-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1977

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1625, 1639
Sorry, prediction GeneMark_model.109916_t fails validation.
(ATG)	 CC	858-997	GT	GAG
(TGA)	 AG	1063-1119	GT	GGG
(AAG)	 AG	1145-1152	GT	AGG
(TCT)	 AG	1269-1302	GT	ATG
(CTT)	 AG	1357-1398	GT	AGG
(ACA)	 AG	1424-1429	GT	AGG
(AGA)	 AG	1527-1601	GC	GAG
(AGA)	 AG	1625-1639	GT	GCG
-recovered GeneMark_model.109916_t, initial, 858, 997
-recovered GeneMark_model.109916_t, internal, 1063, 1119
-recovered GeneMark_model.109916_t, internal, 1145, 1152
-recovered GeneMark_model.109916_t, internal, 1269, 1302
-recovered GeneMark_model.109916_t, internal, 1357, 1398
-recovered GeneMark_model.109916_t, internal, 1424, 1429
-recovered GeneMark_model.109916_t, internal, 1527, 1601
-recovered GeneMark_model.109916_t, internal, 1625, 1639

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1590, 1687
Sorry, prediction GeneMark_model.109915_t fails validation.
(ATG)	 GC	1071-1087	GT	GAG
(AGA)	 AG	1131-1251	GT	CTG
(TGT)	 AG	1590-1687	GC	GGG
-recovered GeneMark_model.109915_t, initial, 1071, 1087
-recovered GeneMark_model.109915_t, internal, 1131, 1251
-recovered GeneMark_model.109915_t, internal, 1590, 1687

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1703
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support