-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_199 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 85, 96 Sorry, prediction GeneMark_model.106911_t fails validation. (AGA) AG 85-96 GT GGG (AAG) AG 326-459 GT TAG (GTC) AG 528-690 GT GGG (GGG) AG 983-1075 GT GAG (TGT) AG 1125-1157 GT AGG (AAA) AG 1179-1187 GT AGG (GGC) AG 1228-1245 GT CAG (GGA) AG 1424-1435 GT AGG (AGA) AG 1476-1505 GT AGG (GGC) AG 1554-1661 GT CAG (GCT) AG 2527-2590 GG AGG -recovered GeneMark_model.106911_t, terminal, 1179, 1187 -recovered GeneMark_model.106911_t, terminal, 2527, 2590 -recovered GeneMark_model.106911_t, internal, 85, 96 -recovered GeneMark_model.106911_t, internal, 326, 459 -recovered GeneMark_model.106911_t, internal, 528, 690 -recovered GeneMark_model.106911_t, internal, 983, 1075 -recovered GeneMark_model.106911_t, internal, 1125, 1157 -recovered GeneMark_model.106911_t, internal, 1179, 1187 -recovered GeneMark_model.106911_t, internal, 1228, 1245 -recovered GeneMark_model.106911_t, internal, 1424, 1435 -recovered GeneMark_model.106911_t, internal, 1476, 1505 -recovered GeneMark_model.106911_t, internal, 1554, 1661 Couldn't classify 933, 1075 Sorry, prediction snap_scaffold_199-snap.2-T1 fails validation. (CGG) AG 933-1075 GT GAG (CAA) AG 1097-1183 GT GGG (GCT) AG 2527-2586 GT AGG (GTC) AG 7017-7127 GT CGG (ATT) AG 7524-7843 GT TTG (TAA) AG 9320-9396 AA GAA -recovered snap_scaffold_199-snap.2-T1, terminal, 9320, 9396 -recovered snap_scaffold_199-snap.2-T1, internal, 933, 1075 -recovered snap_scaffold_199-snap.2-T1, internal, 1097, 1183 -recovered snap_scaffold_199-snap.2-T1, internal, 2527, 2586 -recovered snap_scaffold_199-snap.2-T1, internal, 7017, 7127 -recovered snap_scaffold_199-snap.2-T1, internal, 7524, 7843 Valid prediction for Augustus_model.g40898.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 7227, 7358 Sorry, prediction GlimmerHMM_glimmerT_61494-T1 fails validation. (CTC) AG 7227-7358 GT AGG (GGG) AG 8212-8328 TT AAT -recovered GlimmerHMM_glimmerT_61494-T1, terminal, 8212, 8328 -recovered GlimmerHMM_glimmerT_61494-T1, internal, 7227, 7358 Couldn't classify 9165, 9315 Sorry, prediction snap_scaffold_199-snap.1-T1 fails validation. (ATG) TG 2886-3069 GT AGG (ATA) AG 3788-4084 GT GCG (ACC) AG 7255-7338 GT TGG (CCG) AG 8187-8265 GT AAG (TAG) AG 9165-9315 GT TGG -recovered snap_scaffold_199-snap.1-T1, initial, 2886, 3069 -recovered snap_scaffold_199-snap.1-T1, internal, 3788, 4084 -recovered snap_scaffold_199-snap.1-T1, internal, 7255, 7338 -recovered snap_scaffold_199-snap.1-T1, internal, 8187, 8265 -recovered snap_scaffold_199-snap.1-T1, internal, 9165, 9315 Couldn't classify 2128, 2271 Sorry, prediction GeneMark_model.106912_t fails validation. (TAG) AG 2128-2271 GT AAG (AGT) AG 2329-2472 GT GTG (TGG) AG 2501-2593 GT ATG (GAG) AG 2919-2927 GT AGG (AGG) AG 2949-2960 GT AGG (AGA) AG 2982-3032 GT AGG (AGG) AG 3061-3069 GT AGG (AGG) AG 3098-3112 GT CGG (AGG) AG 3136-3171 GT GAG (GAT) AG 3205-3213 GT GAG (GAG) AG 3235-3246 GT GAG (AGG) AG 3270-3299 GT GCG (AGG) AG 3332-3352 GT AAG (AAG) AG 3394-3420 GT GGG (GGA) AG 3835-3870 GT GGG (AAC) AG 3894-3956 GT GAG (AGG) AG 3989-4084 GT GCG (CAG) AG 4143-4176 CC AGC -recovered GeneMark_model.106912_t, terminal, 4143, 4176 -recovered GeneMark_model.106912_t, internal, 2128, 2271 -recovered GeneMark_model.106912_t, internal, 2329, 2472 -recovered GeneMark_model.106912_t, internal, 2501, 2593 -recovered GeneMark_model.106912_t, internal, 2919, 2927 -recovered GeneMark_model.106912_t, internal, 2949, 2960 -recovered GeneMark_model.106912_t, internal, 2982, 3032 -recovered GeneMark_model.106912_t, internal, 3061, 3069 -recovered GeneMark_model.106912_t, internal, 3098, 3112 -recovered GeneMark_model.106912_t, internal, 3136, 3171 -recovered GeneMark_model.106912_t, internal, 3205, 3213 -recovered GeneMark_model.106912_t, internal, 3235, 3246 -recovered GeneMark_model.106912_t, internal, 3270, 3299 -recovered GeneMark_model.106912_t, internal, 3332, 3352 -recovered GeneMark_model.106912_t, internal, 3394, 3420 -recovered GeneMark_model.106912_t, internal, 3835, 3870 -recovered GeneMark_model.106912_t, internal, 3894, 3956 -recovered GeneMark_model.106912_t, internal, 3989, 4084 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6976, rend_intergenic: 933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 9861 -exon list size: 86 building trellis 1.1 2.3 3.4 4.5 5.7 6.8 8.0 9.1 10.2 11.4 12.5 13.6 14.8 15.9 17.0 18.2 19.3 20.5 21.6 22.7 23.9 25.0 26.1 27.3 28.4 29.5 30.7 31.8 33.0 34.1 35.2 36.4 37.5 38.6 39.8 40.9 42.0 43.2 44.3 45.5 46.6 47.7 48.9 50.0 51.1 52.3 53.4 54.5 55.7 56.8 58.0 59.1 60.2 61.4 62.5 63.6 64.8 65.9 67.0 68.2 69.3 70.5 71.6 72.7 73.9 75.0 76.1 77.3 78.4 79.5 80.7 81.8 83.0 84.1 85.2 86.4 87.5 88.6 89.8 90.9 92.0 93.2 94.3 95.5 96.6 97.7 98.9 -found 2 predictions from path traversal Error with prediction: snap lend_intergenic: 6976, rend_intergenic: 933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support