-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1974

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109913_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 126, 251
Couldn't classify 1476, 1576
Sorry, prediction snap_scaffold_1974-snap.1-T1 fails validation.
(GAG)	 AG	126-251	GT	GGG
(TTC)	 AG	767-801	GT	CAG
(GTG)	 AG	1110-1254	GT	CGG
(ATG)	 AG	1476-1576	GT	TGG
-recovered snap_scaffold_1974-snap.1-T1, initial, 1476, 1576
-recovered snap_scaffold_1974-snap.1-T1, internal, 126, 251
-recovered snap_scaffold_1974-snap.1-T1, internal, 767, 801
-recovered snap_scaffold_1974-snap.1-T1, internal, 1110, 1254
-recovered snap_scaffold_1974-snap.1-T1, internal, 1476, 1576
Valid prediction for GlimmerHMM_glimmerT_62918-T1
Couldn't classify 1110, 1254
Couldn't classify 1476, 1576
Sorry, prediction Augustus_model.g41897.t1 fails validation.
(GTG)	 AG	1110-1254	GT	CGG
(ATG)	 AG	1476-1576	GT	TGG
-recovered Augustus_model.g41897.t1, initial, 1476, 1576
-recovered Augustus_model.g41897.t1, internal, 1110, 1254
-recovered Augustus_model.g41897.t1, internal, 1476, 1576

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1706
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support