-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_1177293-1391576

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.5234_t
Valid prediction for GeneMark_model.5247_t
Couldn't classify 144166, 144379
Sorry, prediction pasa_asmbl_24207.p1 fails validation.
(TGT)	 GG	144166-144379	GT	AGG
(GAC)	 AG	144475-144692	GT	TGG
(GTG)	 AG	144983-145126	CA	AAC
-recovered pasa_asmbl_24207.p1, terminal, 144983, 145126
-recovered pasa_asmbl_24207.p1, internal, 144475, 144692
Valid prediction for snap_scaffold_2-snap.297-T1
Couldn't classify 199582, 199779
Sorry, prediction pasa_asmbl_24215.p1 fails validation.
(ATA)	 AG	199582-199779	GT	AGG
(GCC)	 AG	200305-200383	GT	TGG
(CGA)	 AG	203261-203340	GT	AGG
(ATC)	 AG	203921-203956	TG	GAT
-recovered pasa_asmbl_24215.p1, terminal, 203921, 203956
-recovered pasa_asmbl_24215.p1, internal, 199582, 199779
-recovered pasa_asmbl_24215.p1, internal, 200305, 200383
-recovered pasa_asmbl_24215.p1, internal, 203261, 203340
Valid prediction for Augustus_model.g2185.t1
Valid prediction for CodingQuarry_transcript_28395-T1
Valid prediction for HiQ_model.g2196.t1
Valid prediction for CodingQuarry_transcript_28393-T1
Valid prediction for GlimmerHMM_glimmerT_3261-T1
Valid prediction for GlimmerHMM_glimmerT_3263-T1
Valid prediction for GeneMark_model.5228_t
Valid prediction for snap_scaffold_2-snap.312-T1
Valid prediction for GeneMark_model.5231_t
Valid prediction for GlimmerHMM_glimmerT_3268-T1
Valid prediction for snap_scaffold_2-snap.287-T1
Valid prediction for GeneMark_model.5235_t
Couldn't classify 142649, 142769
Couldn't classify 145003, 145126
Sorry, prediction CodingQuarry_transcript_28396-T1 fails validation.
(ATG)	 GT	140712-140719	GT	AAG
(GTC)	 AG	141467-141581	GT	AGG
(GAG)	 AG	142186-142405	GT	TGG
(GCT)	 AG	142649-142769	TG	GCT
(TGC)	 GG	145003-145126	CA	AAC
-recovered CodingQuarry_transcript_28396-T1, initial, 140712, 140719
-recovered CodingQuarry_transcript_28396-T1, internal, 141467, 141581
-recovered CodingQuarry_transcript_28396-T1, internal, 142186, 142405
Valid prediction for GeneMark_model.5230_t
Valid prediction for GeneMark_model.5263_t
Valid prediction for pasa_asmbl_24197.p1
Valid prediction for GeneMark_model.5257_t
Valid prediction for GlimmerHMM_glimmerT_3247-T1
Valid prediction for GeneMark_model.5249_t
Valid prediction for snap_scaffold_2-snap.289-T1
Valid prediction for GeneMark_model.5280_t
Valid prediction for snap_scaffold_2-snap.314-T1
Valid prediction for GlimmerHMM_glimmerT_3255-T1
Valid prediction for GlimmerHMM_glimmerT_3250-T1
Valid prediction for GlimmerHMM_glimmerT_3260-T1
Valid prediction for GlimmerHMM_glimmerT_3249-T1
Valid prediction for snap_scaffold_2-snap.278-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for Augustus_model.g2189.t1
Valid prediction for GlimmerHMM_glimmerT_3264-T1
Valid prediction for GeneMark_model.5240_t
Valid prediction for snap_scaffold_2-snap.308-T1
Valid prediction for snap_scaffold_2-snap.271-T1
Valid prediction for GlimmerHMM_glimmerT_3266-T1
Valid prediction for GeneMark_model.5266_t
Valid prediction for GeneMark_model.5267_t
Valid prediction for GlimmerHMM_glimmerT_3252-T1
Valid prediction for Augustus_model.g2187.t1
Valid prediction for Augustus_model.g2198.t1
Valid prediction for GeneMark_model.5232_t
Valid prediction for GlimmerHMM_glimmerT_3237-T1
Valid prediction for GlimmerHMM_glimmerT_3239-T1
Valid prediction for GeneMark_model.5250_t
Valid prediction for GeneMark_model.5252_t
Valid prediction for GeneMark_model.5264_t
Valid prediction for GlimmerHMM_glimmerT_3257-T1
Valid prediction for snap_scaffold_2-snap.300-T1
Valid prediction for snap_scaffold_2-snap.304-T1
Valid prediction for snap_scaffold_2-snap.281-T1
Valid prediction for GlimmerHMM_glimmerT_3269-T1
Valid prediction for snap_scaffold_2-snap.302-T1
Valid prediction for Augustus_model.g2199.t1
Valid prediction for GeneMark_model.5272_t
Valid prediction for Augustus_model.g2190.t1
Valid prediction for snap_scaffold_2-snap.273-T1
Valid prediction for GeneMark_model.5276_t
Valid prediction for snap_scaffold_2-snap.307-T1
Couldn't classify 141467, 141638
Sorry, prediction pasa_asmbl_24205.p1 fails validation.
(ATG)	 TG	138342-138646	GT	AGG
(ACC)	 AG	139465-139712	GT	AGG
(CTG)	 AG	140031-140077	GT	AGG
(GTT)	 AG	140173-140376	GT	AGG
(TGC)	 AG	140628-140719	GT	AAG
(GTC)	 AG	141467-141638	AC	TGA
-recovered pasa_asmbl_24205.p1, initial, 138342, 138646
-recovered pasa_asmbl_24205.p1, internal, 139465, 139712
-recovered pasa_asmbl_24205.p1, internal, 140031, 140077
-recovered pasa_asmbl_24205.p1, internal, 140173, 140376
-recovered pasa_asmbl_24205.p1, internal, 140628, 140719
Valid prediction for CodingQuarry_transcript_28394-T1
Valid prediction for snap_scaffold_2-snap.311-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.267-T1
Valid prediction for GeneMark_model.5274_t
Valid prediction for GeneMark_model.5259_t
Valid prediction for GlimmerHMM_glimmerT_3244-T1
Valid prediction for snap_scaffold_2-snap.298-T1
Valid prediction for GlimmerHMM_glimmerT_3256-T1
Valid prediction for GeneMark_model.5265_t
Couldn't classify 103579, 103698
Couldn't classify 106073, 106083
Sorry, prediction pasa_asmbl_24196.p1 fails validation.
(CAG)	 TC	103579-103698	GT	CAG
(GTC)	 AG	105224-105334	GT	AGG
(GAG)	 AG	105573-105729	GT	CGG
(CTG)	 AG	106073-106083	CC	GTC
-recovered pasa_asmbl_24196.p1, internal, 105224, 105334
-recovered pasa_asmbl_24196.p1, internal, 105573, 105729
Valid prediction for HiQ_model.g2191.t1
Valid prediction for GeneMark_model.5279_t
Valid prediction for snap_scaffold_2-snap.303-T1
Valid prediction for GlimmerHMM_glimmerT_3267-T1
Valid prediction for GeneMark_model.5261_t
Valid prediction for snap_scaffold_2-snap.291-T1
Valid prediction for snap_scaffold_2-snap.315-T1
Valid prediction for snap_scaffold_2-snap.295-T1
Couldn't classify 83734, 83796
Sorry, prediction pasa_asmbl_24194.p1 fails validation.
(TAT)	 TG	83734-83796	GT	CTG
(GTG)	 AG	83989-84105	GT	CGG
(TGT)	 AG	85326-85382	GT	TGG
(GTG)	 AG	85734-85856	GT	AGG
(CGC)	 AG	86062-86217	GT	AGG
(CAA)	 AG	87187-87267	CA	AAC
-recovered pasa_asmbl_24194.p1, terminal, 87187, 87267
-recovered pasa_asmbl_24194.p1, internal, 83989, 84105
-recovered pasa_asmbl_24194.p1, internal, 85326, 85382
-recovered pasa_asmbl_24194.p1, internal, 85734, 85856
-recovered pasa_asmbl_24194.p1, internal, 86062, 86217
Valid prediction for GeneMark_model.5244_t
Valid prediction for GeneMark_model.5253_t
Valid prediction for GlimmerHMM_glimmerT_3253-T1
Valid prediction for Augustus_model.g2186.t1
Valid prediction for GlimmerHMM_glimmerT_3259-T1
Valid prediction for CodingQuarry_transcript_28397-T1
Valid prediction for Augustus_model.g2194.t1
Valid prediction for snap_scaffold_2-snap.299-T1
Valid prediction for GlimmerHMM_glimmerT_3258-T1
Valid prediction for GeneMark_model.5269_t
Couldn't classify 133216, 133632
Sorry, prediction pasa_asmbl_24200.p2 fails validation.
(ATG)	 AC	133216-133632	AT	ACA
Valid prediction for GeneMark_model.5245_t
Valid prediction for CodingQuarry_transcript_28392-T1
Valid prediction for GlimmerHMM_glimmerT_3235-T1
Valid prediction for Augustus_model.g2183.t1
Valid prediction for snap_scaffold_2-snap.293-T1
Valid prediction for Augustus_model.g2193.t1
Valid prediction for Augustus_model.g2192.t1
Valid prediction for GeneMark_model.5242_t
Valid prediction for GlimmerHMM_glimmerT_3245-T1
Valid prediction for snap_scaffold_2-snap.317-T1
Valid prediction for snap_scaffold_2-snap.309-T1
Valid prediction for GeneMark_model.5255_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.274-T1
Valid prediction for GeneMark_model.5237_t
Valid prediction for snap_scaffold_2-snap.294-T1
Valid prediction for GlimmerHMM_glimmerT_3240-T1
Valid prediction for GeneMark_model.5278_t
Valid prediction for Augustus_model.g2184.t1
Valid prediction for snap_scaffold_2-snap.285-T1
Valid prediction for GlimmerHMM_glimmerT_3238-T1
Valid prediction for GeneMark_model.5243_t
Valid prediction for Augustus_model.g2195.t1
Valid prediction for snap_scaffold_2-snap.266-T1
Valid prediction for GlimmerHMM_glimmerT_3234-T1
Valid prediction for GlimmerHMM_glimmerT_3242-T1
Valid prediction for GeneMark_model.5275_t
Valid prediction for snap_scaffold_2-snap.286-T1
Valid prediction for GeneMark_model.5251_t
Valid prediction for Augustus_model.g2188.t1
Valid prediction for GeneMark_model.5229_t
Valid prediction for snap_scaffold_2-snap.277-T1
Sorry, intron length (7) is less than minimum required (10)
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g2197.t1
Valid prediction for GeneMark_model.5227_t
Valid prediction for snap_scaffold_2-snap.270-T1
Valid prediction for GeneMark_model.5273_t
Valid prediction for GlimmerHMM_glimmerT_3248-T1
Valid prediction for GeneMark_model.5262_t
Valid prediction for GlimmerHMM_glimmerT_3251-T1
Valid prediction for GeneMark_model.5238_t
Valid prediction for snap_scaffold_2-snap.313-T1
Valid prediction for GlimmerHMM_glimmerT_3254-T1
Valid prediction for GeneMark_model.5233_t
Valid prediction for snap_scaffold_2-snap.272-T1
Valid prediction for snap_scaffold_2-snap.283-T1
Valid prediction for GeneMark_model.5248_t
Valid prediction for snap_scaffold_2-snap.305-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.269-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.5258_t
Valid prediction for GeneMark_model.5241_t
Valid prediction for snap_scaffold_2-snap.296-T1
Valid prediction for GeneMark_model.5239_t
Valid prediction for snap_scaffold_2-snap.279-T1
Valid prediction for snap_scaffold_2-snap.290-T1
Valid prediction for snap_scaffold_2-snap.301-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.268-T1
Valid prediction for GlimmerHMM_glimmerT_3241-T1
Valid prediction for snap_scaffold_2-snap.288-T1
Valid prediction for GlimmerHMM_glimmerT_3265-T1
Valid prediction for snap_scaffold_2-snap.276-T1
Valid prediction for snap_scaffold_2-snap.310-T1
Valid prediction for snap_scaffold_2-snap.316-T1
Valid prediction for snap_scaffold_2-snap.280-T1
Valid prediction for GeneMark_model.5271_t
Valid prediction for GeneMark_model.5260_t
Valid prediction for snap_scaffold_2-snap.284-T1
Valid prediction for snap_scaffold_2-snap.265-T1
Valid prediction for GlimmerHMM_glimmerT_3233-T1
Valid prediction for snap_scaffold_2-snap.275-T1
Valid prediction for GeneMark_model.5254_t
Valid prediction for GeneMark_model.5256_t
Valid prediction for snap_scaffold_2-snap.282-T1
Couldn't classify 36085, 36189
Sorry, prediction pasa_asmbl_22870.p1 fails validation.
(ATG)	 CG	32236-32296	GT	AAG
(AGA)	 AG	32908-33047	GT	AGG
(CTC)	 AG	33148-33201	GT	AGG
(GTT)	 AG	33710-33775	GT	AGG
(GCA)	 AG	34320-34365	GT	AGG
(TGT)	 AG	35241-35308	GT	AGG
(GAG)	 AG	35656-35738	GT	AAG
(GGG)	 AG	35832-35874	GT	AGG
(ACT)	 AG	36085-36189	TA	GGT
-recovered pasa_asmbl_22870.p1, initial, 32236, 32296
-recovered pasa_asmbl_22870.p1, internal, 32908, 33047
-recovered pasa_asmbl_22870.p1, internal, 33148, 33201
-recovered pasa_asmbl_22870.p1, internal, 33710, 33775
-recovered pasa_asmbl_22870.p1, internal, 34320, 34365
-recovered pasa_asmbl_22870.p1, internal, 35241, 35308
-recovered pasa_asmbl_22870.p1, internal, 35656, 35738
-recovered pasa_asmbl_22870.p1, internal, 35832, 35874
Valid prediction for GlimmerHMM_glimmerT_3243-T1
Valid prediction for snap_scaffold_2-snap.292-T1
Couldn't classify 50369, 50406
Sorry, prediction pasa_asmbl_22867.p1 fails validation.
(GAG)	 AG	50369-50406	GT	AGG
(CCT)	 AG	51279-51426	GT	TGG
(ACG)	 AG	51686-51782	GT	GGG
(GTG)	 AG	51895-52091	GT	AGG
(GAG)	 AG	52474-52570	GT	AGG
(AAG)	 AG	52865-52935	CC	GAC
-recovered pasa_asmbl_22867.p1, terminal, 52865, 52935
-recovered pasa_asmbl_22867.p1, internal, 50369, 50406
-recovered pasa_asmbl_22867.p1, internal, 51279, 51426
-recovered pasa_asmbl_22867.p1, internal, 51686, 51782
-recovered pasa_asmbl_22867.p1, internal, 51895, 52091
-recovered pasa_asmbl_22867.p1, internal, 52474, 52570
Valid prediction for snap_scaffold_2-snap.306-T1
Valid prediction for GeneMark_model.5277_t
Valid prediction for GeneMark_model.5268_t
Valid prediction for GlimmerHMM_glimmerT_3236-T1
Valid prediction for GlimmerHMM_glimmerT_3262-T1
Valid prediction for GlimmerHMM_glimmerT_3246-T1
Valid prediction for GeneMark_model.5246_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17294, rend_intergenic: 9591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25452, rend_intergenic: 20370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29692, rend_intergenic: 27721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37715, rend_intergenic: 32710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49919, rend_intergenic: 37728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51676, rend_intergenic: 50498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59165, rend_intergenic: 51709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62269, rend_intergenic: 59590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87267, rend_intergenic: 62299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92407, rend_intergenic: 91616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95823, rend_intergenic: 93422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103809, rend_intergenic: 103212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107232, rend_intergenic: 104453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109217, rend_intergenic: 107388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113927, rend_intergenic: 109969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120124, rend_intergenic: 114234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126093, rend_intergenic: 125320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129621, rend_intergenic: 126813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145592, rend_intergenic: 138342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157931, rend_intergenic: 154920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179867, rend_intergenic: 160496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184503, rend_intergenic: 183522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186267, rend_intergenic: 184661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189902, rend_intergenic: 186833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191649, rend_intergenic: 190298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203856, rend_intergenic: 203058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 214284
-exon list size: 1010


building trellis

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26.1    
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26.9    
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31.0    
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31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
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32.6    
32.7    
32.8    
32.9    
33.0    
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33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
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35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
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37.4    
37.5    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
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38.3    
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38.6    
38.7    
38.8    
38.9    
39.0    
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39.8    
39.9    
40.0    
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40.7    
40.8    
40.9    
41.0    
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41.6    
41.7    
41.8    
41.9    
42.0    
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42.2    
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42.6    
42.7    
42.8    
42.9    
43.0    
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43.2    
43.3    
43.4    
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43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
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45.6    
45.7    
45.8    
45.8    
45.9    
46.0    
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46.7    
46.8    
46.9    
47.0    
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47.7    
47.8    
47.9    
48.0    
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48.3    
48.4    
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48.6    
48.7    
48.8    
48.9    
49.0    
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49.2    
49.3    
49.4    
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49.6    
49.7    
49.8    
49.9    
50.0    
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50.7    
50.8    
50.9    
51.0    
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51.7    
51.8    
51.9    
52.0    
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52.2    
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52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
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85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
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87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 17294, rend_intergenic: 9591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 25452, rend_intergenic: 20370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29692, rend_intergenic: 27721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37715, rend_intergenic: 32710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49919, rend_intergenic: 37728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51676, rend_intergenic: 50498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59165, rend_intergenic: 51709  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62269, rend_intergenic: 59590  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87267, rend_intergenic: 62299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92407, rend_intergenic: 91616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95823, rend_intergenic: 93422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 103809, rend_intergenic: 103212  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107232, rend_intergenic: 104453  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109217, rend_intergenic: 107388  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113927, rend_intergenic: 109969  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120124, rend_intergenic: 114234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126093, rend_intergenic: 125320  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129621, rend_intergenic: 126813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145592, rend_intergenic: 138342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157931, rend_intergenic: 154920  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179867, rend_intergenic: 160496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184503, rend_intergenic: 183522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186267, rend_intergenic: 184661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189902, rend_intergenic: 186833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191649, rend_intergenic: 190298  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203856, rend_intergenic: 203058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 31 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 203957 - 214284
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support