-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_13436247-13617631

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g3302.t1
Valid prediction for snap_scaffold_2-snap.2621-T1
Valid prediction for GlimmerHMM_glimmerT_4933-T1
Valid prediction for snap_scaffold_2-snap.2652-T1
Valid prediction for GeneMark_model.7950_t
Valid prediction for snap_scaffold_2-snap.2653-T1
Valid prediction for GeneMark_model.7941_t
Valid prediction for GeneMark_model.7934_t
Valid prediction for GlimmerHMM_glimmerT_4923-T1
Valid prediction for snap_scaffold_2-snap.2635-T1
Valid prediction for GeneMark_model.7959_t
Valid prediction for snap_scaffold_2-snap.2624-T1
Valid prediction for GlimmerHMM_glimmerT_4931-T1
Valid prediction for snap_scaffold_2-snap.2629-T1
Valid prediction for Augustus_model.g3310.t1
Valid prediction for GeneMark_model.7929_t
Valid prediction for snap_scaffold_2-snap.2643-T1
Valid prediction for snap_scaffold_2-snap.2648-T1
Valid prediction for snap_scaffold_2-snap.2638-T1
Valid prediction for GeneMark_model.7932_t
Valid prediction for GlimmerHMM_glimmerT_4935-T1
Valid prediction for snap_scaffold_2-snap.2650-T1
Valid prediction for snap_scaffold_2-snap.2646-T1
Valid prediction for snap_scaffold_2-snap.2619-T1
Valid prediction for GeneMark_model.7927_t
Valid prediction for GeneMark_model.7956_t
Valid prediction for GeneMark_model.7954_t
Valid prediction for snap_scaffold_2-snap.2642-T1
Valid prediction for GeneMark_model.7969_t
Valid prediction for GeneMark_model.7971_t
Valid prediction for snap_scaffold_2-snap.2639-T1
Valid prediction for Augustus_model.g3306.t1
Valid prediction for GlimmerHMM_glimmerT_4925-T1
Valid prediction for Augustus_model.g3304.t1
Valid prediction for GeneMark_model.7973_t
Valid prediction for snap_scaffold_2-snap.2626-T1
Couldn't classify 7046, 7112
Couldn't classify 7402, 7526
Sorry, prediction CodingQuarry_transcript_28647-T1 fails validation.
(ATG)	 CC	6665-6709	GT	TGG
(GTC)	 AG	7046-7112	AT	AAA
(TTG)	 AC	7402-7526	AG	AAA
-recovered CodingQuarry_transcript_28647-T1, initial, 6665, 6709
Valid prediction for GeneMark_model.7937_t
Valid prediction for GlimmerHMM_glimmerT_4927-T1
Valid prediction for GeneMark_model.7957_t
Valid prediction for GeneMark_model.7943_t
Valid prediction for snap_scaffold_2-snap.2633-T1
Valid prediction for GlimmerHMM_glimmerT_4936-T1
Valid prediction for GlimmerHMM_glimmerT_4921-T1
Valid prediction for GeneMark_model.7962_t
Valid prediction for GeneMark_model.7949_t
Valid prediction for snap_scaffold_2-snap.2623-T1
Valid prediction for GeneMark_model.7966_t
Valid prediction for snap_scaffold_2-snap.2631-T1
Valid prediction for GlimmerHMM_glimmerT_4918-T1
Couldn't classify 28270, 28382
Sorry, prediction pasa_asmbl_24888.p1 fails validation.
(GAC)	 AG	28270-28382	GT	CAG
(GTA)	 AG	28529-28685	GT	AGG
(AGC)	 AG	28854-29006	GT	AGG
(AGC)	 AG	31137-31682	GA	GAG
-recovered pasa_asmbl_24888.p1, terminal, 31137, 31682
-recovered pasa_asmbl_24888.p1, internal, 28270, 28382
-recovered pasa_asmbl_24888.p1, internal, 28529, 28685
-recovered pasa_asmbl_24888.p1, internal, 28854, 29006
Valid prediction for snap_scaffold_2-snap.2655-T1
Valid prediction for snap_scaffold_2-snap.2625-T1
Valid prediction for GlimmerHMM_glimmerT_4916-T1
Valid prediction for GeneMark_model.7964_t
Valid prediction for GeneMark_model.7945_t
Valid prediction for GeneMark_model.7939_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g3308.t1
Valid prediction for GeneMark_model.7944_t
Valid prediction for GlimmerHMM_glimmerT_4929-T1
Valid prediction for GeneMark_model.7928_t
Valid prediction for GeneMark_model.7952_t
Valid prediction for Augustus_model.g3303.t1
Valid prediction for GeneMark_model.7940_t
Valid prediction for GeneMark_model.7951_t
Valid prediction for snap_scaffold_2-snap.2628-T1
Valid prediction for Augustus_model.g3314.t1
Valid prediction for snap_scaffold_2-snap.2627-T1
Valid prediction for snap_scaffold_2-snap.2632-T1
Valid prediction for snap_scaffold_2-snap.2630-T1
Valid prediction for GlimmerHMM_glimmerT_4932-T1
Valid prediction for GeneMark_model.7948_t
Valid prediction for GeneMark_model.7930_t
Valid prediction for snap_scaffold_2-snap.2634-T1
Couldn't classify 160459, 160548
Sorry, prediction GeneMark_model.7926_t fails validation.
(TTT)	 AG	160459-160548	GT	ACG
(TAG)	 AG	160685-160733	GT	AGG
(AAG)	 AG	160937-161064	GT	TGG
(GTG)	 AG	161257-161372	GT	CGG
(TCT)	 AG	161467-161488	GT	CAG
(AGG)	 AG	161642-161724	GT	TGG
(GTC)	 AG	162191-162345	GA	AAG
-recovered GeneMark_model.7926_t, terminal, 162191, 162345
-recovered GeneMark_model.7926_t, internal, 160459, 160548
-recovered GeneMark_model.7926_t, internal, 160685, 160733
-recovered GeneMark_model.7926_t, internal, 160937, 161064
-recovered GeneMark_model.7926_t, internal, 161257, 161372
-recovered GeneMark_model.7926_t, internal, 161467, 161488
-recovered GeneMark_model.7926_t, internal, 161642, 161724
Valid prediction for Augustus_model.g3313.t1
Valid prediction for GeneMark_model.7960_t
Valid prediction for Augustus_model.g3311.t1
Valid prediction for Augustus_model.g3305.t1
Valid prediction for snap_scaffold_2-snap.2622-T1
Valid prediction for GeneMark_model.7967_t
Valid prediction for snap_scaffold_2-snap.2640-T1
Valid prediction for GlimmerHMM_glimmerT_4920-T1
Valid prediction for GeneMark_model.7963_t
Valid prediction for GeneMark_model.7968_t
Valid prediction for snap_scaffold_2-snap.2641-T1
Valid prediction for GeneMark_model.7931_t
Valid prediction for GeneMark_model.7942_t
Valid prediction for Augustus_model.g3309.t1
Valid prediction for GlimmerHMM_glimmerT_4917-T1
Valid prediction for GlimmerHMM_glimmerT_4919-T1
Valid prediction for GeneMark_model.7946_t
Couldn't classify 93730, 93873
Couldn't classify 94134, 94388
Sorry, prediction pasa_asmbl_23930.p1 fails validation.
(GTC)	 TG	93730-93873	GT	AGG
(CCT)	 AG	94134-94388	TG	GGT
Valid prediction for GeneMark_model.7953_t
Valid prediction for snap_scaffold_2-snap.2645-T1
Valid prediction for Augustus_model.g3312.t1
Valid prediction for GeneMark_model.7947_t
Valid prediction for GeneMark_model.7935_t
Valid prediction for GeneMark_model.7936_t
Valid prediction for snap_scaffold_2-snap.2637-T1
Valid prediction for GeneMark_model.7974_t
Valid prediction for GlimmerHMM_glimmerT_4934-T1
Valid prediction for GeneMark_model.7965_t
Valid prediction for GeneMark_model.7933_t
Valid prediction for GlimmerHMM_glimmerT_4922-T1
Valid prediction for snap_scaffold_2-snap.2620-T1
Valid prediction for GeneMark_model.7925_t
Valid prediction for snap_scaffold_2-snap.2654-T1
Valid prediction for snap_scaffold_2-snap.2636-T1
Valid prediction for GlimmerHMM_glimmerT_4926-T1
Valid prediction for GlimmerHMM_glimmerT_4930-T1
Valid prediction for GlimmerHMM_glimmerT_4928-T1
Couldn't classify 158027, 158055
Couldn't classify 161257, 161308
Sorry, prediction pasa_asmbl_23535.p1 fails validation.
(GAA)	 AC	158027-158055	GT	AGG
(TTT)	 AG	160459-160548	GT	ACG
(GGT)	 AG	160646-160733	GT	AGG
(AAG)	 AG	160937-161064	GT	TGG
(GTG)	 AG	161257-161308	AG	ATA
-recovered pasa_asmbl_23535.p1, internal, 160459, 160548
-recovered pasa_asmbl_23535.p1, internal, 160646, 160733
-recovered pasa_asmbl_23535.p1, internal, 160937, 161064
Valid prediction for GeneMark_model.7938_t
Couldn't classify 114957, 115188
Couldn't classify 116464, 116684
Sorry, prediction pasa_asmbl_23537.p2 fails validation.
(AGC)	 GC	114957-115188	GT	CAG
(ACA)	 AG	116464-116684	TG	CCT
Valid prediction for GeneMark_model.7972_t
Valid prediction for GeneMark_model.7958_t
Valid prediction for snap_scaffold_2-snap.2647-T1
Valid prediction for snap_scaffold_2-snap.2649-T1
Valid prediction for GeneMark_model.7961_t
Valid prediction for snap_scaffold_2-snap.2651-T1
Valid prediction for GeneMark_model.7970_t
Valid prediction for snap_scaffold_2-snap.2644-T1
Valid prediction for Augustus_model.g3307.t1
Valid prediction for GlimmerHMM_glimmerT_4924-T1
Couldn't classify 169269, 169400
Sorry, prediction pasa_asmbl_23532.p1 fails validation.
(TGT)	 GC	169269-169400	GT	ATG
(ACA)	 AG	171126-171240	GT	CAG
(TGA)	 AG	171441-171568	GT	AAG
(ATT)	 AG	171684-171778	GT	GCG
(GGT)	 AG	171886-172035	GT	TGG
(GTG)	 AG	172214-172316	CA	AAC
-recovered pasa_asmbl_23532.p1, terminal, 172214, 172316
-recovered pasa_asmbl_23532.p1, internal, 171126, 171240
-recovered pasa_asmbl_23532.p1, internal, 171441, 171568
-recovered pasa_asmbl_23532.p1, internal, 171684, 171778
-recovered pasa_asmbl_23532.p1, internal, 171886, 172035

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11176, rend_intergenic: 9190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14631, rend_intergenic: 11439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21129, rend_intergenic: 14736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45924, rend_intergenic: 42481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55590, rend_intergenic: 53754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65954, rend_intergenic: 58917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67901, rend_intergenic: 67346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70584, rend_intergenic: 68374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75263, rend_intergenic: 72702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87683, rend_intergenic: 79635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99672, rend_intergenic: 97114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104844, rend_intergenic: 100418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111706, rend_intergenic: 105954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130780, rend_intergenic: 121547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145612, rend_intergenic: 142876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156196, rend_intergenic: 148596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180278, rend_intergenic: 162875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 29057, rend_intergenic: 29054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 181385
-exon list size: 595


building trellis

0.2    
0.3    
0.5    
0.7    
0.8    
1.0    
1.2    
1.3    
1.5    
1.7    
1.8    
2.0    
2.2    
2.3    
2.5    
2.7    
2.8    
3.0    
3.2    
3.4    
3.5    
3.7    
3.9    
4.0    
4.2    
4.4    
4.5    
4.7    
4.9    
5.0    
5.2    
5.4    
5.5    
5.7    
5.9    
6.0    
6.2    
6.4    
6.5    
6.7    
6.9    
7.0    
7.2    
7.4    
7.5    
7.7    
7.9    
8.0    
8.2    
8.4    
8.5    
8.7    
8.9    
9.0    
9.2    
9.4    
9.5    
9.7    
9.9    
10.1    
10.2    
10.4    
10.6    
10.7    
10.9    
11.1    
11.2    
11.4    
11.6    
11.7    
11.9    
12.1    
12.2    
12.4    
12.6    
12.7    
12.9    
13.1    
13.2    
13.4    
13.6    
13.7    
13.9    
14.1    
14.2    
14.4    
14.6    
14.7    
14.9    
15.1    
15.2    
15.4    
15.6    
15.7    
15.9    
16.1    
16.2    
16.4    
16.6    
16.8    
16.9    
17.1    
17.3    
17.4    
17.6    
17.8    
17.9    
18.1    
18.3    
18.4    
18.6    
18.8    
18.9    
19.1    
19.3    
19.4    
19.6    
19.8    
19.9    
20.1    
20.3    
20.4    
20.6    
20.8    
20.9    
21.1    
21.3    
21.4    
21.6    
21.8    
21.9    
22.1    
22.3    
22.4    
22.6    
22.8    
22.9    
23.1    
23.3    
23.5    
23.6    
23.8    
24.0    
24.1    
24.3    
24.5    
24.6    
24.8    
25.0    
25.1    
25.3    
25.5    
25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.6    
26.8    
27.0    
27.1    
27.3    
27.5    
27.6    
27.8    
28.0    
28.1    
28.3    
28.5    
28.6    
28.8    
29.0    
29.1    
29.3    
29.5    
29.6    
29.8    
30.0    
30.2    
30.3    
30.5    
30.7    
30.8    
31.0    
31.2    
31.3    
31.5    
31.7    
31.8    
32.0    
32.2    
32.3    
32.5    
32.7    
32.8    
33.0    
33.2    
33.3    
33.5    
33.7    
33.8    
34.0    
34.2    
34.3    
34.5    
34.7    
34.8    
35.0    
35.2    
35.3    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.7    
36.9    
37.0    
37.2    
37.4    
37.5    
37.7    
37.9    
38.0    
38.2    
38.4    
38.5    
38.7    
38.9    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.0    
40.2    
40.4    
40.5    
40.7    
40.9    
41.0    
41.2    
41.4    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.5    
42.7    
42.9    
43.0    
43.2    
43.4    
43.6    
43.7    
43.9    
44.1    
44.2    
44.4    
44.6    
44.7    
44.9    
45.1    
45.2    
45.4    
45.6    
45.7    
45.9    
46.1    
46.2    
46.4    
46.6    
46.7    
46.9    
47.1    
47.2    
47.4    
47.6    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.7    
49.9    
50.1    
50.3    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.4    
52.6    
52.8    
52.9    
53.1    
53.3    
53.4    
53.6    
53.8    
53.9    
54.1    
54.3    
54.4    
54.6    
54.8    
54.9    
55.1    
55.3    
55.4    
55.6    
55.8    
55.9    
56.1    
56.3    
56.4    
56.6    
56.8    
57.0    
57.1    
57.3    
57.5    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.6    
58.8    
59.0    
59.1    
59.3    
59.5    
59.6    
59.8    
60.0    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.6    
61.8    
62.0    
62.1    
62.3    
62.5    
62.6    
62.8    
63.0    
63.1    
63.3    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.3    
67.5    
67.7    
67.8    
68.0    
68.2    
68.3    
68.5    
68.7    
68.8    
69.0    
69.2    
69.3    
69.5    
69.7    
69.8    
70.0    
70.2    
70.4    
70.5    
70.7    
70.9    
71.0    
71.2    
71.4    
71.5    
71.7    
71.9    
72.0    
72.2    
72.4    
72.5    
72.7    
72.9    
73.0    
73.2    
73.4    
73.5    
73.7    
73.9    
74.0    
74.2    
74.4    
74.5    
74.7    
74.9    
75.0    
75.2    
75.4    
75.5    
75.7    
75.9    
76.0    
76.2    
76.4    
76.5    
76.7    
76.9    
77.1    
77.2    
77.4    
77.6    
77.7    
77.9    
78.1    
78.2    
78.4    
78.6    
78.7    
78.9    
79.1    
79.2    
79.4    
79.6    
79.7    
79.9    
80.1    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.2    
81.4    
81.6    
81.7    
81.9    
82.1    
82.2    
82.4    
82.6    
82.7    
82.9    
83.1    
83.2    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
85.9    
86.1    
86.3    
86.4    
86.6    
86.8    
86.9    
87.1    
87.3    
87.4    
87.6    
87.8    
87.9    
88.1    
88.3    
88.4    
88.6    
88.8    
88.9    
89.1    
89.3    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.5    
90.6    
90.8    
91.0    
91.1    
91.3    
91.5    
91.6    
91.8    
92.0    
92.1    
92.3    
92.5    
92.6    
92.8    
93.0    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.1    
94.3    
94.5    
94.6    
94.8    
95.0    
95.1    
95.3    
95.5    
95.6    
95.8    
96.0    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 39 predictions from path traversal
Error with prediction: snap lend_intergenic: 11176, rend_intergenic: 9190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14631, rend_intergenic: 11439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21129, rend_intergenic: 14736  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45924, rend_intergenic: 42481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55590, rend_intergenic: 53754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65954, rend_intergenic: 58917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67901, rend_intergenic: 67346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70584, rend_intergenic: 68374  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75263, rend_intergenic: 72702  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87683, rend_intergenic: 79635  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99672, rend_intergenic: 97114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104844, rend_intergenic: 100418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111706, rend_intergenic: 105954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130780, rend_intergenic: 121547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145612, rend_intergenic: 142876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156196, rend_intergenic: 148596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180278, rend_intergenic: 162875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 29057, rend_intergenic: 29054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support