-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_14821291-14974738

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.8217_t
Valid prediction for GeneMark_model.8207_t
Valid prediction for GlimmerHMM_glimmerT_5108-T1
Valid prediction for snap_scaffold_2-snap.2867-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.2886-T1
Valid prediction for GeneMark_model.8188_t
Valid prediction for GeneMark_model.8224_t
Valid prediction for GeneMark_model.8215_t
Valid prediction for GeneMark_model.8191_t
Valid prediction for GeneMark_model.8203_t
Valid prediction for GeneMark_model.8220_t
Valid prediction for snap_scaffold_2-snap.2872-T1
Valid prediction for snap_scaffold_2-snap.2881-T1
Valid prediction for GlimmerHMM_glimmerT_5099-T1
Valid prediction for snap_scaffold_2-snap.2877-T1
Valid prediction for GeneMark_model.8223_t
Valid prediction for snap_scaffold_2-snap.2880-T1
Valid prediction for snap_scaffold_2-snap.2879-T1
Valid prediction for snap_scaffold_2-snap.2869-T1
Valid prediction for snap_scaffold_2-snap.2870-T1
Valid prediction for GeneMark_model.8211_t
Valid prediction for GlimmerHMM_glimmerT_5109-T1
Valid prediction for GeneMark_model.8205_t
Valid prediction for GlimmerHMM_glimmerT_5105-T1
Valid prediction for GeneMark_model.8201_t
Valid prediction for snap_scaffold_2-snap.2882-T1
Valid prediction for snap_scaffold_2-snap.2884-T1
Valid prediction for Augustus_model.g3439.t1
Valid prediction for Augustus_model.g3436.t1
Valid prediction for GeneMark_model.8186_t
Valid prediction for GeneMark_model.8196_t
Valid prediction for snap_scaffold_2-snap.2871-T1
Valid prediction for GlimmerHMM_glimmerT_5096-T1
Valid prediction for GeneMark_model.8209_t
Valid prediction for GeneMark_model.8198_t
Valid prediction for GlimmerHMM_glimmerT_5097-T1
Valid prediction for Augustus_model.g3438.t1
Valid prediction for GlimmerHMM_glimmerT_5095-T1
Valid prediction for Augustus_model.g3434.t1
Valid prediction for GlimmerHMM_glimmerT_5110-T1
Valid prediction for GeneMark_model.8193_t
Valid prediction for snap_scaffold_2-snap.2874-T1
Valid prediction for Augustus_model.g3435.t1
Valid prediction for GeneMark_model.8213_t
Valid prediction for snap_scaffold_2-snap.2865-T1
Valid prediction for GlimmerHMM_glimmerT_5112-T1
Valid prediction for GlimmerHMM_glimmerT_5098-T1
Valid prediction for GlimmerHMM_glimmerT_5101-T1
Valid prediction for GeneMark_model.8216_t
Valid prediction for Augustus_model.g3441.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_5104-T1
Valid prediction for GeneMark_model.8187_t
Valid prediction for snap_scaffold_2-snap.2891-T1
Valid prediction for snap_scaffold_2-snap.2868-T1
Valid prediction for snap_scaffold_2-snap.2866-T1
Valid prediction for GlimmerHMM_glimmerT_5103-T1
Valid prediction for GeneMark_model.8221_t
Valid prediction for snap_scaffold_2-snap.2885-T1
Valid prediction for snap_scaffold_2-snap.2888-T1
Valid prediction for GeneMark_model.8212_t
Valid prediction for Augustus_model.g3440.t1
Valid prediction for GlimmerHMM_glimmerT_5092-T1
Valid prediction for snap_scaffold_2-snap.2889-T1
Valid prediction for Augustus_model.g3437.t1
Valid prediction for GlimmerHMM_glimmerT_5093-T1
Valid prediction for GeneMark_model.8199_t
Valid prediction for snap_scaffold_2-snap.2876-T1
Valid prediction for GeneMark_model.8206_t
Valid prediction for GeneMark_model.8195_t
Valid prediction for GeneMark_model.8189_t
Valid prediction for snap_scaffold_2-snap.2878-T1
Valid prediction for GeneMark_model.8197_t
Valid prediction for Augustus_model.g3443.t1
Valid prediction for snap_scaffold_2-snap.2875-T1
Valid prediction for GeneMark_model.8222_t
Valid prediction for snap_scaffold_2-snap.2873-T1
Valid prediction for GeneMark_model.8194_t
Valid prediction for GlimmerHMM_glimmerT_5100-T1
Valid prediction for GlimmerHMM_glimmerT_5094-T1
Valid prediction for GeneMark_model.8190_t
Valid prediction for GlimmerHMM_glimmerT_5102-T1
Valid prediction for GeneMark_model.8219_t
Valid prediction for GeneMark_model.8202_t
Valid prediction for GlimmerHMM_glimmerT_5111-T1
Valid prediction for GeneMark_model.8208_t
Valid prediction for GlimmerHMM_glimmerT_5113-T1
Valid prediction for GeneMark_model.8200_t
Valid prediction for snap_scaffold_2-snap.2883-T1
Valid prediction for GeneMark_model.8210_t
Valid prediction for Augustus_model.g3442.t1
Valid prediction for GlimmerHMM_glimmerT_5107-T1
Valid prediction for GeneMark_model.8192_t
Valid prediction for GeneMark_model.8204_t
Valid prediction for GeneMark_model.8214_t
Valid prediction for GeneMark_model.8218_t
Valid prediction for GlimmerHMM_glimmerT_5106-T1
Valid prediction for snap_scaffold_2-snap.2890-T1
Valid prediction for snap_scaffold_2-snap.2887-T1
Valid prediction for snap_scaffold_2-snap.2892-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7799, rend_intergenic: 5725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20087, rend_intergenic: 17775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43591, rend_intergenic: 20091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57443, rend_intergenic: 57232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60879, rend_intergenic: 58485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82211, rend_intergenic: 74682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104149, rend_intergenic: 101660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105215, rend_intergenic: 104514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 153448
-exon list size: 428


building trellis

0.2    
0.5    
0.7    
0.9    
1.2    
1.4    
1.6    
1.9    
2.1    
2.3    
2.6    
2.8    
3.0    
3.3    
3.5    
3.7    
4.0    
4.2    
4.4    
4.7    
4.9    
5.1    
5.3    
5.6    
5.8    
6.0    
6.3    
6.5    
6.7    
7.0    
7.2    
7.4    
7.7    
7.9    
8.1    
8.4    
8.6    
8.8    
9.1    
9.3    
9.5    
9.8    
10.0    
10.2    
10.5    
10.7    
10.9    
11.2    
11.4    
11.6    
11.9    
12.1    
12.3    
12.6    
12.8    
13.0    
13.3    
13.5    
13.7    
14.0    
14.2    
14.4    
14.7    
14.9    
15.1    
15.3    
15.6    
15.8    
16.0    
16.3    
16.5    
16.7    
17.0    
17.2    
17.4    
17.7    
17.9    
18.1    
18.4    
18.6    
18.8    
19.1    
19.3    
19.5    
19.8    
20.0    
20.2    
20.5    
20.7    
20.9    
21.2    
21.4    
21.6    
21.9    
22.1    
22.3    
22.6    
22.8    
23.0    
23.3    
23.5    
23.7    
24.0    
24.2    
24.4    
24.7    
24.9    
25.1    
25.3    
25.6    
25.8    
26.0    
26.3    
26.5    
26.7    
27.0    
27.2    
27.4    
27.7    
27.9    
28.1    
28.4    
28.6    
28.8    
29.1    
29.3    
29.5    
29.8    
30.0    
30.2    
30.5    
30.7    
30.9    
31.2    
31.4    
31.6    
31.9    
32.1    
32.3    
32.6    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.4    
34.7    
34.9    
35.1    
35.3    
35.6    
35.8    
36.0    
36.3    
36.5    
36.7    
37.0    
37.2    
37.4    
37.7    
37.9    
38.1    
38.4    
38.6    
38.8    
39.1    
39.3    
39.5    
39.8    
40.0    
40.2    
40.5    
40.7    
40.9    
41.2    
41.4    
41.6    
41.9    
42.1    
42.3    
42.6    
42.8    
43.0    
43.3    
43.5    
43.7    
44.0    
44.2    
44.4    
44.7    
44.9    
45.1    
45.3    
45.6    
45.8    
46.0    
46.3    
46.5    
46.7    
47.0    
47.2    
47.4    
47.7    
47.9    
48.1    
48.4    
48.6    
48.8    
49.1    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
50.9    
51.2    
51.4    
51.6    
51.9    
52.1    
52.3    
52.6    
52.8    
53.0    
53.3    
53.5    
53.7    
54.0    
54.2    
54.4    
54.7    
54.9    
55.1    
55.3    
55.6    
55.8    
56.0    
56.3    
56.5    
56.7    
57.0    
57.2    
57.4    
57.7    
57.9    
58.1    
58.4    
58.6    
58.8    
59.1    
59.3    
59.5    
59.8    
60.0    
60.2    
60.5    
60.7    
60.9    
61.2    
61.4    
61.6    
61.9    
62.1    
62.3    
62.6    
62.8    
63.0    
63.3    
63.5    
63.7    
64.0    
64.2    
64.4    
64.7    
64.9    
65.1    
65.3    
65.6    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.4    
67.7    
67.9    
68.1    
68.4    
68.6    
68.8    
69.1    
69.3    
69.5    
69.8    
70.0    
70.2    
70.5    
70.7    
70.9    
71.2    
71.4    
71.6    
71.9    
72.1    
72.3    
72.6    
72.8    
73.0    
73.3    
73.5    
73.7    
74.0    
74.2    
74.4    
74.7    
74.9    
75.1    
75.3    
75.6    
75.8    
76.0    
76.3    
76.5    
76.7    
77.0    
77.2    
77.4    
77.7    
77.9    
78.1    
78.4    
78.6    
78.8    
79.1    
79.3    
79.5    
79.8    
80.0    
80.2    
80.5    
80.7    
80.9    
81.2    
81.4    
81.6    
81.9    
82.1    
82.3    
82.6    
82.8    
83.0    
83.3    
83.5    
83.7    
84.0    
84.2    
84.4    
84.7    
84.9    
85.1    
85.3    
85.6    
85.8    
86.0    
86.3    
86.5    
86.7    
87.0    
87.2    
87.4    
87.7    
87.9    
88.1    
88.4    
88.6    
88.8    
89.1    
89.3    
89.5    
89.8    
90.0    
90.2    
90.5    
90.7    
90.9    
91.2    
91.4    
91.6    
91.9    
92.1    
92.3    
92.6    
92.8    
93.0    
93.3    
93.5    
93.7    
94.0    
94.2    
94.4    
94.7    
94.9    
95.1    
95.3    
95.6    
95.8    
96.0    
96.3    
96.5    
96.7    
97.0    
97.2    
97.4    
97.7    
97.9    
98.1    
98.4    
98.6    
98.8    
99.1    
99.3    
99.5    
99.8    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 7799, rend_intergenic: 5725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20087, rend_intergenic: 17775  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43591, rend_intergenic: 20091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57443, rend_intergenic: 57232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60879, rend_intergenic: 58485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82211, rend_intergenic: 74682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104149, rend_intergenic: 101660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105215, rend_intergenic: 104514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support