-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1985

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62922-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62922-T1 908-1121-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 397, 449
Couldn't classify 1411, 1425
Sorry, prediction GeneMark_model.109921_t fails validation.
(GAG)	 AG	397-449	GC	AGG
(GAC)	 AG	898-1016	GT	AGG
(TGT)	 AG	1238-1246	GT	AGG
(TGT)	 AG	1284-1292	GT	AGG
(TGT)	 AG	1330-1338	GT	AGG
(GTG)	 AG	1368-1378	GT	GTG
(TGT)	 AG	1411-1425	GT	GAG
-recovered GeneMark_model.109921_t, internal, 397, 449
-recovered GeneMark_model.109921_t, internal, 898, 1016
-recovered GeneMark_model.109921_t, internal, 1238, 1246
-recovered GeneMark_model.109921_t, internal, 1284, 1292
-recovered GeneMark_model.109921_t, internal, 1330, 1338
-recovered GeneMark_model.109921_t, internal, 1368, 1378
-recovered GeneMark_model.109921_t, internal, 1411, 1425

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1694
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support