-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2/scaffold_2_1-202121

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.4974_t
Valid prediction for snap_scaffold_2-snap.37-T1
Valid prediction for GlimmerHMM_glimmerT_3057-T1
Valid prediction for GeneMark_model.4937_t
Valid prediction for snap_scaffold_2-snap.41-T1
Valid prediction for Augustus_model.g2080.t1
Valid prediction for GeneMark_model.4977_t
Valid prediction for snap_scaffold_2-snap.31-T1
Valid prediction for Augustus_model.g2085.t1
Valid prediction for snap_scaffold_2-snap.10-T1
Valid prediction for CodingQuarry_transcript_28362-T1
Valid prediction for GlimmerHMM_glimmerT_3075-T1
Valid prediction for CodingQuarry_transcript_28350-T1
Valid prediction for snap_scaffold_2-snap.26-T1
Valid prediction for GlimmerHMM_glimmerT_3058-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g2088.t1
Valid prediction for snap_scaffold_2-snap.13-T1
Valid prediction for snap_scaffold_2-snap.46-T1
Valid prediction for GlimmerHMM_glimmerT_3063-T1
Valid prediction for snap_scaffold_2-snap.5-T1
Valid prediction for GeneMark_model.4936_t
Valid prediction for GeneMark_model.4975_t
Valid prediction for GeneMark_model.4964_t
Valid prediction for GlimmerHMM_glimmerT_3068-T1
Valid prediction for GeneMark_model.4962_t
Valid prediction for CodingQuarry_transcript_28358-T1
Couldn't classify 103544, 103672
Couldn't classify 103709, 103942
Sorry, prediction CodingQuarry_transcript_28355-T1 fails validation.
(ATG)	 AG	103421-103453	GT	AGG
(AAC)	 AG	103544-103672	CT	CAC
(CTC)	 CC	103709-103942	AC	GAA
-recovered CodingQuarry_transcript_28355-T1, initial, 103421, 103453
-recovered CodingQuarry_transcript_28355-T1, internal, 103421, 103453
Valid prediction for GlimmerHMM_glimmerT_3079-T1
Valid prediction for snap_scaffold_2-snap.6-T1
Valid prediction for Augustus_model.g2078.t1
Valid prediction for GlimmerHMM_glimmerT_3065-T1
Couldn't classify 115633, 115672
Couldn't classify 117427, 117616
Sorry, prediction pasa_asmbl_24092.p1 fails validation.
(GAA)	 AG	115633-115672	GT	AGG
(GAA)	 AG	116268-116475	GT	CGG
(CTT)	 AG	117427-117616	TC	GAT
-recovered pasa_asmbl_24092.p1, internal, 115633, 115672
-recovered pasa_asmbl_24092.p1, internal, 116268, 116475
Valid prediction for GeneMark_model.4958_t
Couldn't classify 150903, 151140
Couldn't classify 153938, 153977
Sorry, prediction pasa_asmbl_24093.p1 fails validation.
(GAG)	 CA	150903-151140	GT	CAG
(TCA)	 AG	151536-151646	GT	TGG
(ATG)	 AG	152463-152699	GT	AGG
(GTA)	 AG	152967-153091	GT	AGG
(ATG)	 AG	153399-153496	GT	AGG
(GCC)	 AG	153938-153977	TG	CCT
add_exon() Sorry, pasa_asmbl_24093.p1 152463-152699-initial-1 is invalid.
-recovered pasa_asmbl_24093.p1, initial, 152463, 152699
-recovered pasa_asmbl_24093.p1, initial, 153399, 153496
-recovered pasa_asmbl_24093.p1, internal, 151536, 151646
-recovered pasa_asmbl_24093.p1, internal, 152463, 152699
-recovered pasa_asmbl_24093.p1, internal, 152967, 153091
-recovered pasa_asmbl_24093.p1, internal, 153399, 153496
Valid prediction for GlimmerHMM_glimmerT_3077-T1
Valid prediction for GeneMark_model.4956_t
Valid prediction for Augustus_model.g2093.t1
Valid prediction for GeneMark_model.4944_t
Valid prediction for GeneMark_model.4952_t
Valid prediction for GeneMark_model.4951_t
Valid prediction for GeneMark_model.4982_t
Couldn't classify 33463, 33552
Sorry, prediction pasa_asmbl_24083.p1 fails validation.
(ATG)	 TG	32953-33064	GT	AGG
(AGG)	 AG	33154-33281	GT	AGG
(GCA)	 AG	33463-33552	GG	CAG
-recovered pasa_asmbl_24083.p1, initial, 32953, 33064
-recovered pasa_asmbl_24083.p1, internal, 33154, 33281
Valid prediction for Augustus_model.g2087.t1
Valid prediction for GeneMark_model.4947_t
Valid prediction for snap_scaffold_2-snap.17-T1
Valid prediction for GeneMark_model.4942_t
Valid prediction for GeneMark_model.4939_t
Valid prediction for GlimmerHMM_glimmerT_3073-T1
Valid prediction for GeneMark_model.4945_t
Couldn't classify 33463, 33555
Sorry, prediction pasa_asmbl_24079.p1 fails validation.
(ATG)	 CG	29794-29877	GT	AAG
(AAT)	 AG	30004-30116	GT	AGG
(GTG)	 AG	30653-30794	GT	AGG
(GGT)	 AG	30939-31080	GT	GGG
(ATC)	 AG	31533-31692	GT	AGG
(GAA)	 AG	32150-32349	GT	AGG
(AGT)	 AG	32936-33064	GT	AGG
(AGG)	 AG	33154-33281	GT	AGG
(GCA)	 AG	33463-33555	CA	GTC
-recovered pasa_asmbl_24079.p1, initial, 29794, 29877
add_exon() Sorry, pasa_asmbl_24079.p1 32150-32349-terminal-2 is invalid.
-recovered pasa_asmbl_24079.p1, terminal, 32150, 32349
-recovered pasa_asmbl_24079.p1, internal, 30004, 30116
-recovered pasa_asmbl_24079.p1, internal, 30653, 30794
-recovered pasa_asmbl_24079.p1, internal, 30939, 31080
-recovered pasa_asmbl_24079.p1, internal, 31533, 31692
-recovered pasa_asmbl_24079.p1, internal, 32150, 32349
-recovered pasa_asmbl_24079.p1, internal, 32936, 33064
-recovered pasa_asmbl_24079.p1, internal, 33154, 33281
Couldn't classify 1623, 1696
Sorry, prediction snap_scaffold_2-snap.3-T1 fails validation.
(GTC)	 AG	1623-1696	GT	AGG
(ATA)	 AG	2891-3243	CA	GAC
-recovered snap_scaffold_2-snap.3-T1, terminal, 2891, 3243
-recovered snap_scaffold_2-snap.3-T1, internal, 1623, 1696
Valid prediction for snap_scaffold_2-snap.9-T1
Valid prediction for GeneMark_model.4961_t
Valid prediction for GeneMark_model.4950_t
Valid prediction for pasa_asmbl_24101.p1
Valid prediction for GlimmerHMM_glimmerT_3061-T1
Valid prediction for snap_scaffold_2-snap.22-T1
Valid prediction for HiQ_model.g2091.t1
Valid prediction for GlimmerHMM_glimmerT_3072-T1
Valid prediction for snap_scaffold_2-snap.38-T1
Valid prediction for CodingQuarry_transcript_28352-T1
Valid prediction for snap_scaffold_2-snap.19-T1
Valid prediction for Augustus_model.g2086.t1
Couldn't classify 101303, 101621
Sorry, prediction pasa_asmbl_24089.p1 fails validation.
(TTA)	 CC	101303-101621	GT	ATG
(GCA)	 AG	103328-103453	GT	AGG
(AAC)	 AG	103544-104511	TG	GAT
-recovered pasa_asmbl_24089.p1, terminal, 103544, 104511
-recovered pasa_asmbl_24089.p1, internal, 103328, 103453
Valid prediction for GlimmerHMM_glimmerT_3071-T1
Valid prediction for GlimmerHMM_glimmerT_3074-T1
Valid prediction for snap_scaffold_2-snap.7-T1
Valid prediction for CodingQuarry_transcript_28351-T1
Valid prediction for snap_scaffold_2-snap.40-T1
Valid prediction for GeneMark_model.4968_t
Couldn't classify 103544, 103672
Couldn't classify 103697, 103942
Sorry, prediction CodingQuarry_transcript_28357-T1 fails validation.
(ATG)	 AG	103421-103453	GT	AGG
(AAC)	 AG	103544-103672	CT	CAC
(CTC)	 CC	103697-103942	AC	GAA
-recovered CodingQuarry_transcript_28357-T1, initial, 103421, 103453
-recovered CodingQuarry_transcript_28357-T1, internal, 103421, 103453
Valid prediction for GlimmerHMM_glimmerT_3066-T1
Valid prediction for snap_scaffold_2-snap.35-T1
Valid prediction for CodingQuarry_transcript_28360-T1
Valid prediction for Augustus_model.g2077.t1
Valid prediction for snap_scaffold_2-snap.28-T1
Valid prediction for GeneMark_model.4973_t
Valid prediction for GlimmerHMM_glimmerT_3069-T1
Valid prediction for Augustus_model.g2089.t1
Valid prediction for GlimmerHMM_glimmerT_3070-T1
Valid prediction for CodingQuarry_transcript_28359-T1
Couldn't classify 1624, 1696
Couldn't classify 4261, 4439
Sorry, prediction pasa_asmbl_24075.p2 fails validation.
(TCC)	 GG	1624-1696	GT	AGG
(ATA)	 AG	2891-3145	GC	AGG
(ATG)	 AG	4261-4439	CA	TCC
-recovered pasa_asmbl_24075.p2, internal, 2891, 3145
Valid prediction for GeneMark_model.4969_t
Valid prediction for Augustus_model.g2084.t1
Valid prediction for pasa_asmbl_24099.p1
Valid prediction for Augustus_model.g2090.t1
Valid prediction for pasa_asmbl_24095.p1
Couldn't classify 142810, 142994
Couldn't classify 149124, 149236
Sorry, prediction pasa_asmbl_25485.p1 fails validation.
(GTC)	 AT	142810-142994	GT	GGG
(GTT)	 AG	143998-144182	GT	AGG
(GTC)	 AG	144261-144584	GT	CTG
(CTC)	 AG	145305-145501	GT	AGG
(TCC)	 AG	145868-146085	GT	GGG
(GTA)	 AG	147585-147775	GT	CGG
(GAG)	 AG	149124-149236	GA	TGG
-recovered pasa_asmbl_25485.p1, internal, 143998, 144182
-recovered pasa_asmbl_25485.p1, internal, 144261, 144584
-recovered pasa_asmbl_25485.p1, internal, 145305, 145501
-recovered pasa_asmbl_25485.p1, internal, 145868, 146085
-recovered pasa_asmbl_25485.p1, internal, 147585, 147775
Valid prediction for GeneMark_model.4979_t
Valid prediction for snap_scaffold_2-snap.32-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for HiQ_model.g2083.t1
Valid prediction for snap_scaffold_2-snap.18-T1
Valid prediction for GeneMark_model.4955_t
Valid prediction for GeneMark_model.4949_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2-snap.34-T1
Valid prediction for GeneMark_model.4954_t
Valid prediction for snap_scaffold_2-snap.11-T1
Valid prediction for pasa_asmbl_22815.p1
Valid prediction for snap_scaffold_2-snap.4-T1
Valid prediction for GeneMark_model.4940_t
Valid prediction for snap_scaffold_2-snap.15-T1
Valid prediction for snap_scaffold_2-snap.39-T1
Valid prediction for snap_scaffold_2-snap.12-T1
Valid prediction for Augustus_model.g2094.t1
Valid prediction for GeneMark_model.4960_t
Valid prediction for GeneMark_model.4965_t
Valid prediction for CodingQuarry_transcript_28346-T1
Valid prediction for CodingQuarry_transcript_28361-T1
Valid prediction for pasa_asmbl_22810.p1
Valid prediction for snap_scaffold_2-snap.24-T1
Valid prediction for GeneMark_model.4981_t
Valid prediction for GlimmerHMM_glimmerT_3062-T1
Valid prediction for GlimmerHMM_glimmerT_3056-T1
Valid prediction for GlimmerHMM_glimmerT_3081-T1
Valid prediction for Augustus_model.g2082.t1
Valid prediction for GeneMark_model.4970_t
Valid prediction for GeneMark_model.4966_t
Valid prediction for snap_scaffold_2-snap.33-T1
Valid prediction for snap_scaffold_2-snap.8-T1
Valid prediction for GlimmerHMM_glimmerT_3060-T1
Valid prediction for GlimmerHMM_glimmerT_3078-T1
Valid prediction for GeneMark_model.4943_t
Valid prediction for snap_scaffold_2-snap.2-T1
Valid prediction for CodingQuarry_transcript_28348-T1
Valid prediction for HiQ_model.g2095.t1
Valid prediction for CodingQuarry_transcript_28349-T1
Valid prediction for HiQ_model.g2079.t1
Valid prediction for CodingQuarry_transcript_28347-T1
Valid prediction for GeneMark_model.4941_t
Valid prediction for GeneMark_model.4948_t
Valid prediction for snap_scaffold_2-snap.16-T1
Valid prediction for snap_scaffold_2-snap.44-T1
Valid prediction for GeneMark_model.4959_t
Couldn't classify 193748, 194046
Couldn't classify 195371, 195458
Sorry, prediction pasa_asmbl_24021.p2 fails validation.
(CCA)	 CT	193748-194046	GT	AGG
(GTC)	 AG	195371-195458	AC	ACA
Valid prediction for pasa_asmbl_22817.p1
Valid prediction for snap_scaffold_2-snap.14-T1
Valid prediction for snap_scaffold_2-snap.29-T1
Valid prediction for snap_scaffold_2-snap.21-T1
Couldn't classify 201771, 201905
Sorry, prediction GeneMark_model.4935_t fails validation.
(ATG)	 CC	196224-196492	GT	GGG
(GAT)	 AG	196601-196633	GT	TGG
(GAT)	 AG	196691-196705	GT	GGG
(GAT)	 AG	196742-196828	GT	GGG
(GAT)	 AG	196865-196876	GT	GGG
(GAT)	 AG	196908-196955	GT	GAG
(GGA)	 AG	196976-196984	GT	GGG
(GAT)	 AG	197020-197034	GT	GGG
(GCA)	 AG	197071-197118	GT	GTG
(TGA)	 AG	197425-197443	GT	AGG
(GTG)	 AG	197590-197883	GT	CAG
(TTA)	 AG	198122-198451	GT	AGG
(GTC)	 AG	199017-199178	GT	GAG
(GCG)	 AG	199674-199792	GT	GAG
(AAG)	 AG	199823-200075	GT	TCG
(GCC)	 AG	200281-200459	GT	CTG
(GCT)	 AG	200481-200519	GT	CGG
(AGA)	 AG	201175-201275	GT	ATG
(TGT)	 AG	201561-201582	GT	TTG
(GCG)	 AG	201771-201905	GT	CAG
-recovered GeneMark_model.4935_t, initial, 196224, 196492
-recovered GeneMark_model.4935_t, internal, 196601, 196633
-recovered GeneMark_model.4935_t, internal, 196691, 196705
-recovered GeneMark_model.4935_t, internal, 196742, 196828
-recovered GeneMark_model.4935_t, internal, 196865, 196876
-recovered GeneMark_model.4935_t, internal, 196908, 196955
-recovered GeneMark_model.4935_t, internal, 196976, 196984
-recovered GeneMark_model.4935_t, internal, 197020, 197034
-recovered GeneMark_model.4935_t, internal, 197071, 197118
-recovered GeneMark_model.4935_t, internal, 197425, 197443
-recovered GeneMark_model.4935_t, internal, 197590, 197883
-recovered GeneMark_model.4935_t, internal, 198122, 198451
-recovered GeneMark_model.4935_t, internal, 199017, 199178
-recovered GeneMark_model.4935_t, internal, 199674, 199792
-recovered GeneMark_model.4935_t, internal, 199823, 200075
-recovered GeneMark_model.4935_t, internal, 200281, 200459
-recovered GeneMark_model.4935_t, internal, 200481, 200519
-recovered GeneMark_model.4935_t, internal, 201175, 201275
-recovered GeneMark_model.4935_t, internal, 201561, 201582
-recovered GeneMark_model.4935_t, internal, 201771, 201905
Valid prediction for pasa_asmbl_22808.p1
Valid prediction for GlimmerHMM_glimmerT_3067-T1
Valid prediction for GeneMark_model.4980_t
Valid prediction for snap_scaffold_2-snap.27-T1
Valid prediction for GeneMark_model.4976_t
Valid prediction for snap_scaffold_2-snap.20-T1
Valid prediction for GlimmerHMM_glimmerT_3082-T1
Valid prediction for GeneMark_model.4972_t
Valid prediction for snap_scaffold_2-snap.1-T1
Valid prediction for snap_scaffold_2-snap.43-T1
Valid prediction for GeneMark_model.4978_t
Valid prediction for GeneMark_model.4957_t
Valid prediction for GlimmerHMM_glimmerT_3064-T1
Valid prediction for GeneMark_model.4963_t
Valid prediction for GeneMark_model.4946_t
Valid prediction for GlimmerHMM_glimmerT_3059-T1
Valid prediction for snap_scaffold_2-snap.25-T1
Valid prediction for CodingQuarry_transcript_28363-T1
Valid prediction for GlimmerHMM_glimmerT_3080-T1
Valid prediction for HiQ_model.g2081.t1
Valid prediction for snap_scaffold_2-snap.23-T1
Valid prediction for HiQ_model.g2092.t1
Valid prediction for GeneMark_model.4953_t
Valid prediction for snap_scaffold_2-snap.36-T1
Valid prediction for GlimmerHMM_glimmerT_3076-T1
Valid prediction for snap_scaffold_2-snap.30-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_2-snap.42-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 148097, rend_intergenic: 148094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3318, rend_intergenic: 1623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11775, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28067, rend_intergenic: 18834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39466, rend_intergenic: 32237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59464, rend_intergenic: 44971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96610, rend_intergenic: 86245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104511, rend_intergenic: 100966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119577, rend_intergenic: 118234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124686, rend_intergenic: 119723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138375, rend_intergenic: 128444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144066, rend_intergenic: 138460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149362, rend_intergenic: 145786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150961, rend_intergenic: 150012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154196, rend_intergenic: 151502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170657, rend_intergenic: 163020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184715, rend_intergenic: 181811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202121
-exon list size: 738


building trellis

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29.9    
30.0    
30.1    
30.3    
30.4    
30.5    
30.7    
30.8    
30.9    
31.1    
31.2    
31.4    
31.5    
31.6    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.6    
32.7    
32.8    
33.0    
33.1    
33.2    
33.4    
33.5    
33.6    
33.8    
33.9    
34.1    
34.2    
34.3    
34.5    
34.6    
34.7    
34.9    
35.0    
35.1    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.1    
36.2    
36.4    
36.5    
36.6    
36.8    
36.9    
37.0    
37.2    
37.3    
37.4    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.1    
39.2    
39.3    
39.5    
39.6    
39.7    
39.9    
40.0    
40.1    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.1    
41.2    
41.4    
41.5    
41.6    
41.8    
41.9    
42.0    
42.2    
42.3    
42.4    
42.6    
42.7    
42.8    
43.0    
43.1    
43.2    
43.4    
43.5    
43.6    
43.8    
43.9    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.6    
46.8    
46.9    
47.0    
47.2    
47.3    
47.4    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.9    
50.0    
50.1    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.6    
52.7    
52.8    
53.0    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.1    
56.2    
56.4    
56.5    
56.6    
56.8    
56.9    
57.0    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
58.0    
58.1    
58.2    
58.4    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.7    
60.8    
60.9    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
63.0    
63.1    
63.2    
63.4    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.4    
68.5    
68.6    
68.8    
68.9    
69.1    
69.2    
69.3    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.1    
71.2    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.8    
73.9    
74.1    
74.2    
74.3    
74.5    
74.6    
74.7    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.1    
76.2    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.7    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.6    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.6    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.6    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 37 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 148097, rend_intergenic: 148094  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3318, rend_intergenic: 1623  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11775, rend_intergenic: 4184  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28067, rend_intergenic: 18834  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39466, rend_intergenic: 32237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59464, rend_intergenic: 44971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96610, rend_intergenic: 86245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104511, rend_intergenic: 100966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119577, rend_intergenic: 118234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124686, rend_intergenic: 119723  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138375, rend_intergenic: 128444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144066, rend_intergenic: 138460  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149362, rend_intergenic: 145786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150961, rend_intergenic: 150012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154196, rend_intergenic: 151502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170657, rend_intergenic: 163020  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184715, rend_intergenic: 181811  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support