-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1990

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1063, 1143
Couldn't classify 1475, 1558
Sorry, prediction GeneMark_model.109925_t fails validation.
(ACA)	 AG	1063-1143	GT	TCG
(AGA)	 AG	1475-1558	GT	AAG
-recovered GeneMark_model.109925_t, internal, 1063, 1143
-recovered GeneMark_model.109925_t, internal, 1475, 1558
Valid prediction for snap_scaffold_1990-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 264, 361
Sorry, prediction snap_scaffold_1990-snap.1-T1 fails validation.
(CTC)	 AG	264-361	GT	ATG
(GGA)	 AG	1077-1174	CT	AAC
-recovered snap_scaffold_1990-snap.1-T1, terminal, 1077, 1174
-recovered snap_scaffold_1990-snap.1-T1, internal, 264, 361

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1686
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support