-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1973

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 182, 248
Couldn't classify 1644, 1665
Sorry, prediction GeneMark_model.109912_t fails validation.
(TGA)	 AG	182-248	GT	ACG
(GGA)	 AG	335-382	GT	GGG
(AGG)	 AG	424-528	GT	GAG
(AGC)	 AG	1544-1603	GT	AGG
(GGT)	 AG	1644-1665	GT	AGG
-recovered GeneMark_model.109912_t, internal, 182, 248
-recovered GeneMark_model.109912_t, internal, 335, 382
-recovered GeneMark_model.109912_t, internal, 424, 528
-recovered GeneMark_model.109912_t, internal, 1544, 1603
-recovered GeneMark_model.109912_t, internal, 1644, 1665

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1709
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support