-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1988

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 81, 157
Couldn't classify 1083, 1175
Sorry, prediction snap_scaffold_1988-snap.1-T1 fails validation.
(GCC)	 AG	81-157	GT	AGG
(GTT)	 AG	346-424	GT	AGG
(GAG)	 AG	559-668	GT	AGG
(GTT)	 AG	910-997	GT	AGG
(AAC)	 AG	1083-1175	GT	TGG
-recovered snap_scaffold_1988-snap.1-T1, internal, 81, 157
-recovered snap_scaffold_1988-snap.1-T1, internal, 346, 424
-recovered snap_scaffold_1988-snap.1-T1, internal, 559, 668
-recovered snap_scaffold_1988-snap.1-T1, internal, 910, 997
-recovered snap_scaffold_1988-snap.1-T1, internal, 1083, 1175
Couldn't classify 81, 157
Couldn't classify 1083, 1175
Sorry, prediction Augustus_model.g41902.t1 fails validation.
(GCC)	 AG	81-157	GT	AGG
(GTT)	 AG	346-424	GT	AGG
(GAG)	 AG	559-668	GT	AGG
(GTT)	 AG	910-997	GT	AGG
(AAC)	 AG	1083-1175	GT	TGG
-recovered Augustus_model.g41902.t1, internal, 81, 157
-recovered Augustus_model.g41902.t1, internal, 346, 424
-recovered Augustus_model.g41902.t1, internal, 559, 668
-recovered Augustus_model.g41902.t1, internal, 910, 997
-recovered Augustus_model.g41902.t1, internal, 1083, 1175
Couldn't classify 346, 424
Sorry, prediction GlimmerHMM_glimmerT_62923-T1 fails validation.
(GTT)	 AG	346-424	GT	AGG
(GAG)	 AG	559-648	GT	ATG
(CTG)	 AG	956-1030	CG	AGC
-recovered GlimmerHMM_glimmerT_62923-T1, terminal, 956, 1030
-recovered GlimmerHMM_glimmerT_62923-T1, internal, 346, 424
-recovered GlimmerHMM_glimmerT_62923-T1, internal, 559, 648
Couldn't classify 81, 157
Couldn't classify 1083, 1175
Sorry, prediction GeneMark_model.109924_t fails validation.
(GCC)	 AG	81-157	GT	AGG
(GTT)	 AG	346-424	GT	AGG
(GAG)	 AG	559-668	GT	AGG
(ACC)	 AG	919-997	GT	AGG
(AAC)	 AG	1083-1175	GT	TGG
-recovered GeneMark_model.109924_t, internal, 81, 157
-recovered GeneMark_model.109924_t, internal, 346, 424
-recovered GeneMark_model.109924_t, internal, 559, 668
-recovered GeneMark_model.109924_t, internal, 919, 997
-recovered GeneMark_model.109924_t, internal, 1083, 1175

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1688
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support