-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_12492234-12736326 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.7640_t Valid prediction for CodingQuarry_transcript_28634-T1 Valid prediction for Augustus_model.g3214.t1 Valid prediction for Augustus_model.g3212.t1 Valid prediction for GeneMark_model.7626_t Valid prediction for snap_scaffold_2-snap.2431-T1 Valid prediction for snap_scaffold_2-snap.2418-T1 Valid prediction for Augustus_model.g3207.t1 Couldn't classify 217093, 217209 Sorry, prediction pasa_asmbl_24836.p1 fails validation. (GTA) CA 217093-217209 GT AGG (GAC) AG 218015-218193 GT AGG (GGA) AG 219608-219767 GT AGG (GGA) AG 220532-220651 TG GAT -recovered pasa_asmbl_24836.p1, terminal, 220532, 220651 -recovered pasa_asmbl_24836.p1, internal, 218015, 218193 -recovered pasa_asmbl_24836.p1, internal, 219608, 219767 Valid prediction for snap_scaffold_2-snap.2439-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.7637_t Valid prediction for GeneMark_model.7695_t Valid prediction for GlimmerHMM_glimmerT_4798-T1 Valid prediction for GlimmerHMM_glimmerT_4777-T1 Valid prediction for GeneMark_model.7687_t Valid prediction for GlimmerHMM_glimmerT_4774-T1 Valid prediction for GeneMark_model.7691_t Valid prediction for snap_scaffold_2-snap.2428-T1 Valid prediction for Augustus_model.g3203.t1 Valid prediction for GlimmerHMM_glimmerT_4788-T1 Valid prediction for GeneMark_model.7652_t Valid prediction for snap_scaffold_2-snap.2443-T1 Valid prediction for GeneMark_model.7698_t Valid prediction for HiQ_model.g3222.t1 Valid prediction for snap_scaffold_2-snap.2449-T1 Valid prediction for snap_scaffold_2-snap.2410-T1 Valid prediction for GlimmerHMM_glimmerT_4775-T1 Valid prediction for GlimmerHMM_glimmerT_4769-T1 Valid prediction for Augustus_model.g3211.t1 Valid prediction for GlimmerHMM_glimmerT_4776-T1 Valid prediction for GlimmerHMM_glimmerT_4767-T1 Valid prediction for Augustus_model.g3218.t1 Valid prediction for GeneMark_model.7643_t Valid prediction for snap_scaffold_2-snap.2445-T1 Valid prediction for GlimmerHMM_glimmerT_4770-T1 Valid prediction for GeneMark_model.7699_t Valid prediction for snap_scaffold_2-snap.2424-T1 Valid prediction for GeneMark_model.7634_t Valid prediction for snap_scaffold_2-snap.2421-T1 Valid prediction for GeneMark_model.7671_t Valid prediction for HiQ_model.g3224.t1 Valid prediction for GlimmerHMM_glimmerT_4780-T1 Valid prediction for GeneMark_model.7670_t Valid prediction for GeneMark_model.7630_t Valid prediction for snap_scaffold_2-snap.2451-T1 Valid prediction for snap_scaffold_2-snap.2429-T1 Valid prediction for GeneMark_model.7674_t Valid prediction for GeneMark_model.7647_t Valid prediction for GeneMark_model.7639_t Valid prediction for GlimmerHMM_glimmerT_4779-T1 Couldn't classify 85845, 86029 Sorry, prediction pasa_asmbl_24833.p1 fails validation. (CTG) GC 85845-86029 GT AGG (CCG) AG 86189-86396 TC AGT -recovered pasa_asmbl_24833.p1, terminal, 86189, 86396 Valid prediction for GlimmerHMM_glimmerT_4790-T1 Valid prediction for GeneMark_model.7628_t Valid prediction for snap_scaffold_2-snap.2453-T1 Valid prediction for Augustus_model.g3210.t1 Couldn't classify 23787, 24104 Sorry, prediction pasa_asmbl_24831.p1 fails validation. (GAA) CA 23787-24104 CC GAC Valid prediction for GeneMark_model.7673_t Valid prediction for GlimmerHMM_glimmerT_4797-T1 Valid prediction for snap_scaffold_2-snap.2462-T1 Valid prediction for GlimmerHMM_glimmerT_4783-T1 Valid prediction for GlimmerHMM_glimmerT_4765-T1 Valid prediction for GeneMark_model.7663_t Valid prediction for GeneMark_model.7667_t Valid prediction for Augustus_model.g3206.t1 Valid prediction for GeneMark_model.7669_t Valid prediction for GlimmerHMM_glimmerT_4766-T1 Valid prediction for GeneMark_model.7645_t Valid prediction for snap_scaffold_2-snap.2426-T1 Valid prediction for snap_scaffold_2-snap.2417-T1 Valid prediction for GlimmerHMM_glimmerT_4772-T1 Valid prediction for GlimmerHMM_glimmerT_4778-T1 Valid prediction for snap_scaffold_2-snap.2448-T1 Valid prediction for GeneMark_model.7682_t Valid prediction for Augustus_model.g3221.t1 Valid prediction for snap_scaffold_2-snap.2434-T1 Valid prediction for GeneMark_model.7679_t Valid prediction for GeneMark_model.7632_t Valid prediction for snap_scaffold_2-snap.2465-T1 Valid prediction for snap_scaffold_2-snap.2437-T1 Valid prediction for GeneMark_model.7677_t Valid prediction for snap_scaffold_2-snap.2423-T1 Valid prediction for GeneMark_model.7696_t Valid prediction for GeneMark_model.7655_t Valid prediction for GeneMark_model.7659_t Valid prediction for GeneMark_model.7650_t Valid prediction for Augustus_model.g3223.t1 Valid prediction for snap_scaffold_2-snap.2460-T1 Valid prediction for GeneMark_model.7684_t Valid prediction for snap_scaffold_2-snap.2463-T1 Valid prediction for CodingQuarry_transcript_28631-T1 Valid prediction for snap_scaffold_2-snap.2419-T1 Valid prediction for snap_scaffold_2-snap.2412-T1 Valid prediction for Augustus_model.g3209.t1 Valid prediction for GeneMark_model.7661_t Valid prediction for snap_scaffold_2-snap.2436-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.7665_t Valid prediction for GlimmerHMM_glimmerT_4762-T1 Valid prediction for snap_scaffold_2-snap.2414-T1 Valid prediction for GeneMark_model.7653_t Valid prediction for Augustus_model.g3204.t1 Valid prediction for GlimmerHMM_glimmerT_4786-T1 Couldn't classify 145659, 145750 Sorry, prediction pasa_asmbl_24834.p1 fails validation. (ATG) CG 143879-143886 GT AGG (TTA) AG 144022-144187 GT GGG (GGC) AG 144794-144965 GT GTG (ATA) AG 145086-145192 GT AGG (CCT) AG 145411-145465 GT AGG (AGG) AG 145659-145750 AA CCA -recovered pasa_asmbl_24834.p1, initial, 143879, 143886 -recovered pasa_asmbl_24834.p1, internal, 144022, 144187 -recovered pasa_asmbl_24834.p1, internal, 144794, 144965 -recovered pasa_asmbl_24834.p1, internal, 145086, 145192 -recovered pasa_asmbl_24834.p1, internal, 145411, 145465 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.2447-T1 Valid prediction for Augustus_model.g3202.t1 Valid prediction for snap_scaffold_2-snap.2415-T1 Valid prediction for GeneMark_model.7646_t Valid prediction for GeneMark_model.7638_t Valid prediction for GeneMark_model.7636_t Valid prediction for CodingQuarry_transcript_28632-T1 Valid prediction for GeneMark_model.7648_t Valid prediction for GeneMark_model.7651_t Valid prediction for snap_scaffold_2-snap.2446-T1 Valid prediction for GeneMark_model.7658_t Valid prediction for GeneMark_model.7654_t Valid prediction for GlimmerHMM_glimmerT_4771-T1 Valid prediction for GeneMark_model.7685_t Couldn't classify 87130, 87140 Couldn't classify 87751, 87926 Sorry, prediction pasa_asmbl_23487.p1 fails validation. (TTT) CC 87130-87140 GT GGG (GGA) AG 87233-87358 GT AGG (GCG) AG 87465-87610 GT GGG (TGA) AG 87751-87926 CC CCC -recovered pasa_asmbl_23487.p1, internal, 87233, 87358 -recovered pasa_asmbl_23487.p1, internal, 87465, 87610 Valid prediction for snap_scaffold_2-snap.2411-T1 Valid prediction for snap_scaffold_2-snap.2450-T1 Valid prediction for snap_scaffold_2-snap.2432-T1 Valid prediction for GlimmerHMM_glimmerT_4794-T1 Valid prediction for snap_scaffold_2-snap.2430-T1 Valid prediction for snap_scaffold_2-snap.2442-T1 Couldn't classify 70855, 71205 Sorry, prediction pasa_asmbl_23492.p1 fails validation. (AGG) GG 70855-71205 GT AGG Valid prediction for snap_scaffold_2-snap.2409-T1 Valid prediction for GlimmerHMM_glimmerT_4782-T1 Valid prediction for snap_scaffold_2-snap.2413-T1 Valid prediction for GeneMark_model.7681_t Valid prediction for GlimmerHMM_glimmerT_4793-T1 Valid prediction for GeneMark_model.7666_t Valid prediction for GeneMark_model.7644_t Valid prediction for GeneMark_model.7633_t Valid prediction for GlimmerHMM_glimmerT_4764-T1 Valid prediction for snap_scaffold_2-snap.2425-T1 Valid prediction for Augustus_model.g3205.t1 Valid prediction for GeneMark_model.7631_t Valid prediction for GeneMark_model.7697_t Valid prediction for GlimmerHMM_glimmerT_4791-T1 Valid prediction for HiQ_model.g3216.t1 Valid prediction for GeneMark_model.7629_t Valid prediction for GeneMark_model.7693_t Valid prediction for Augustus_model.g3213.t1 Valid prediction for Augustus_model.g3219.t1 Valid prediction for GeneMark_model.7688_t Valid prediction for GlimmerHMM_glimmerT_4760-T1 Couldn't classify 88341, 89324 Sorry, prediction pasa_asmbl_23486.p1 fails validation. (CAG) AG 88341-89324 AG GGA Couldn't classify 89778, 89914 Couldn't classify 90036, 90858 Sorry, prediction pasa_asmbl_23485.p1 fails validation. (AGG) GC 89778-89914 GT AGG (GTC) AG 90036-90858 CC AGC Valid prediction for GeneMark_model.7678_t Valid prediction for snap_scaffold_2-snap.2420-T1 Valid prediction for snap_scaffold_2-snap.2458-T1 Valid prediction for snap_scaffold_2-snap.2452-T1 Valid prediction for GeneMark_model.7683_t Valid prediction for GlimmerHMM_glimmerT_4785-T1 Valid prediction for GeneMark_model.7649_t Valid prediction for Augustus_model.g3215.t1 Valid prediction for GlimmerHMM_glimmerT_4781-T1 Valid prediction for snap_scaffold_2-snap.2416-T1 Valid prediction for GlimmerHMM_glimmerT_4773-T1 Valid prediction for Augustus_model.g3220.t1 Valid prediction for GeneMark_model.7662_t Valid prediction for GeneMark_model.7700_t Valid prediction for GeneMark_model.7690_t Valid prediction for GeneMark_model.7668_t Valid prediction for snap_scaffold_2-snap.2427-T1 Couldn't classify 91003, 91387 Sorry, prediction pasa_asmbl_23484.p1 fails validation. (CCA) CT 91003-91387 GT CAG (AGC) AG 91548-91609 GT AGG (GAC) AG 92842-93003 GT AGG (TAT) AG 93193-93321 GT AGG (GTG) AG 93564-93731 CT GAC -recovered pasa_asmbl_23484.p1, terminal, 93564, 93731 -recovered pasa_asmbl_23484.p1, internal, 91548, 91609 -recovered pasa_asmbl_23484.p1, internal, 92842, 93003 -recovered pasa_asmbl_23484.p1, internal, 93193, 93321 Valid prediction for GlimmerHMM_glimmerT_4796-T1 Valid prediction for GeneMark_model.7692_t Valid prediction for GlimmerHMM_glimmerT_4761-T1 Valid prediction for Augustus_model.g3208.t1 Valid prediction for GlimmerHMM_glimmerT_4768-T1 Valid prediction for GeneMark_model.7660_t Valid prediction for snap_scaffold_2-snap.2440-T1 Valid prediction for snap_scaffold_2-snap.2459-T1 Valid prediction for Augustus_model.g3225.t1 Valid prediction for GeneMark_model.7627_t Valid prediction for pasa_asmbl_23493.p1 Valid prediction for snap_scaffold_2-snap.2456-T1 Valid prediction for GeneMark_model.7686_t Valid prediction for GeneMark_model.7689_t Valid prediction for GlimmerHMM_glimmerT_4789-T1 Valid prediction for snap_scaffold_2-snap.2433-T1 Valid prediction for GeneMark_model.7664_t Valid prediction for snap_scaffold_2-snap.2435-T1 Valid prediction for GeneMark_model.7680_t Valid prediction for GeneMark_model.7641_t Valid prediction for Augustus_model.g3217.t1 Valid prediction for Augustus_model.g3201.t1 Valid prediction for snap_scaffold_2-snap.2422-T1 Valid prediction for snap_scaffold_2-snap.2464-T1 Valid prediction for GeneMark_model.7657_t Valid prediction for GeneMark_model.7656_t Valid prediction for snap_scaffold_2-snap.2457-T1 Valid prediction for GeneMark_model.7635_t Valid prediction for snap_scaffold_2-snap.2441-T1 Valid prediction for snap_scaffold_2-snap.2444-T1 Valid prediction for GlimmerHMM_glimmerT_4795-T1 Valid prediction for GlimmerHMM_glimmerT_4787-T1 Valid prediction for GeneMark_model.7675_t Valid prediction for GlimmerHMM_glimmerT_4763-T1 Valid prediction for GlimmerHMM_glimmerT_4792-T1 Valid prediction for GlimmerHMM_glimmerT_4784-T1 Valid prediction for GeneMark_model.7625_t Valid prediction for snap_scaffold_2-snap.2455-T1 Valid prediction for snap_scaffold_2-snap.2461-T1 Valid prediction for Augustus_model.g3200.t1 Valid prediction for pasa_asmbl_23490.p1 Valid prediction for snap_scaffold_2-snap.2454-T1 Valid prediction for snap_scaffold_2-snap.2438-T1 Valid prediction for GeneMark_model.7672_t Couldn't classify 84181, 84219 Couldn't classify 85210, 85271 Sorry, prediction pasa_asmbl_24071.p1 fails validation. (TAC) TC 84181-84219 GT TGG (ATT) AG 84379-84512 GT GGG (GTA) AG 84615-84706 GT ACG (GTG) AG 85210-85271 CG GCC -recovered pasa_asmbl_24071.p1, internal, 84379, 84512 -recovered pasa_asmbl_24071.p1, internal, 84615, 84706 Valid prediction for GeneMark_model.7694_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10005, rend_intergenic: 3512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11228, rend_intergenic: 11025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14802, rend_intergenic: 11967 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15840, rend_intergenic: 15135 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18395, rend_intergenic: 16359 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22429, rend_intergenic: 19181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29783, rend_intergenic: 26697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47261, rend_intergenic: 45286 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52337, rend_intergenic: 48247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58741, rend_intergenic: 56960 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61913, rend_intergenic: 59999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75966, rend_intergenic: 73064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86396, rend_intergenic: 78551 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94794, rend_intergenic: 91418 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102930, rend_intergenic: 95640 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110364, rend_intergenic: 107710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111806, rend_intergenic: 110540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112800, rend_intergenic: 112002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123307, rend_intergenic: 112907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134079, rend_intergenic: 125396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 160802, rend_intergenic: 153507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194097, rend_intergenic: 183375 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221113, rend_intergenic: 212156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235380, rend_intergenic: 232693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238734, rend_intergenic: 235887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 244093 -exon list size: 1053 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 0.9 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.7 2.8 2.9 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.5 24.6 24.7 24.8 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.5 31.6 31.7 31.8 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.5 35.6 35.7 35.8 35.9 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.1 64.2 64.3 64.4 64.5 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.2 68.3 68.4 68.5 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.2 75.3 75.4 75.5 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.7 96.8 96.9 97.0 97.1 97.2 97.3 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 98.9 99.0 99.1 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 51 predictions from path traversal Error with prediction: snap lend_intergenic: 10005, rend_intergenic: 3512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 11228, rend_intergenic: 11025 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 14802, rend_intergenic: 11967 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15840, rend_intergenic: 15135 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18395, rend_intergenic: 16359 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22429, rend_intergenic: 19181 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29783, rend_intergenic: 26697 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47261, rend_intergenic: 45286 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52337, rend_intergenic: 48247 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58741, rend_intergenic: 56960 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 61913, rend_intergenic: 59999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75966, rend_intergenic: 73064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86396, rend_intergenic: 78551 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 94794, rend_intergenic: 91418 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102930, rend_intergenic: 95640 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110364, rend_intergenic: 107710 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 111806, rend_intergenic: 110540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112800, rend_intergenic: 112002 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123307, rend_intergenic: 112907 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134079, rend_intergenic: 125396 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 160802, rend_intergenic: 153507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194097, rend_intergenic: 183375 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221113, rend_intergenic: 212156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 235380, rend_intergenic: 232693 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238734, rend_intergenic: 235887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 20 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11095 -exon list size: 38 building trellis 2.5 5.0 7.5 10.0 12.5 15.0 17.5 20.0 22.5 25.0 27.5 30.0 32.5 35.0 37.5 40.0 42.5 45.0 47.5 50.0 52.5 55.0 57.5 60.0 62.5 65.0 67.5 70.0 72.5 75.0 77.5 80.0 82.5 85.0 87.5 90.0 92.5 95.0 97.5 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support