-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1982

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 335, 449
Couldn't classify 1469, 1575
Sorry, prediction snap_scaffold_1982-snap.1-T1 fails validation.
(GTC)	 AG	335-449	GT	GAG
(GCA)	 AG	1469-1575	GT	AAG
-recovered snap_scaffold_1982-snap.1-T1, internal, 335, 449
-recovered snap_scaffold_1982-snap.1-T1, internal, 1469, 1575
Valid prediction for Augustus_model.g41900.t1
add_exon() Sorry, Augustus_model.g41900.t1 335-458-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 178, 247
Couldn't classify 1175, 1300
Sorry, prediction snap_scaffold_1982-snap.2-T1 fails validation.
(AAC)	 AG	178-247	GT	CGG
(GCA)	 AG	1175-1300	GT	GGG
-recovered snap_scaffold_1982-snap.2-T1, internal, 178, 247
-recovered snap_scaffold_1982-snap.2-T1, internal, 1175, 1300

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1575, rend_intergenic: 398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 1697
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1575, rend_intergenic: 398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support