GeneMark_model.8886_t Valid prediction for GlimmerHMM_glimmerT_5527-T1 Valid prediction for GlimmerHMM_glimmerT_5505-T1 Valid prediction for GeneMark_model.8902_t Valid prediction for snap_scaffold_2-snap.3431-T1 Couldn't classify 147742, 147969 Couldn't classify 148609, 148677 Sorry, prediction pasa_asmbl_25206.p1 fails validation. (GAG) CA 147742-147969 GT AGG (ATG) AG 148241-148426 GT CAG (GAG) AG 148609-148677 AA ACA -recovered pasa_asmbl_25206.p1, initial, 148241, 148426 -recovered pasa_asmbl_25206.p1, internal, 148241, 148426 Valid prediction for Augustus_model.g3752.t1 Valid prediction for snap_scaffold_2-snap.3461-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.8896_t Valid prediction for GeneMark_model.8916_t Valid prediction for GeneMark_model.8910_t Valid prediction for GlimmerHMM_glimmerT_5512-T1 Valid prediction for GlimmerHMM_glimmerT_5538-T1 Valid prediction for GlimmerHMM_glimmerT_5534-T1 Valid prediction for pasa_asmbl_23742.p1 Valid prediction for snap_scaffold_2-snap.3457-T1 Valid prediction for GeneMark_model.8926_t Valid prediction for snap_scaffold_2-snap.3444-T1 Valid prediction for GeneMark_model.8889_t Valid prediction for GlimmerHMM_glimmerT_5525-T1 Valid prediction for GlimmerHMM_glimmerT_5532-T1 Valid prediction for GeneMark_model.8914_t Valid prediction for GlimmerHMM_glimmerT_5519-T1 Valid prediction for GeneMark_model.8925_t Valid prediction for Augustus_model.g3732.t1 Valid prediction for Augustus_model.g3730.t1 Valid prediction for snap_scaffold_2-snap.3439-T1 Valid prediction for GeneMark_model.8894_t Valid prediction for snap_scaffold_2-snap.3440-T1 Valid prediction for pasa_asmbl_23745.p1 Valid prediction for snap_scaffold_2-snap.3436-T1 Valid prediction for Augustus_model.g3749.t1 Valid prediction for GlimmerHMM_glimmerT_5523-T1 Valid prediction for GlimmerHMM_glimmerT_5529-T1 Valid prediction for snap_scaffold_2-snap.3443-T1 Valid prediction for GeneMark_model.8924_t Valid prediction for GlimmerHMM_glimmerT_5514-T1 Valid prediction for GeneMark_model.8901_t Valid prediction for snap_scaffold_2-snap.3425-T1 Valid prediction for Augustus_model.g3740.t1 Valid prediction for GeneMark_model.8920_t Valid prediction for GlimmerHMM_glimmerT_5521-T1 Valid prediction for snap_scaffold_2-snap.3458-T1 Valid prediction for snap_scaffold_2-snap.3423-T1 Valid prediction for HiQ_model.g3734.t1 Valid prediction for snap_scaffold_2-snap.3441-T1 Valid prediction for GeneMark_model.8897_t Valid prediction for CodingQuarry_transcript_28765-T1 Valid prediction for snap_scaffold_2-snap.3442-T1 Valid prediction for Augustus_model.g3738.t1 Valid prediction for Augustus_model.g3746.t1 Valid prediction for Augustus_model.g3745.t1 Valid prediction for Augustus_model.g3733.t1 Valid prediction for snap_scaffold_2-snap.3450-T1 Valid prediction for GlimmerHMM_glimmerT_5524-T1 Valid prediction for GeneMark_model.8895_t Couldn't classify 171251, 171419 Sorry, prediction pasa_asmbl_23739.p1 fails validation. (CGC) CT 171251-171419 GT AGG (AAC) AG 171539-171659 GT AGG (GTT) AG 172105-172254 GT AGG (GTT) AG 172379-172498 GT AGG (GTG) AG 172602-172715 GT GGG (ATA) AG 173032-173138 GT TGG (GTG) AG 173285-173678 GT AGG (GGC) AG 173893-173953 CT AGC -recovered pasa_asmbl_23739.p1, terminal, 173893, 173953 -recovered pasa_asmbl_23739.p1, internal, 171539, 171659 -recovered pasa_asmbl_23739.p1, internal, 172105, 172254 -recovered pasa_asmbl_23739.p1, internal, 172379, 172498 -recovered pasa_asmbl_23739.p1, internal, 172602, 172715 -recovered pasa_asmbl_23739.p1, internal, 173032, 173138 -recovered pasa_asmbl_23739.p1, internal, 173285, 173678 Valid prediction for Augustus_model.g3739.t1 Valid prediction for GeneMark_model.8919_t Valid prediction for CodingQuarry_transcript_28766-T1 Valid prediction for GeneMark_model.8904_t Valid prediction for GlimmerHMM_glimmerT_5526-T1 Valid prediction for Augustus_model.g3736.t1 Valid prediction for GeneMark_model.8938_t Valid prediction for Augustus_model.g3741.t1 Couldn't classify 167540, 167757 Couldn't classify 168124, 168142 Sorry, prediction pasa_asmbl_23744.p1 fails validation. (GAG) GG 167540-167757 GT AGG (GGC) AG 167856-167927 GT GGG (GGA) AG 168124-168142 TG CAT -recovered pasa_asmbl_23744.p1, internal, 167856, 167927 Valid prediction for snap_scaffold_2-snap.3418-T1 Valid prediction for GeneMark_model.8908_t Valid prediction for GeneMark_model.8883_t Valid prediction for Augustus_model.g3729.t1 Valid prediction for GeneMark_model.8918_t Valid prediction for snap_scaffold_2-snap.3430-T1 Valid prediction for snap_scaffold_2-snap.3451-T1 Valid prediction for GlimmerHMM_glimmerT_5533-T1 Valid prediction for snap_scaffold_2-snap.3456-T1 Valid prediction for GlimmerHMM_glimmerT_5510-T1 Valid prediction for GeneMark_model.8892_t Valid prediction for GeneMark_model.8923_t Valid prediction for GlimmerHMM_glimmerT_5516-T1 Valid prediction for GlimmerHMM_glimmerT_5508-T1 Valid prediction for GeneMark_model.8930_t Valid prediction for GeneMark_model.8932_t Valid prediction for snap_scaffold_2-snap.3421-T1 Valid prediction for snap_scaffold_2-snap.3438-T1 Valid prediction for GlimmerHMM_glimmerT_5522-T1 Valid prediction for GlimmerHMM_glimmerT_5515-T1 Valid prediction for CodingQuarry_transcript_28762-T1 Valid prediction for GeneMark_model.8934_t Valid prediction for Augustus_model.g3731.t1 Valid prediction for GeneMark_model.8887_t Valid prediction for GeneMark_model.8906_t Valid prediction for snap_scaffold_2-snap.3429-T1 Valid prediction for pasa_asmbl_23738.p1 Valid prediction for GlimmerHMM_glimmerT_5507-T1 Valid prediction for GeneMark_model.8885_t Valid prediction for snap_scaffold_2-snap.3432-T1 Couldn't classify 169629, 169786 Couldn't classify 170803, 171079 Sorry, prediction pasa_asmbl_23743.p1 fails validation. (CTG) AT 169629-169786 GT AGG (TGT) AG 170344-170490 GT GAG (GGC) AG 170593-170661 GT ACG (CTC) AG 170803-171079 GA AGG -recovered pasa_asmbl_23743.p1, internal, 170344, 170490 -recovered pasa_asmbl_23743.p1, internal, 170593, 170661 Valid prediction for snap_scaffold_2-snap.3455-T1 Valid prediction for GlimmerHMM_glimmerT_5530-T1 Valid prediction for GeneMark_model.8912_t Valid prediction for GeneMark_model.8921_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5137, rend_intergenic: 4904 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12190, rend_intergenic: 6488 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19493, rend_intergenic: 13500 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28157, rend_intergenic: 24612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50846, rend_intergenic: 35713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55500, rend_intergenic: 51086 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63452, rend_intergenic: 61233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67264, rend_intergenic: 64189 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 271908 -exon list size: 902 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.4 20.5 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.7 33.8 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.4 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.6 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.2 66.3 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.5 79.6 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 41 predictions from path traversal Error with prediction: snap lend_intergenic: 5137, rend_intergenic: 4904 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12190, rend_intergenic: 6488 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19493, rend_intergenic: 13500 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28157, rend_intergenic: 24612 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50846, rend_intergenic: 35713 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55500, rend_intergenic: 51086 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63452, rend_intergenic: 61233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67264, rend_intergenic: 64189 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 36 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 26512 -exon list size: 113 building trellis 0.9 1.7 2.6 3.5 4.3 5.2 6.1 7.0 7.8 8.7 9.6 10.4 11.3 12.2 13.0 13.9 14.8 15.7 16.5 17.4 18.3 19.1 20.0 20.9 21.7 22.6 23.5 24.3 25.2 26.1 27.0 27.8 28.7 29.6 30.4 31.3 32.2 33.0 33.9 34.8 35.7 36.5 37.4 38.3 39.1 40.0 40.9 41.7 42.6 43.5 44.3 45.2 46.1 47.0 47.8 48.7 49.6 50.4 51.3 52.2 53.0 53.9 54.8 55.7 56.5 57.4 58.3 59.1 60.0 60.9 61.7 62.6 63.5 64.3 65.2 66.1 67.0 67.8 68.7 69.6 70.4 71.3 72.2 73.0 73.9 74.8 75.7 76.5 77.4 78.3 79.1 80.0 80.9 81.7 82.6 83.5 84.3 85.2 86.1 87.0 87.8 88.7 89.6 90.4 91.3 92.2 93.0 93.9 94.8 95.7 96.5 97.4 98.3 99.1 -found 2 predictions from path traversal -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support