-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1997

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1375, 1612
Sorry, prediction GeneMark_model.109932_t fails validation.
(ATG)	 AC	1062-1140	GT	GGG
(CCC)	 AG	1214-1282	GT	AGG
(GCG)	 AG	1375-1612	GT	ACG
-recovered GeneMark_model.109932_t, initial, 1062, 1140
-recovered GeneMark_model.109932_t, internal, 1214, 1282
-recovered GeneMark_model.109932_t, internal, 1375, 1612
Valid prediction for GlimmerHMM_glimmerT_62927-T1
Couldn't classify 54, 234
Sorry, prediction GeneMark_model.109931_t fails validation.
(CCT)	 AG	54-234	GT	TGG
(GGT)	 AG	272-298	GT	TTG
(AGA)	 AG	417-512	GC	GGG
(AGA)	 AG	535-583	CT	AAC
-recovered GeneMark_model.109931_t, terminal, 535, 583
-recovered GeneMark_model.109931_t, internal, 54, 234
-recovered GeneMark_model.109931_t, internal, 272, 298
-recovered GeneMark_model.109931_t, internal, 417, 512

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41905.t1
Valid prediction for snap_scaffold_1997-snap.1-T1
Valid prediction for snap_scaffold_1997-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1681
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support