-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1983

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 89
Sorry, prediction Augustus_model.g41901.t1 fails validation.
(GGG)	 GG	1-89	GT	AGG
(GAA)	 AG	397-477	GC	GAG
-recovered Augustus_model.g41901.t1, terminal, 397, 477
-recovered Augustus_model.g41901.t1, internal, 397, 477
Couldn't classify 41, 89
Sorry, prediction GeneMark_model.109919_t fails validation.
(AAA)	 AG	41-89	GT	AGG
(GAA)	 AG	397-454	GT	GTG
(CCA)	 AG	505-572	GT	TGG
(GGC)	 AG	629-637	GT	TGG
(GGA)	 AG	668-688	GT	TGG
(TGC)	 AG	745-822	GG	AGG
-recovered GeneMark_model.109919_t, terminal, 745, 822
-recovered GeneMark_model.109919_t, internal, 41, 89
-recovered GeneMark_model.109919_t, internal, 397, 454
-recovered GeneMark_model.109919_t, internal, 505, 572
-recovered GeneMark_model.109919_t, internal, 629, 637
-recovered GeneMark_model.109919_t, internal, 668, 688

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 856, 1210
Sorry, prediction snap_scaffold_1983-snap.1-T1 fails validation.
(ATG)	 TC	812-817	GT	GGG
(GGG)	 AG	856-1210	GT	CGG
-recovered snap_scaffold_1983-snap.1-T1, initial, 812, 817
-recovered snap_scaffold_1983-snap.1-T1, internal, 856, 1210
Valid prediction for GlimmerHMM_glimmerT_62921-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62921-T1 869-1218-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1696
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support