-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1991

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 305, 330
Couldn't classify 1226, 1294
Sorry, prediction GeneMark_model.109926_t fails validation.
(GGG)	 AG	305-330	GT	CTG
(GGG)	 AG	513-545	GT	AGG
(ACG)	 AG	751-777	GT	TGG
(GGG)	 AG	810-866	GT	AGG
(GGA)	 AG	902-1081	GT	GGG
(AGG)	 AG	1150-1203	GT	AGG
(TCC)	 AG	1226-1294	GT	GGG
-recovered GeneMark_model.109926_t, internal, 305, 330
-recovered GeneMark_model.109926_t, internal, 513, 545
-recovered GeneMark_model.109926_t, internal, 751, 777
-recovered GeneMark_model.109926_t, internal, 810, 866
-recovered GeneMark_model.109926_t, internal, 902, 1081
-recovered GeneMark_model.109926_t, internal, 1150, 1203
-recovered GeneMark_model.109926_t, internal, 1226, 1294

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1685
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support