-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_16983728-17231757 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.8788_t Valid prediction for GeneMark_model.8823_t Valid prediction for GlimmerHMM_glimmerT_5455-T1 Valid prediction for snap_scaffold_2-snap.3331-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.8790_t Valid prediction for snap_scaffold_2-snap.3315-T1 Valid prediction for GlimmerHMM_glimmerT_5447-T1 Valid prediction for GeneMark_model.8805_t Valid prediction for GeneMark_model.8819_t Valid prediction for snap_scaffold_2-snap.3341-T1 Valid prediction for snap_scaffold_2-snap.3350-T1 Valid prediction for snap_scaffold_2-snap.3370-T1 Valid prediction for GlimmerHMM_glimmerT_5461-T1 Valid prediction for GlimmerHMM_glimmerT_5476-T1 Valid prediction for snap_scaffold_2-snap.3368-T1 Valid prediction for GlimmerHMM_glimmerT_5473-T1 Valid prediction for GlimmerHMM_glimmerT_5475-T1 Valid prediction for GlimmerHMM_glimmerT_5467-T1 Valid prediction for snap_scaffold_2-snap.3346-T1 Valid prediction for snap_scaffold_2-snap.3362-T1 Valid prediction for snap_scaffold_2-snap.3372-T1 Valid prediction for GeneMark_model.8803_t Valid prediction for Augustus_model.g3686.t1 Valid prediction for GlimmerHMM_glimmerT_5463-T1 Valid prediction for GeneMark_model.8810_t Valid prediction for GeneMark_model.8768_t Valid prediction for GlimmerHMM_glimmerT_5453-T1 Valid prediction for GeneMark_model.8767_t Valid prediction for GlimmerHMM_glimmerT_5459-T1 Valid prediction for snap_scaffold_2-snap.3363-T1 Valid prediction for snap_scaffold_2-snap.3374-T1 Valid prediction for snap_scaffold_2-snap.3356-T1 Valid prediction for snap_scaffold_2-snap.3366-T1 Valid prediction for snap_scaffold_2-snap.3323-T1 Valid prediction for GeneMark_model.8774_t Valid prediction for snap_scaffold_2-snap.3375-T1 Valid prediction for GlimmerHMM_glimmerT_5472-T1 Valid prediction for GeneMark_model.8760_t Valid prediction for snap_scaffold_2-snap.3334-T1 Valid prediction for snap_scaffold_2-snap.3318-T1 Valid prediction for Augustus_model.g3694.t1 Valid prediction for snap_scaffold_2-snap.3358-T1 Valid prediction for HiQ_model.g3700.t1 Valid prediction for GeneMark_model.8764_t Valid prediction for GeneMark_model.8813_t Valid prediction for Augustus_model.g3698.t1 Valid prediction for Augustus_model.g3699.t1 Valid prediction for GeneMark_model.8815_t Valid prediction for snap_scaffold_2-snap.3348-T1 Valid prediction for snap_scaffold_2-snap.3364-T1 Valid prediction for snap_scaffold_2-snap.3325-T1 Valid prediction for snap_scaffold_2-snap.3326-T1 Valid prediction for GeneMark_model.8801_t Valid prediction for Augustus_model.g3697.t1 Valid prediction for CodingQuarry_transcript_28759-T1 Valid prediction for pasa_asmbl_25194.p1 Valid prediction for snap_scaffold_2-snap.3338-T1 Valid prediction for GeneMark_model.8825_t Couldn't classify 172230, 172550 Sorry, prediction pasa_asmbl_25193.p1 fails validation. (ATG) AG 170894-170982 GT AGG (GTG) AG 171279-171427 GT CAG (TTG) AG 171706-171836 GT AGG (CGC) AG 172230-172550 GT ATG -recovered pasa_asmbl_25193.p1, initial, 170894, 170982 -recovered pasa_asmbl_25193.p1, internal, 170894, 170982 -recovered pasa_asmbl_25193.p1, internal, 171279, 171427 -recovered pasa_asmbl_25193.p1, internal, 171706, 171836 -recovered pasa_asmbl_25193.p1, internal, 172230, 172550 Valid prediction for GeneMark_model.8762_t Valid prediction for GeneMark_model.8784_t Valid prediction for GeneMark_model.8786_t Valid prediction for snap_scaffold_2-snap.3342-T1 Valid prediction for snap_scaffold_2-snap.3317-T1 Valid prediction for snap_scaffold_2-snap.3340-T1 Valid prediction for GeneMark_model.8779_t Valid prediction for Augustus_model.g3689.t1 Valid prediction for GeneMark_model.8766_t Valid prediction for GlimmerHMM_glimmerT_5454-T1 Valid prediction for snap_scaffold_2-snap.3360-T1 Valid prediction for Augustus_model.g3684.t1 Valid prediction for GeneMark_model.8800_t Valid prediction for snap_scaffold_2-snap.3343-T1 Valid prediction for GeneMark_model.8754_t Valid prediction for snap_scaffold_2-snap.3316-T1 Valid prediction for GeneMark_model.8757_t Valid prediction for GeneMark_model.8821_t Valid prediction for GeneMark_model.8808_t Valid prediction for snap_scaffold_2-snap.3354-T1 Valid prediction for snap_scaffold_2-snap.3371-T1 Valid prediction for GeneMark_model.8753_t Valid prediction for GeneMark_model.8772_t Valid prediction for GeneMark_model.8792_t Valid prediction for GeneMark_model.8752_t Valid prediction for GeneMark_model.8826_t Valid prediction for snap_scaffold_2-snap.3336-T1 Valid prediction for GlimmerHMM_glimmerT_5464-T1 Valid prediction for GlimmerHMM_glimmerT_5448-T1 Valid prediction for Augustus_model.g3685.t1 Valid prediction for snap_scaffold_2-snap.3320-T1 Valid prediction for Augustus_model.g3691.t1 Valid prediction for GeneMark_model.8781_t Valid prediction for GeneMark_model.8796_t Valid prediction for GeneMark_model.8817_t Valid prediction for GeneMark_model.8770_t Valid prediction for GeneMark_model.8777_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_5468-T1 Valid prediction for GlimmerHMM_glimmerT_5458-T1 Valid prediction for GlimmerHMM_glimmerT_5456-T1 Valid prediction for snap_scaffold_2-snap.3329-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.8818_t Valid prediction for snap_scaffold_2-snap.3332-T1 Valid prediction for GeneMark_model.8765_t Valid prediction for GeneMark_model.8806_t Valid prediction for GeneMark_model.8761_t Valid prediction for GeneMark_model.8776_t Valid prediction for GeneMark_model.8783_t Valid prediction for GlimmerHMM_glimmerT_5479-T1 Valid prediction for GeneMark_model.8809_t Valid prediction for HiQ_model.g3687.t1 Valid prediction for Augustus_model.g3692.t1 Valid prediction for GlimmerHMM_glimmerT_5471-T1 Valid prediction for GlimmerHMM_glimmerT_5469-T1 Valid prediction for snap_scaffold_2-snap.3319-T1 Valid prediction for snap_scaffold_2-snap.3352-T1 Valid prediction for snap_scaffold_2-snap.3337-T1 Valid prediction for GeneMark_model.8758_t Valid prediction for Augustus_model.g3704.t1 Valid prediction for snap_scaffold_2-snap.3339-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.8816_t Couldn't classify 44906, 44929 Couldn't classify 57385, 57493 Sorry, prediction pasa_asmbl_23729.p1 fails validation. (CGG) GT 44906-44929 GT AGG (GAC) AG 46292-46352 GT TGG (GAT) AG 47668-47745 GT AGG (GTA) AG 47894-48028 GT CCG (GGA) AG 50164-50269 GT CAG (CCT) AG 51298-51522 GT TGG (TGA) AG 52801-52880 GT CGG (AGG) AG 55715-55895 GT ATG (GGA) AG 57385-57493 CC AGC -recovered pasa_asmbl_23729.p1, internal, 46292, 46352 -recovered pasa_asmbl_23729.p1, internal, 47668, 47745 -recovered pasa_asmbl_23729.p1, internal, 47894, 48028 -recovered pasa_asmbl_23729.p1, internal, 50164, 50269 -recovered pasa_asmbl_23729.p1, internal, 51298, 51522 -recovered pasa_asmbl_23729.p1, internal, 52801, 52880 -recovered pasa_asmbl_23729.p1, internal, 55715, 55895 Valid prediction for GeneMark_model.8822_t Valid prediction for GeneMark_model.8759_t Valid prediction for GlimmerHMM_glimmerT_5450-T1 Valid prediction for Augustus_model.g3693.t1 Valid prediction for Augustus_model.g3705.t1 Valid prediction for snap_scaffold_2-snap.3324-T1 Valid prediction for Augustus_model.g3701.t1 Valid prediction for CodingQuarry_transcript_28757-T1 Valid prediction for GeneMark_model.8827_t Valid prediction for GeneMark_model.8798_t Valid prediction for GeneMark_model.8763_t Valid prediction for GlimmerHMM_glimmerT_5460-T1 Valid prediction for Augustus_model.g3688.t1 Valid prediction for GlimmerHMM_glimmerT_5446-T1 Valid prediction for snap_scaffold_2-snap.3328-T1 Valid prediction for Augustus_model.g3703.t1 Couldn't classify 59761, 60123 Sorry, prediction pasa_asmbl_23728.p1 fails validation. (AAG) GG 59761-60123 GT AGG (GAC) AG 61290-61694 GC GAG -recovered pasa_asmbl_23728.p1, terminal, 61290, 61694 -recovered pasa_asmbl_23728.p1, internal, 61290, 61694 Valid prediction for GlimmerHMM_glimmerT_5457-T1 Valid prediction for Augustus_model.g3702.t1 Valid prediction for GeneMark_model.8756_t Valid prediction for snap_scaffold_2-snap.3361-T1 Valid prediction for GeneMark_model.8824_t Valid prediction for GeneMark_model.8804_t Valid prediction for snap_scaffold_2-snap.3344-T1 Valid prediction for GeneMark_model.8787_t Valid prediction for snap_scaffold_2-snap.3330-T1 Valid prediction for GeneMark_model.8778_t Valid prediction for snap_scaffold_2-snap.3376-T1 Valid prediction for GeneMark_model.8807_t Valid prediction for snap_scaffold_2-snap.3357-T1 Valid prediction for GlimmerHMM_glimmerT_5449-T1 Valid prediction for snap_scaffold_2-snap.3335-T1 Valid prediction for GeneMark_model.8811_t Valid prediction for GlimmerHMM_glimmerT_5474-T1 Valid prediction for GeneMark_model.8771_t Valid prediction for GeneMark_model.8812_t Valid prediction for snap_scaffold_2-snap.3367-T1 Valid prediction for Augustus_model.g3696.t1 Valid prediction for GlimmerHMM_glimmerT_5470-T1 Valid prediction for snap_scaffold_2-snap.3347-T1 Valid prediction for GeneMark_model.8785_t Valid prediction for pasa_asmbl_23721.p1 Valid prediction for GlimmerHMM_glimmerT_5465-T1 Valid prediction for GeneMark_model.8769_t Valid prediction for GeneMark_model.8775_t Valid prediction for GlimmerHMM_glimmerT_5478-T1 Couldn't classify 67021, 67064 Couldn't classify 67654, 67746 Sorry, prediction pasa_asmbl_24019.p1 fails validation. (GAG) TG 67021-67064 GT AGG (TGG) AG 67221-67386 GT AGG (GGT) AG 67654-67746 AA GCA -recovered pasa_asmbl_24019.p1, internal, 67221, 67386 Valid prediction for GeneMark_model.8780_t Valid prediction for GeneMark_model.8820_t Valid prediction for Augustus_model.g3706.t1 Valid prediction for snap_scaffold_2-snap.3373-T1 Valid prediction for GeneMark_model.8755_t Valid prediction for snap_scaffold_2-snap.3322-T1 Valid prediction for snap_scaffold_2-snap.3355-T1 Valid prediction for snap_scaffold_2-snap.3345-T1 Valid prediction for CodingQuarry_transcript_28758-T1 Valid prediction for GeneMark_model.8814_t Valid prediction for snap_scaffold_2-snap.3333-T1 Valid prediction for GeneMark_model.8789_t Valid prediction for GlimmerHMM_glimmerT_5462-T1 Valid prediction for snap_scaffold_2-snap.3349-T1 Valid prediction for GeneMark_model.8793_t Valid prediction for snap_scaffold_2-snap.3351-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_2-snap.3353-T1 Valid prediction for GeneMark_model.8782_t Valid prediction for GeneMark_model.8791_t Valid prediction for GeneMark_model.8802_t Couldn't classify 34147, 34248 Couldn't classify 37850, 37951 Sorry, prediction pasa_asmbl_24039.p1 fails validation. (AAG) AG 34147-34248 GT AAG (CGC) AG 35067-35195 GT ACG (TGT) AG 36894-37115 GT AGG (GTG) AG 37850-37951 GT AGG -recovered pasa_asmbl_24039.p1, internal, 34147, 34248 -recovered pasa_asmbl_24039.p1, internal, 35067, 35195 -recovered pasa_asmbl_24039.p1, internal, 36894, 37115 -recovered pasa_asmbl_24039.p1, internal, 37850, 37951 Valid prediction for snap_scaffold_2-snap.3365-T1 Valid prediction for GlimmerHMM_glimmerT_5452-T1 Valid prediction for snap_scaffold_2-snap.3359-T1 Valid prediction for Augustus_model.g3707.t1 Valid prediction for GeneMark_model.8797_t Valid prediction for GlimmerHMM_glimmerT_5477-T1 Valid prediction for snap_scaffold_2-snap.3321-T1 Valid prediction for GlimmerHMM_glimmerT_5451-T1 Valid prediction for snap_scaffold_2-snap.3327-T1 Valid prediction for GeneMark_model.8773_t Valid prediction for GeneMark_model.8799_t Valid prediction for Augustus_model.g3695.t1 Valid prediction for GlimmerHMM_glimmerT_5466-T1 Valid prediction for snap_scaffold_2-snap.3369-T1 Valid prediction for CodingQuarry_transcript_28756-T1 Valid prediction for Augustus_model.g3690.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 42577, rend_intergenic: 38689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44320, rend_intergenic: 43060 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48653, rend_intergenic: 44444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51808, rend_intergenic: 49293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56472, rend_intergenic: 55046 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74681, rend_intergenic: 69804 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77178, rend_intergenic: 74766 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95739, rend_intergenic: 91972 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96289, rend_intergenic: 95915 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114466, rend_intergenic: 96388 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 114597 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134296, rend_intergenic: 133213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143820, rend_intergenic: 136658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152864, rend_intergenic: 150618 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169144, rend_intergenic: 153410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171416, rend_intergenic: 169259 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172776, rend_intergenic: 171675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176722, rend_intergenic: 172795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181193, rend_intergenic: 178831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185843, rend_intergenic: 184360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188136, rend_intergenic: 186337 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202366, rend_intergenic: 188212 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202645, rend_intergenic: 202511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208319, rend_intergenic: 202680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217307, rend_intergenic: 210571 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218020, rend_intergenic: 217337 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228067, rend_intergenic: 219004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241763, rend_intergenic: 229083 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244523, rend_intergenic: 241831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 248030 -exon list size: 1131 building trellis 0.1 0.2 0.3 0.4 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.1 10.2 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.7 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.7 22.8 22.9 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.5 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.0 44.1 44.2 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.2 46.3 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.7 53.8 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.8 55.9 56.0 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.5 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.3 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.8 89.9 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.6 99.7 99.8 99.9 -found 49 predictions from path traversal Error with prediction: snap lend_intergenic: 42577, rend_intergenic: 38689 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44320, rend_intergenic: 43060 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 48653, rend_intergenic: 44444 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 51808, rend_intergenic: 49293 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56472, rend_intergenic: 55046 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74681, rend_intergenic: 69804 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77178, rend_intergenic: 74766 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95739, rend_intergenic: 91972 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 96289, rend_intergenic: 95915 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114466, rend_intergenic: 96388 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 129997, rend_intergenic: 114597 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134296, rend_intergenic: 133213 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 143820, rend_intergenic: 136658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152864, rend_intergenic: 150618 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 169144, rend_intergenic: 153410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171416, rend_intergenic: 169259 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172776, rend_intergenic: 171675 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176722, rend_intergenic: 172795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181193, rend_intergenic: 178831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185843, rend_intergenic: 184360 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188136, rend_intergenic: 186337 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202366, rend_intergenic: 188212 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 202645, rend_intergenic: 202511 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208319, rend_intergenic: 202680 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217307, rend_intergenic: 210571 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218020, rend_intergenic: 217337 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228067, rend_intergenic: 219004 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241763, rend_intergenic: 229083 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 244523, rend_intergenic: 241831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support