-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_198

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106909_t
Valid prediction for snap_scaffold_198-snap.3-T1
Valid prediction for snap_scaffold_198-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61492-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61492-T1 3119-3314-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106910_t
Couldn't classify 9384, 9426
Sorry, prediction GeneMark_model.106908_t fails validation.
(ATG)	 AA	4163-4176	GT	CCG
(GAG)	 AG	4239-4322	GT	GTG
(TCG)	 AG	6041-6343	GT	GAG
(TCG)	 AG	6402-6533	GT	GAG
(TCG)	 AG	6592-6655	GT	CCG
(GGG)	 AG	7946-7996	GT	CGG
(GCA)	 AG	8020-8033	GT	GAG
(AGA)	 AG	8073-8117	GT	GAG
(AGA)	 AG	8220-8306	GT	GAG
(AGA)	 AG	8346-8453	GT	GAG
(AGC)	 AG	9200-9333	GT	CTG
(TGT)	 AG	9384-9426	GT	GAG
-recovered GeneMark_model.106908_t, initial, 4163, 4176
-recovered GeneMark_model.106908_t, internal, 4239, 4322
-recovered GeneMark_model.106908_t, internal, 6041, 6343
-recovered GeneMark_model.106908_t, internal, 6402, 6533
-recovered GeneMark_model.106908_t, internal, 6592, 6655
-recovered GeneMark_model.106908_t, internal, 7946, 7996
-recovered GeneMark_model.106908_t, internal, 8020, 8033
-recovered GeneMark_model.106908_t, internal, 8073, 8117
-recovered GeneMark_model.106908_t, internal, 8220, 8306
-recovered GeneMark_model.106908_t, internal, 8346, 8453
-recovered GeneMark_model.106908_t, internal, 9200, 9333
-recovered GeneMark_model.106908_t, internal, 9384, 9426
Couldn't classify 1719, 1936
Couldn't classify 9198, 9465
Sorry, prediction snap_scaffold_198-snap.1-T1 fails validation.
(GCG)	 AG	1719-1936	GT	TGG
(TGT)	 AG	3172-3238	GT	ACG
(GTA)	 AG	5298-5477	GT	TGG
(CCT)	 AG	5946-6400	GT	GAG
(TCG)	 AG	6421-6628	GT	GAG
(GCC)	 AG	7329-7351	GT	AAG
(GGG)	 AG	7946-7996	GT	CGG
(AGA)	 AG	9198-9465	GT	ATG
-recovered snap_scaffold_198-snap.1-T1, internal, 1719, 1936
-recovered snap_scaffold_198-snap.1-T1, internal, 3172, 3238
-recovered snap_scaffold_198-snap.1-T1, internal, 5298, 5477
-recovered snap_scaffold_198-snap.1-T1, internal, 5946, 6400
-recovered snap_scaffold_198-snap.1-T1, internal, 6421, 6628
-recovered snap_scaffold_198-snap.1-T1, internal, 7329, 7351
-recovered snap_scaffold_198-snap.1-T1, internal, 7946, 7996
-recovered snap_scaffold_198-snap.1-T1, internal, 9198, 9465
Couldn't classify 1719, 1946
Sorry, prediction GlimmerHMM_glimmerT_61493-T1 fails validation.
(GCG)	 AG	1719-1946	GT	TAG
(CCT)	 AG	5946-6457	AC	GAA
-recovered GlimmerHMM_glimmerT_61493-T1, terminal, 5946, 6457
-recovered GlimmerHMM_glimmerT_61493-T1, internal, 1719, 1946
Valid prediction for Augustus_model.g40897.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8175, rend_intergenic: 3977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9893
-exon list size: 62


building trellis

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12.5    
14.1    
15.6    
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18.8    
20.3    
21.9    
23.4    
25.0    
26.6    
28.1    
29.7    
31.2    
32.8    
34.4    
35.9    
37.5    
39.1    
40.6    
42.2    
43.8    
45.3    
46.9    
48.4    
50.0    
51.6    
53.1    
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56.2    
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59.4    
60.9    
62.5    
64.1    
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67.2    
68.8    
70.3    
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73.4    
75.0    
76.6    
78.1    
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81.2    
82.8    
84.4    
85.9    
87.5    
89.1    
90.6    
92.2    
93.8    
95.3    
96.9    
98.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8175, rend_intergenic: 3977  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support